ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl06a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL589766.17| Mouse DNA sequence from clone RP23-19G4 on chro... 48 0.027
2dbj|AP003603.1| Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, co... 48 0.027
3emb|AL161436.12| Human DNA sequence from clone RP11-377N20 on ch... 46 0.11
4gb|AC134402.9| Mus musculus chromosome 5, clone RP24-301D19, com... 42 1.7
5gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 1.7
6gb|AC159996.7| Mus musculus chromosome 5, clone RP23-46J11, comp... 42 1.7
7emb|AL157938.22| Human DNA sequence from clone RP11-544A12 on ch... 42 1.7
8gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.7
9gb|AC020922.9| Homo sapiens chromosome 19 clone CTD-2105E13, com... 42 1.7
10dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.7
11ref|XM_529508.1| PREDICTED: Pan troglodytes LOC452082 (LOC452082... 40 6.6
12ref|XM_465855.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
13ref|NM_192028.1| Oryza sativa (japonica cultivar-group), predic... 40 6.6
14gb|AC111097.10| Mus musculus chromosome 3, clone RP23-174G7, com... 40 6.6
15gb|AF220656.1| Homo sapiens apoptosis-associated nuclear protein... 40 6.6
16ref|XM_982990.1| PREDICTED: Mus musculus complement component fa... 40 6.6
17gb|AC115286.3| Homo sapiens chromosome 1 clone RP4-657M3, comple... 40 6.6
18emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
19emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
20gb|AC011611.26| Homo sapiens 12 BAC RP11-290L1 (Roswell Park Can... 40 6.6
21emb|CR607629.1| full-length cDNA clone CS0DK012YN13 of HeLa cell... 40 6.6
22emb|CR603389.1| full-length cDNA clone CS0DE011YC06 of Placenta ... 40 6.6
23gb|AC156278.8| Mus musculus 6 BAC RP24-249N9 (Roswell Park Cance... 40 6.6
24dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
26dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
27dbj|AB081277.2| Aotus azarai boliviensis LWS/MWS-29X gene for re... 40 6.6
28dbj|AB081271.2| Aotus lemurinus griseimembra LWS/MWS-14Y gene fo... 40 6.6
29dbj|AB081265.2| Aotus lemurinus griseimembra LWS/MWS-14X gene fo... 40 6.6
30gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 6.6
31dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
32gb|AF239986.1|AF239986 Homo sapiens apoptosis-associated nuclear... 40 6.6
33dbj|AP006620.1| Nocardia farcinica IFM 10152 plasmid pNF2 DNA, c... 40 6.6
34dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
35dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
36emb|AJ340796.1|HSA340796 Homo sapiens genomic sequence surroundi... 40 6.6
37dbj|AK106072.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
38gb|BC110820.1| Homo sapiens pleckstrin homology-like domain, fam... 40 6.6
39ref|NM_007350.3| Homo sapiens pleckstrin homology-like domain, f... 40 6.6
40emb|AL732384.1|CNS08C8X Leptosphaeria maculans : genomic region ... 40 6.6
41gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete... 40 6.6
42gb|BC018929.2| Homo sapiens pleckstrin homology-like domain, fam... 40 6.6
43emb|Z50194.1|HSPQPROT H.sapiens mRNA for PQ-rich protein 40 6.6 
>emb|AL589766.17| Mouse DNA sequence from clone RP23-19G4 on chromosome 13 contains the
             Vmp gene for vesicular membrane protein P24, complete
             sequence
          Length = 176183

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 24    gaatcccaacctgtgcactcacca 47
             ||||||||||||||||||||||||
Sbjct: 68637 gaatcccaacctgtgcactcacca 68614
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>dbj|AP003603.1| Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, complete sequence
          Length = 101965

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 103   gtttgccccaagctcgcgcacgct 126
             ||||||||||||||||||||||||
Sbjct: 68649 gtttgccccaagctcgcgcacgct 68672
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>emb|AL161436.12| Human DNA sequence from clone RP11-377N20 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 124814

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 320   tcaccgccaccctcaccctcacc 342
             |||||||||||||||||||||||
Sbjct: 11935 tcaccgccaccctcaccctcacc 11913
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>gb|AC134402.9| Mus musculus chromosome 5, clone RP24-301D19, complete sequence
          Length = 199834

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 318  cctcaccgccaccctcaccctcacc 342
            ||||||| |||||||||||||||||
Sbjct: 4162 cctcacccccaccctcaccctcacc 4138
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 226     ttcgccgccgatgatgacctc 246
               |||||||||||||||||||||
Sbjct: 1727471 ttcgccgccgatgatgacctc 1727451
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>gb|AC159996.7| Mus musculus chromosome 5, clone RP23-46J11, complete sequence
          Length = 208036

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 318    cctcaccgccaccctcaccctcacc 342
              ||||||| |||||||||||||||||
Sbjct: 143372 cctcacccccaccctcaccctcacc 143348
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>emb|AL157938.22| Human DNA sequence from clone RP11-544A12 on chromosome 9q34.13-34.3
            Contains the 3' end of the LAMC3 gene for laminin gamma
            3, the gene for ionized calcium binding adaptor (IBA2),
            the NUP214 gene for nucleoporin 214kDa, a novel gene, a
            ribosomal protein L13a (RPL13A) pseudogene, the gene for
            a novel protein (FLJ00024) and four CpG islands, complete
            sequence
          Length = 197019

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 318  cctcaccgccaccctcaccct 338
            |||||||||||||||||||||
Sbjct: 8405 cctcaccgccaccctcaccct 8425
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 316     cacctcaccgccaccctcacc 336
               |||||||||||||||||||||
Sbjct: 5344249 cacctcaccgccaccctcacc 5344229
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>gb|AC020922.9| Homo sapiens chromosome 19 clone CTD-2105E13, complete sequence
          Length = 134793

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 318   cctcaccgccaccctcaccctcacc 342
             ||||||| |||||||||||||||||
Sbjct: 50998 cctcacccccaccctcaccctcacc 51022
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 321     caccgccaccctcaccctcaccggc 345
               ||||||||||||||||| |||||||
Sbjct: 3786603 caccgccaccctcacccgcaccggc 3786627
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>ref|XM_529508.1| PREDICTED: Pan troglodytes LOC452082 (LOC452082), mRNA
          Length = 1290

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 327 caccctcaccctcaccggcccccgcatccgca 358
           ||||| |||||||||| || ||||||||||||
Sbjct: 352 cacccacaccctcacccgcacccgcatccgca 321
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>ref|XM_465855.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 345

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 321 caccgccaccctcaccctcaccggcccc 348
           |||||||||| |||||||||||| ||||
Sbjct: 309 caccgccaccatcaccctcaccgacccc 336
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>ref|NM_192028.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2925

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 403 tccatctccttcttcctcgacggccactactc 434
           ||||||||||||| |||||||||  |||||||
Sbjct: 574 tccatctccttctacctcgacggatactactc 605
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>gb|AC111097.10| Mus musculus chromosome 3, clone RP23-174G7, complete sequence
          Length = 206043

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    ctgtgcactcaccacctctgcttc 57
             |||||| |||||||||||||||||
Sbjct: 46729 ctgtgctctcaccacctctgcttc 46706
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>gb|AF220656.1| Homo sapiens apoptosis-associated nuclear protein PHLDA1 (PHLDA1)
           mRNA, partial cds
          Length = 3227

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 327 caccctcaccctcaccggcccccgcatccgca 358
           ||||| |||||||||| || ||||||||||||
Sbjct: 47  cacccacaccctcacccgcacccgcatccgca 78
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>ref|XM_982990.1| PREDICTED: Mus musculus complement component factor i (Cfi), mRNA
          Length = 2110

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 34 ctgtgcactcaccacctctgcttc 57
          |||||| |||||||||||||||||
Sbjct: 58 ctgtgctctcaccacctctgcttc 81
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>gb|AC115286.3| Homo sapiens chromosome 1 clone RP4-657M3, complete sequence
          Length = 125032

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 318  cctcaccgccaccctcaccctcac 341
            ||||||| ||||||||||||||||
Sbjct: 3383 cctcacctccaccctcaccctcac 3360
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>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06,
              complete sequence
          Length = 174570

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 261    ctcgttttcccttttcccccacgg 284
              |||||||||||||||||| |||||
Sbjct: 162627 ctcgttttcccttttcccacacgg 162650
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>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07,
            complete sequence
          Length = 143585

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 261  ctcgttttcccttttcccccacgg 284
            |||||||||||||||||| |||||
Sbjct: 9267 ctcgttttcccttttcccacacgg 9290
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>gb|AC011611.26| Homo sapiens 12 BAC RP11-290L1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179085

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 327    caccctcaccctcaccggcccccgcatccgca 358
              ||||| |||||||||| || ||||||||||||
Sbjct: 119504 cacccacaccctcacccgcacccgcatccgca 119473
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>emb|CR607629.1| full-length cDNA clone CS0DK012YN13 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1567

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 327 caccctcaccctcaccggcccccgcatccgca 358
           ||||| |||||||||| || ||||||||||||
Sbjct: 937 cacccacaccctcacccgcacccgcatccgca 968
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>emb|CR603389.1| full-length cDNA clone CS0DE011YC06 of Placenta of Homo sapiens
           (human)
          Length = 1600

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 327 caccctcaccctcaccggcccccgcatccgca 358
           ||||| |||||||||| || ||||||||||||
Sbjct: 939 cacccacaccctcacccgcacccgcatccgca 970
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>gb|AC156278.8| Mus musculus 6 BAC RP24-249N9 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 162919

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   cactcaccgcctccttccaa 180
             ||||||||||||||||||||
Sbjct: 25396 cactcaccgcctccttccaa 25415
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 261      ctcgttttcccttttcccccacgg 284
                |||||||||||||||||| |||||
Sbjct: 26941567 ctcgttttcccttttcccacacgg 26941590
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 321      caccgccaccctcaccctcaccggcccc 348
                |||||||||| |||||||||||| ||||
Sbjct: 17913538 caccgccaccatcaccctcaccgacccc 17913565
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 403      tccatctccttcttcctcgacggccactactc 434
                ||||||||||||| |||||||||  |||||||
Sbjct: 27890099 tccatctccttctacctcgacggatactactc 27890130
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>dbj|AB081277.2| Aotus azarai boliviensis LWS/MWS-29X gene for red-green sensitive
            cone visual pigment, complete cds
          Length = 6859

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 34   ctgtgcactcaccacctctgcttc 57
            ||||||| ||||||||||||||||
Sbjct: 3990 ctgtgcagtcaccacctctgcttc 3967
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>dbj|AB081271.2| Aotus lemurinus griseimembra LWS/MWS-14Y gene for red-green sensitive
            cone visual pigment, complete cds
          Length = 6287

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 34   ctgtgcactcaccacctctgcttc 57
            ||||||| ||||||||||||||||
Sbjct: 3422 ctgtgcagtcaccacctctgcttc 3399
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>dbj|AB081265.2| Aotus lemurinus griseimembra LWS/MWS-14X gene for red-green sensitive
            cone visual pigment, complete cds
          Length = 6388

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 34   ctgtgcactcaccacctctgcttc 57
            ||||||| ||||||||||||||||
Sbjct: 3531 ctgtgcagtcaccacctctgcttc 3508
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 10      gcgccgccacggaagaatcc 29
               ||||||||||||||||||||
Sbjct: 3069336 gcgccgccacggaagaatcc 3069317
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>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1144G04
          Length = 194459

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 403   tccatctccttcttcctcgacggccactactc 434
             ||||||||||||| |||||||||  |||||||
Sbjct: 76780 tccatctccttctacctcgacggatactactc 76811
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>gb|AF239986.1|AF239986 Homo sapiens apoptosis-associated nuclear protein (PHLDA1) gene,
            complete cds
          Length = 4262

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 327  caccctcaccctcaccggcccccgcatccgca 358
            ||||| |||||||||| || ||||||||||||
Sbjct: 2877 cacccacaccctcacccgcacccgcatccgca 2908
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>dbj|AP006620.1| Nocardia farcinica IFM 10152 plasmid pNF2 DNA, complete sequence
          Length = 87093

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 138   caccgacgacaacgaaaccctctc 161
             |||||||||| |||||||||||||
Sbjct: 22285 caccgacgaccacgaaaccctctc 22262
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>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_B06
          Length = 99637

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 321   caccgccaccctcaccctcaccggcccc 348
             |||||||||| |||||||||||| ||||
Sbjct: 48171 caccgccaccatcaccctcaccgacccc 48198
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>dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0654A08
          Length = 154812

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 321    caccgccaccctcaccctcaccggcccc 348
              |||||||||| |||||||||||| ||||
Sbjct: 153069 caccgccaccatcaccctcaccgacccc 153096
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>emb|AJ340796.1|HSA340796 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-DH14RS
          Length = 777

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 318 cctcaccgccaccctcaccctcac 341
           ||||||| ||||||||||||||||
Sbjct: 362 cctcacctccaccctcaccctcac 339
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>dbj|AK106072.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H08, full
           insert sequence
          Length = 1678

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 403 tccatctccttcttcctcgacggccactactc 434
           ||||||||||||| |||||||||  |||||||
Sbjct: 488 tccatctccttctacctcgacggatactactc 519
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>gb|BC110820.1| Homo sapiens pleckstrin homology-like domain, family A, member 1,
           mRNA (cDNA clone MGC:131738 IMAGE:6502812), complete cds
          Length = 2654

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 327 caccctcaccctcaccggcccccgcatccgca 358
           ||||| |||||||||| || ||||||||||||
Sbjct: 927 cacccacaccctcacccgcacccgcatccgca 958
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>ref|NM_007350.3| Homo sapiens pleckstrin homology-like domain, family A, member 1
            (PHLDA1), mRNA
          Length = 5913

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 327  caccctcaccctcaccggcccccgcatccgca 358
            ||||| |||||||||| || ||||||||||||
Sbjct: 1128 cacccacaccctcacccgcacccgcatccgca 1159
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>emb|AL732384.1|CNS08C8X Leptosphaeria maculans : genomic region surrounding the avirulence gene
             AvrLm1; putative centromeric or peri-centromeric region
             clone A3 of library Lm3HLP1 from strain v23.1.3 of Mat-
             Leptosphaeria maculans
          Length = 75030

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   caccggcccccgcatccgca 358
             ||||||||||||||||||||
Sbjct: 67321 caccggcccccgcatccgca 67340
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>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence
          Length = 53591

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 318   cctcaccgccaccctcaccctcaccggccccc 349
             ||||||| |||||| ||||||||||| |||||
Sbjct: 37950 cctcacctccacccccaccctcaccgcccccc 37981
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>gb|BC018929.2| Homo sapiens pleckstrin homology-like domain, family A, member 1,
           mRNA (cDNA clone MGC:14398 IMAGE:4301251), complete cds
          Length = 1659

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 327 caccctcaccctcaccggcccccgcatccgca 358
           ||||| |||||||||| || ||||||||||||
Sbjct: 936 cacccacaccctcacccgcacccgcatccgca 967
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>emb|Z50194.1|HSPQPROT H.sapiens mRNA for PQ-rich protein
          Length = 1412

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 327  caccctcaccctcaccggcccccgcatccgca 358
            ||||| |||||||||| || ||||||||||||
Sbjct: 1249 cacccacaccctcacccgcacccgcatccgca 1280


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,194,445
Number of Sequences: 3902068
Number of extensions: 3194445
Number of successful extensions: 68987
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68637
Number of HSP's gapped (non-prelim): 350
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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