Clone Information

BLAST Search Result

Clone Name	bastl06a07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	XKR7_PANTR (Q49LS1) XK-related protein 7	33	0.17
2	XKR7_HUMAN (Q5GH72) XK-related protein 7	33	0.17
3	DIA_DROME (P48608) Protein diaphanous	32	0.49
4	PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A act...	32	0.64
5	PTPA1_ASPFU (Q4WMU5) Serine/threonine-protein phosphatase 2A act...	32	0.64
6	SIRT3_HUMAN (Q9NTG7) NAD-dependent deacetylase sirtuin-3, mitoch...	31	0.83
7	UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (E...	31	1.1
8	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	30	1.4
9	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	30	1.4
10	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	30	1.4
11	JPH4_HUMAN (Q96JJ6) Junctophilin-4 (Junctophilin-like 1 protein)	30	1.9
12	COEA1_MOUSE (Q80X19) Collagen alpha-1(XIV) chain precursor	30	1.9
13	COEA1_HUMAN (Q05707) Collagen alpha-1(XIV) chain precursor (Undu...	30	1.9
14	CITE4_MOUSE (Q9WUL8) Cbp/p300-interacting transactivator 4 (MSG1...	30	2.4
15	XKR7_RAT (Q5GH56) XK-related protein 7	30	2.4
16	XKR7_MOUSE (Q5GH64) XK-related protein 7	30	2.4
17	CXCC1_MOUSE (Q9CWW7) CpG-binding protein (PHD finger and CXXC do...	30	2.4
18	PCGF6_MOUSE (Q99NA9) Polycomb group RING finger protein 6 (RING ...	30	2.4
19	HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated c...	30	2.4
20	HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated...	30	2.4
21	TSKS_RAT (P60531) Testis-specific serine kinase substrate (Testi...	29	3.2
22	K2C5_RAT (Q6P6Q2) Keratin, type II cytoskeletal 5 (Cytokeratin-5...	29	4.1
23	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	29	4.1
24	FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger prote...	29	4.1
25	FTSKL_DEIRA (Q9RXB5) Hypothetical ftsK-like protein DR0400	29	4.1
26	RENT1_HUMAN (Q92900) Regulator of nonsense transcripts 1 (EC 3.6...	28	5.4
27	HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated...	28	5.4
28	NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)	28	5.4
29	SIDT1_HUMAN (Q9NXL6) SID1 transmembrane family member 1 precursor	28	5.4
30	IASPP_MOUSE (Q5I1X5) RelA-associated inhibitor (Inhibitor of ASP...	28	5.4
31	HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated c...	28	5.4
32	BRLF1_EBV (P03209) Transcription activator BRLF1	28	7.0
33	WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp)	28	7.0
34	LPP_HUMAN (Q93052) Lipoma-preferred partner (LIM domain-containi...	28	7.0
35	JPH4_MOUSE (Q80WT0) Junctophilin-4 (Junctophilin-like 1 protein)	28	7.0
36	NOCT_HUMAN (Q9UK39) Nocturnin (CCR4 protein homolog)	28	7.0
37	SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr...	28	7.0
38	CB029_HUMAN (Q9UKZ1) Protein C2orf29	28	9.2
39	UL14_HHV11 (P04291) Hypothetical UL14 protein	28	9.2
40	ATL1G_ARATH (Q570X5) RING-H2 finger protein ATL1G	28	9.2
41	ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi...	28	9.2
42	IF2_THEFY (Q47RV1) Translation initiation factor IF-2	28	9.2
43	ZN575_HUMAN (Q86XF7) Zinc finger protein 575	28	9.2
44	CB029_MOUSE (Q9CWN7) Protein C2orf29 homolog	28	9.2

>XKR7_PANTR (Q49LS1) XK-related protein 7|
          Length = 579

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 3   RGSAGPPGSPVDSARSPPVLVPRPTAPRRQPWAASRRSGT 122
           R ++ P G P D+  SPP  +PR T   R   +A  R+GT
Sbjct: 456 RKASEPCGPPADAITSPPRSLPRTTGAERDGASAGERAGT 495

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>XKR7_HUMAN (Q5GH72) XK-related protein 7|
          Length = 579

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 3   RGSAGPPGSPVDSARSPPVLVPRPTAPRRQPWAASRRSGT 122
           R ++ P G P D+  SPP  +PR T   R   +A  R+GT
Sbjct: 456 RKASEPCGPPADAITSPPRSLPRTTGAERDGASAGERAGT 495

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>DIA_DROME (P48608) Protein diaphanous|
          Length = 1091

 Score = 32.0 bits (71), Expect = 0.49
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 44  PLPSRAGSAPDRPPPSAMGG 103
           P+P RAG  P  PPP  MGG
Sbjct: 546 PMPGRAGGPPPPPPPPGMGG 565



 Score = 28.9 bits (63), Expect = 4.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 44  PLPSRAGSAPDRPPPSAMGG 103
           P+P RAG  P  PPP  M G
Sbjct: 530 PMPGRAGGGPPPPPPPPMPG 549

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>PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 478

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 21  PGSPVDSARSPPVLVPRPTAPRRQPWAASRRSGTRPS 131
           P +  D++R PP     P AP R PWA+S+ +G  P+
Sbjct: 432 PSALPDTSRLPP----GPMAPTRAPWASSQPAGPAPT 464

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>PTPA1_ASPFU (Q4WMU5) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 473

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +3

Query: 21  PGSPVDSARSPPVLVPRPTAPRRQPWAAS 107
           PG P  S      L P P AP R PWAAS
Sbjct: 424 PGKPPTSLPDTSRLPPGPMAPTRAPWAAS 452

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>SIRT3_HUMAN (Q9NTG7) NAD-dependent deacetylase sirtuin-3, mitochondrial|
           precursor (EC 3.5.1.-) (SIR2-like protein 3) (hSIRT3)
          Length = 399

 Score = 31.2 bits (69), Expect = 0.83
 Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 3   RGSAGPPGSPVDSARSPPVLVPRPTAP---RRQPWAAS 107
           RGS G  G P+D AR P    PRP  P   RRQP AA+
Sbjct: 51  RGSHGARGEPLDPAR-PLQRPPRPEVPRAFRRQPRAAA 87

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>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 51)
           (Ubiquitin-specific-processing protease 51)
           (Deubiquitinating enzyme 51)
          Length = 711

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVPRPTAPRRQPWAASR---RSGTRP 128
           G + PP  P      PP   P P APR + W  SR   R G+RP
Sbjct: 119 GLSAPPPPPARPPPPPPP--PPPPAPRPRAWRGSRRRSRPGSRP 160

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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVPRPTAPRRQP 95
           G  GPPGS  +S R  P   P P+ PR QP
Sbjct: 548 GKPGPPGSQGESGRPGP---PGPSGPRGQP 574

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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVPRPTAPRRQP 95
           G  GPPGS  +S R  P   P P+ PR QP
Sbjct: 548 GKPGPPGSQGESGRPGP---PGPSGPRGQP 574

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVPRPTAPRRQP 95
           G  GPPGS  +S R  P   P P+ PR QP
Sbjct: 549 GKPGPPGSQGESGRPGP---PGPSGPRGQP 575

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>JPH4_HUMAN (Q96JJ6) Junctophilin-4 (Junctophilin-like 1 protein)|
          Length = 628

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +3

Query: 6   GSAGPPGSPVDS--ARSPPVLVP-RPTAPRRQPWAASRRSG 119
           GS GPPGS      A +PP L+    T      W A RRSG
Sbjct: 253 GSTGPPGSEASGPPAAAPPALIEGSATEVYAGEWRADRRSG 293

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>COEA1_MOUSE (Q80X19) Collagen alpha-1(XIV) chain precursor|
          Length = 1797

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 6    GSAGPPGSPVDSARSPP--VLVPRPTAPRRQP 95
            GS GPPGSP    R PP  + VP P  P  QP
Sbjct: 1728 GSPGPPGSP--GPRGPPGHLGVPGPQGPSGQP 1757

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>COEA1_HUMAN (Q05707) Collagen alpha-1(XIV) chain precursor (Undulin)|
          Length = 1796

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 6    GSAGPPGSPVDSARSPP--VLVPRPTAPRRQP 95
            GS GPPGSP    R PP  + VP P  P  QP
Sbjct: 1727 GSPGPPGSP--GPRGPPGHLGVPGPQGPSGQP 1756

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>CITE4_MOUSE (Q9WUL8) Cbp/p300-interacting transactivator 4 (MSG1-related|
           protein 2) (MRG-2)
          Length = 182

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 17  ASGFACRLRPLPSRAGSAPDRPPPSAMGGLE 109
           A+G    L+P P  A S P  PPP A+G ++
Sbjct: 101 AAGGPSPLQPAPGAAASLPPPPPPPALGCMD 131

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>XKR7_RAT (Q5GH56) XK-related protein 7|
          Length = 580

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 15  GPPGSPVDSARSPPVLVPRPTAPRRQPWA-ASRRSGT 122
           GP G P D+  SPP  +PR T   R   A    R+GT
Sbjct: 460 GPCGPPADAITSPPRSLPRTTGAERDGAAVGGERAGT 496

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>XKR7_MOUSE (Q5GH64) XK-related protein 7|
          Length = 580

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 15  GPPGSPVDSARSPPVLVPRPTAPRRQPWA-ASRRSGT 122
           GP G P D+  SPP  +PR T   R   A    R+GT
Sbjct: 460 GPCGPPADAITSPPRSLPRTTGTERDGVAVGGERAGT 496

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>CXCC1_MOUSE (Q9CWW7) CpG-binding protein (PHD finger and CXXC domain-containing|
           protein 1) (CXXC finger protein 1)
          Length = 660

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 90  DGGGRSGAEPAREGSGRSLQA-NPEAQR 10
           DG  R+G+EP  EG GR   A +PE QR
Sbjct: 93  DGSERAGSEPRDEGGGRKRPASDPELQR 120

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>PCGF6_MOUSE (Q99NA9) Polycomb group RING finger protein 6 (RING finger protein|
           134) (Mel18 and Bmi1-like RING finger)
          Length = 353

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 3   RGSAGPPGSPVDSARSPPVLVPRPTAPRRQP 95
           R SA PP  P     SPP L+P P A    P
Sbjct: 19  RASAMPPPPPPPPPISPPALIPAPAAGEEGP 49

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>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVPRPTAPRRQPWAASRRSGTR 125
           G   P  SP   A SPP     P APR  P+       TR
Sbjct: 736 GPLPPAASPGPPAASPPAAPSSPRAPRTSPYGVPGSPATR 775

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>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVPRPTAPRRQPWAASRRSGTR 125
           G   P  SP   A SPP     P APR  P+       TR
Sbjct: 736 GPLPPAASPGPPAASPPAAPSSPRAPRTSPYGVPGSPATR 775

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>TSKS_RAT (P60531) Testis-specific serine kinase substrate (Testis-specific|
           kinase substrate) (STK22 substrate 1)
          Length = 585

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 3   RGSAGPPGSPVDSARSPPVLVPRPTAPRRQPWAASRRSGTRPSI 134
           +G +GPPGSP +         PRP       W  + R+G  PS+
Sbjct: 273 QGCSGPPGSPEEP--------PRPRGLPSNGWGMAIRAGEGPSL 308

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>K2C5_RAT (Q6P6Q2) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)|
           (Keratin-5) (K5)
          Length = 576

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 89  TAGGGRARNQHGRGAGGVY 33
           ++GGG  RNQ G GAGG Y
Sbjct: 73  SSGGGSFRNQFGAGAGGGY 91

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVPRPTAPRRQP 95
           G  GPPG+  +  RS P   P P  PR QP
Sbjct: 548 GKPGPPGNQGEPGRSGP---PGPAGPRGQP 574



 Score = 27.7 bits (60), Expect = 9.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 3   RGSAGPPGSPVDSARSPPVLVPRPTAP 83
           RG  GPPG+P  + ++  V +P P  P
Sbjct: 595 RGPGGPPGTPGPAGKNGDVGLPGPPGP 621

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>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 9   SAGPPGSPVDSARSPPVLVPRPTAPRRQPWAASRRSG 119
           +A  P +P   AR+PP     P APR  P   +R  G
Sbjct: 609 AARRPKAPPGPARAPPGQPAEPDAPRSSPGPGAREEG 645

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>FTSKL_DEIRA (Q9RXB5) Hypothetical ftsK-like protein DR0400|
          Length = 980

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 15  GPPGSPVDSARSPPVLVPRPTAPRR 89
           GPP +P  +A S P +VP P A  R
Sbjct: 423 GPPATPAPAAASVPQMVPTPRAAAR 447

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>RENT1_HUMAN (Q92900) Regulator of nonsense transcripts 1 (EC 3.6.1.-)|
            (ATP-dependent helicase RENT1) (Nonsense mRNA reducing
            factor 1) (NORF1) (Up-frameshift suppressor 1 homolog)
            (hUpf1)
          Length = 1129

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 4    VAALGLRV--RL*TPPAPLPCWFRARPPPAVSHGRPRGDQERG 126
            VAA+ + +   L  PP P P +F     PA   G P+G   RG
Sbjct: 987  VAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRG 1029

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>HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3 (Hyperpolarization-activated
           cation channel 3) (HAC-3)
          Length = 779

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 3   RGSAGPPGSPVDSARSPPVLVPRPTAPRRQPWAASRRSGTRPS 131
           R SAG P SP+   R+ P+L        R PWA++ R    P+
Sbjct: 646 RRSAGSPASPLVPVRAGPLLA-------RGPWASTSRLPAPPA 681

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>NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)|
          Length = 1000

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 21  PGSPVDSARSPPVLVPRPTAPRRQPWAASRRSGTRP 128
           P +     R+PP  +P P AP R P  + R +  RP
Sbjct: 3   PAARAHPTRAPPHALPTPRAPPRAPPPSPRSARRRP 38

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>SIDT1_HUMAN (Q9NXL6) SID1 transmembrane family member 1 precursor|
          Length = 827

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 12  AGPPGSPVDSARSPPVLVPRPTAPRRQPWAASR 110
           A  PG P  S R PP       APRR P+ A+R
Sbjct: 19  AASPGHPAKSPRQPP-------APRRDPFDAAR 44

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>IASPP_MOUSE (Q5I1X5) RelA-associated inhibitor (Inhibitor of ASPP protein)|
           (Protein iASPP) (PPP1R13B-like protein)
           (NFkB-interacting protein 1)
          Length = 824

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVPR-PTAPRRQP 95
           G A  PGSP+ S   PP L P+ P  P+ QP
Sbjct: 387 GRAVLPGSPIFSRAPPPKLPPQPPPQPQMQP 417

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>HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3
          Length = 780

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 3   RGSAGPPGSPVDSARSPPVLVPRPTAPRRQPWAASRRSGTRPS 131
           R SAG P SP+   R+ P+L        R PWA++ R    P+
Sbjct: 647 RRSAGSPASPLVPVRAGPLLA-------RGPWASTSRLPAPPA 682

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>BRLF1_EBV (P03209) Transcription activator BRLF1|
          Length = 605

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 18  PPGSPVDSARSPPVLVPRPTAPRRQP 95
           PPGSP  +   P  L P PT P  +P
Sbjct: 453 PPGSPWANRPLPASLAPTPTGPVHEP 478

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>WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp)|
          Length = 520

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVPRPTAPRRQPWAAS 107
           G +GPP  P+  A  PP   P P  P   P   S
Sbjct: 393 GRSGPPPPPLPGAGGPPAPPPPPPPPPPPPCPGS 426

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>LPP_HUMAN (Q93052) Lipoma-preferred partner (LIM domain-containing preferred|
           translocation partner in lipoma)
          Length = 612

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +3

Query: 18  PPGSPVDSARSPPVLVP-----RPTAPRRQPWAASRRSGTRP 128
           PP S   S  SPPV  P     R   P + P  A+++S  +P
Sbjct: 141 PPQSSTGSTASPPVSTPVTGHKRMVIPNQPPLTATKKSTLKP 182

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>JPH4_MOUSE (Q80WT0) Junctophilin-4 (Junctophilin-like 1 protein)|
          Length = 628

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVP------RPTAPRRQPWAASRRSG 119
           GS GPPGS    A  PP+  P        T      W A RRSG
Sbjct: 253 GSTGPPGS---EASGPPIPAPPALIEGSATEVYAGEWRADRRSG 293

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>NOCT_HUMAN (Q9UK39) Nocturnin (CCR4 protein homolog)|
          Length = 431

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +3

Query: 3   RGSAGPPGSPVDSAR---SPPVLVPRPTAPRRQPWAASRRSGTRPS 131
           RG+ G    P    R   SPP  VPRP +PR    AAS  SG   S
Sbjct: 15  RGAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLA-AASAASGAARS 59

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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3262

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +3

Query: 3    RGSAGPPG---SPVDSARSPPVLVPRPTAPRRQPWAASRRSGT 122
            R ++ PPG     V SAR+PPVL  +   P   P   S  SG+
Sbjct: 2285 RVASPPPGVSEKRVPSARTPPVLAEKARVPTVPPRPGSSLSGS 2327

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>CB029_HUMAN (Q9UKZ1) Protein C2orf29|
          Length = 510

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 14  WASGFACRLRPLP-SRAGSAPDRPPPS 91
           +A+ FA  L P P +R G  PDRPP S
Sbjct: 145 FAASFAHLLNPAPPARGGQEPDRPPLS 171

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>UL14_HHV11 (P04291) Hypothetical UL14 protein|
          Length = 219

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 15  GPPGSP-VDSARSPPVLVPRPTAPRRQPWAAS 107
           GPPG+P    +R+PP   P PT P   P +AS
Sbjct: 179 GPPGAPAAPLSRTPPSPAP-PTGPATDPASAS 209

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>ATL1G_ARATH (Q570X5) RING-H2 finger protein ATL1G|
          Length = 261

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 32  CRLRPLPSRAGSAPDRPPPSAMGGLEEIRNE 124
           CRL  +PSR+  + D P PS +   EE+ ++
Sbjct: 141 CRLALIPSRSRQSQDDPVPSLVSPDEEVSSQ 171

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>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)|
           (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1)
           (ArgBP1)
          Length = 513

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVPRPTAPRRQPWAAS 107
           GSAG P  P  SA +P  LVP        P AA+
Sbjct: 287 GSAGTPPLPATSASAPAPLVPATVPSSTAPNAAA 320

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>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 23/47 (48%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 6   GSAGPPGSPVDSARSPPVLVPRPTAPRRQP--WAASRRS---GTRPS 131
           G+AG  G P  SA  PP  VPRP  PR  P    ASR +   G RPS
Sbjct: 225 GTAG--GRPGSSAGGPPRPVPRP-GPRPSPMNMPASRPTPPGGARPS 268

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>ZN575_HUMAN (Q86XF7) Zinc finger protein 575|
          Length = 245

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 15  GPPGSPVDSARSPPVLVPRPTAPRRQP 95
           GPP  P  SA  P      P  PRR+P
Sbjct: 31  GPPQKPSQSAPGPTASAGSPPRPRRRP 57

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>CB029_MOUSE (Q9CWN7) Protein C2orf29 homolog|
          Length = 505

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 14  WASGFACRLRPLP-SRAGSAPDRPPPS 91
           +A+ FA  L P P +R G  PDRPP S
Sbjct: 140 FAASFAHLLNPAPPARGGQEPDRPPLS 166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,315,624
Number of Sequences: 219361
Number of extensions: 437888
Number of successful extensions: 4533
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 3204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4467
length of database: 80,573,946
effective HSP length: 20
effective length of database: 76,186,726
effective search space used: 1828481424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result