ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl06a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GUNC_CELFI (P14090) Endoglucanase C precursor (EC 3.2.1.4) (Endo... 36 0.039
2REL3_PIG (Q8HY17) Relaxin-3 precursor (Insulin-like peptide INSL... 33 0.26
3JHD3B_DROME (Q9V6L0) Probable JmjC domain-containing histone dem... 29 4.8
4ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblast... 29 6.3
5HAIR_HUMAN (O43593) Protein hairless 29 6.3
6RFIP4_MOUSE (Q8BQP8) Rab11 family-interacting protein 4 (Rab11-F... 29 6.3
7FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor 28 8.2

>GUNC_CELFI (P14090) Endoglucanase C precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase C) (Cellulase C)
          Length = 1101

 Score = 36.2 bits (82), Expect = 0.039
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 177 SGWGPLPSQTR*STWF--QLSKSLVG*PPGSLVTCSRSQTASSCGPTRKA 320
           +GWG + S  + S WF  QL  SL   PPGSL     SQ A++  PT KA
Sbjct: 820 TGWGEVASHQQHSRWFAHQLDPSLPSPPPGSLAGGPNSQ-AATWDPTTKA 868



to top

>REL3_PIG (Q8HY17) Relaxin-3 precursor (Insulin-like peptide INSL7)|
           (Insulin-like peptide 7) [Contains: Relaxin-3 B chain;
           Relaxin-3 A chain]
          Length = 140

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 304 VQPGRRRSRAGGHGEACVIASSPSSCCKFGCRERFRFDIC 423
           VQPG +R+     G   V+A   S+CCK+GC +     +C
Sbjct: 101 VQPGWQRTPGALRGSRDVLAGLSSNCCKWGCSKSEISSLC 140



to top

>JHD3B_DROME (Q9V6L0) Probable JmjC domain-containing histone demethylation|
           protein 3B (EC 1.14.11.-)
          Length = 452

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 443 RSARRGAHMSNLNLSRHPNLQQEDGEEAMTQASPCPPALDLRLPGWTARRSC 288
           +S R    M   ++ RHP    ED   A+  A+P PP LD+ L     ++ C
Sbjct: 323 QSDRYDLWMEGRDVGRHP----EDPPNAVLSAAPLPPHLDVLLCDKKMKKQC 370



to top

>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting|
            gene 1) (Rig-1)
          Length = 1366

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +1

Query: 121  GTRPRPPASELRARDPELDRGGGPSPHRQDDRHGFSCPRA*WADHQGA**HAQGVRQLRL 300
            G  P PP      RD +L  G   S      +H F   RA W +  GA   ++G    + 
Sbjct: 1265 GDLPPPPLPPPELRD-KLALGSAGSR-----QHVFPRARAQWGEESGAGSASRGPTSSQR 1318

Query: 301  AVQPGRRRSRAGGHG-EACVIASSP 372
               P  + S+  G G EAC   +SP
Sbjct: 1319 GPHPDGKESQGRGRGLEACRSPNSP 1343



to top

>HAIR_HUMAN (O43593) Protein hairless|
          Length = 1189

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -3

Query: 428 GAHMSNLNLSRHPNLQQEDGE-EAMTQASPCPPALDLRLPG---WTARRSC 288
           G H+     +  P+L Q DGE  A  Q +PCP  L L  P    WT+  +C
Sbjct: 234 GGHLQRAGEAERPSLHQRDGEMGAGRQQNPCP--LFLGQPDTVPWTSWPAC 282



to top

>RFIP4_MOUSE (Q8BQP8) Rab11 family-interacting protein 4 (Rab11-FIP4)|
          Length = 635

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 404 LSRHPNLQQEDGEEAMTQASP-CPPALDLRLP 312
           L R P+  QED EEAMT A P  P  LD+  P
Sbjct: 125 LPREPDFFQEDEEEAMTLALPEGPQELDMDSP 156



to top

>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor|
          Length = 4007

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 286 RQLRLAVQPGRRRSRAGGHGEACVIASSPSSCCKF 390
           +Q  L ++ G+ +SRA  HG+ C    SP+  C +
Sbjct: 253 KQACLPLRCGKGQSRARRHGQCCEECVSPAGSCSY 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,238,108
Number of Sequences: 219361
Number of extensions: 1077054
Number of successful extensions: 3190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3188
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top