Clone Name | bastl06a08 |
---|---|
Clone Library Name | barley_pub |
>GUNC_CELFI (P14090) Endoglucanase C precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase C) (Cellulase C) Length = 1101 Score = 36.2 bits (82), Expect = 0.039 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = +3 Query: 177 SGWGPLPSQTR*STWF--QLSKSLVG*PPGSLVTCSRSQTASSCGPTRKA 320 +GWG + S + S WF QL SL PPGSL SQ A++ PT KA Sbjct: 820 TGWGEVASHQQHSRWFAHQLDPSLPSPPPGSLAGGPNSQ-AATWDPTTKA 868
>REL3_PIG (Q8HY17) Relaxin-3 precursor (Insulin-like peptide INSL7)| (Insulin-like peptide 7) [Contains: Relaxin-3 B chain; Relaxin-3 A chain] Length = 140 Score = 33.5 bits (75), Expect = 0.26 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1 Query: 304 VQPGRRRSRAGGHGEACVIASSPSSCCKFGCRERFRFDIC 423 VQPG +R+ G V+A S+CCK+GC + +C Sbjct: 101 VQPGWQRTPGALRGSRDVLAGLSSNCCKWGCSKSEISSLC 140
>JHD3B_DROME (Q9V6L0) Probable JmjC domain-containing histone demethylation| protein 3B (EC 1.14.11.-) Length = 452 Score = 29.3 bits (64), Expect = 4.8 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -3 Query: 443 RSARRGAHMSNLNLSRHPNLQQEDGEEAMTQASPCPPALDLRLPGWTARRSC 288 +S R M ++ RHP ED A+ A+P PP LD+ L ++ C Sbjct: 323 QSDRYDLWMEGRDVGRHP----EDPPNAVLSAAPLPPHLDVLLCDKKMKKQC 370
>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting| gene 1) (Rig-1) Length = 1366 Score = 28.9 bits (63), Expect = 6.3 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Frame = +1 Query: 121 GTRPRPPASELRARDPELDRGGGPSPHRQDDRHGFSCPRA*WADHQGA**HAQGVRQLRL 300 G P PP RD +L G S +H F RA W + GA ++G + Sbjct: 1265 GDLPPPPLPPPELRD-KLALGSAGSR-----QHVFPRARAQWGEESGAGSASRGPTSSQR 1318 Query: 301 AVQPGRRRSRAGGHG-EACVIASSP 372 P + S+ G G EAC +SP Sbjct: 1319 GPHPDGKESQGRGRGLEACRSPNSP 1343
>HAIR_HUMAN (O43593) Protein hairless| Length = 1189 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Frame = -3 Query: 428 GAHMSNLNLSRHPNLQQEDGE-EAMTQASPCPPALDLRLPG---WTARRSC 288 G H+ + P+L Q DGE A Q +PCP L L P WT+ +C Sbjct: 234 GGHLQRAGEAERPSLHQRDGEMGAGRQQNPCP--LFLGQPDTVPWTSWPAC 282
>RFIP4_MOUSE (Q8BQP8) Rab11 family-interacting protein 4 (Rab11-FIP4)| Length = 635 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = -3 Query: 404 LSRHPNLQQEDGEEAMTQASP-CPPALDLRLP 312 L R P+ QED EEAMT A P P LD+ P Sbjct: 125 LPREPDFFQEDEEEAMTLALPEGPQELDMDSP 156
>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor| Length = 4007 Score = 28.5 bits (62), Expect = 8.2 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 286 RQLRLAVQPGRRRSRAGGHGEACVIASSPSSCCKF 390 +Q L ++ G+ +SRA HG+ C SP+ C + Sbjct: 253 KQACLPLRCGKGQSRARRHGQCCEECVSPAGSCSY 287 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,238,108 Number of Sequences: 219361 Number of extensions: 1077054 Number of successful extensions: 3190 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3077 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3188 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)