>C5AP_STRP6 (Q5X9R0) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1184

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +1

Query: 208 DIEAGTVVTDSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVVEITLDI 384
           DI+A TV  D+ ++ +  +   T  P + S E  S K TKT +  DD ++ V +   D+
Sbjct: 28  DIKANTVTEDTPATEQAVE---TPQPTAVSEEAPSSKETKTPQTPDDAEETVADKANDL 83

>C5AP_STRP1 (P58099) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1181

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 208 DIEAGTVVTDSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVVEITLDI 384
           DI+A TV  D+ ++ +  +   T  P + S E  S K TKT +  DD ++ + +   D+
Sbjct: 28  DIKANTVTEDTPATEQAVE---TPQPTAVSEEAPSSKETKTPQTPDDAEETIADDANDL 83

>YMS5_CAEEL (P34501) Hypothetical protein K03H1.5 precursor|
          Length = 1385

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -3

Query: 234  SDYRASFNIRHLHLYL-----SGQFSPSVCLIPREISATDWNPEHLSKFHQEEKSKENPS 70
            +D+R++FN+      +     S Q+SP V   P   S     P + +   Q+++  E P 
Sbjct: 1313 TDFRSNFNMNQPSRPIPSQPPSSQYSPPVFAAPPPPSQPTRLPTYTNAISQQQRQFEPPR 1372

Query: 69   PPQPN 55
            PP+ N
Sbjct: 1373 PPRGN 1377

>TNC6B_HUMAN (Q9UPQ9) Trinucleotide repeat-containing 6B protein|
          Length = 1723

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = -3

Query: 129 WN-----PEHLSKFHQEEKSKENPSPPQPNCAGA 43
           WN     P   +K HQ+++  + P PPQP  +G+
Sbjct: 806 WNETGRQPNSWNKQHQQQQPPQQPPPPQPEASGS 839

>RAB3C_HUMAN (Q96E17) Ras-related protein Rab-3C|
          Length = 227

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 99  QEEKSKENPSPPQPNCA 49
           Q  + KE P PPQPNCA
Sbjct: 210 QNTRLKETPPPPQPNCA 226

>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 870

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 141 SATDWNPEHLSKFHQEEKSKENPSPPQPNCAGANPI 34
           S T+  P+  + F +EE+ +  P+PP P+ + A P+
Sbjct: 411 SGTEPEPKPYNPFEEEEEEEGEPAPPVPSPSLAPPV 446

>WRKY1_ARATH (Q9SI37) WRKY transcription factor 1 (WRKY DNA-binding protein 1)|
           (Zinc-dependent activator protein 1) (Transcription
           factor ZAP1)
          Length = 487

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 235 DSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVV 366
           + D+++ PQ +T  +I     +E    K TKT  F+   D G V
Sbjct: 385 EGDANKTPQSSTLQSITKDQHVEDHLRKKTKTNGFEKSLDQGPV 428

>YV03_HUMAN (Q9H4I3) Protein PP2447|
          Length = 376

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 202 MPDIEAGTVVTDSDSSRRPQ-DNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVVEITL 378
           + D++A  ++ +    RR Q  N   T+    + +GS      T  F DD    VV+   
Sbjct: 37  LSDVDAFNLLLEMKLKRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIR 96

Query: 379 DIQRDSVSIQ 408
           ++Q D V ++
Sbjct: 97  EVQPDVVVVE 106

>SCPA1_STRPY (P15926) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1167

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 208 DIEAGTVVTDSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVVEITLDI 384
           DI+A TV  D+  + +  +   T  P + S E  S K TKT +  DD ++ + +   D+
Sbjct: 28  DIKANTVTEDTPVTEQAVE---TPQPTAVSEEVPSSKETKTPQTPDDAEETIADDANDL 83

>SCAR4_ARATH (Q5XPJ6) Protein SCAR4 (AtSCAR4) (Protein WAVE3)|
          Length = 1170

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -3

Query: 219  SFNIRHLHLYLSGQFSPSVCLIPREISATDWNPEHLSKFHQEEKSKENPSPPQPN 55
            SFNI+      +G    +    P E+S TD    +   + +E K+ E  SP   N
Sbjct: 920  SFNIQRDENTQNGSVQANEAQYPSEVSVTDGENHNFHIYTEESKATEEQSPSGVN 974

>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1|
          Length = 1707

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -2

Query: 208  QASPSLPLRAIFSFCLLNPERDFSH*LEPGASLEIPPRRKEQRKPESAATKLRRREPY*T 29
            Q S ++PL       L  PE   S     GAS    PR+K  R+  S  T + + EP  T
Sbjct: 1408 QGSRTVPLGHKSYSALSEPEPQSSASQSSGASEADSPRQKRPRRQASQKTVVIKEEPVET 1467

Query: 28   QMR 20
            +++
Sbjct: 1468 EVK 1470


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,364,582
Number of Sequences: 219361
Number of extensions: 1236132
Number of successful extensions: 3723
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3720
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)