ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl06a03 |
|---|---|
| Clone Library Name | barley_pub |
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 32.3 bits (72), Expect = 0.62 Identities = 20/45 (44%), Positives = 20/45 (44%) Frame = +3 Query: 51 AAAWRPRGTRFTALPQAFSPPGWLAGFLARPRSLASPPIPFPHAH 185 AA RPRG A P A SPP R R SP IP P H Sbjct: 2931 AAGARPRGQPTAAPPSAASPP--RVSLPVRSRQQQSPAIPLPPMH 2973
>EXOC2_ARATH (Q8S3U9) Exocyst complex component 2 (Exocyst complex component| Sec5) Length = 1090 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = -2 Query: 175 GNGMGGEASERGRAKKP--ASQPGGEKACGSAVNRVPLGR 62 G G G + E+GRA+K + GGE C VN L R Sbjct: 106 GRGRGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAELAR 145
>CEZ2_HUMAN (Q8TE49) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 31.2 bits (69), Expect = 1.4 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = -2 Query: 172 NGMGGEASERGRAKKPASQPGGEKACGSAVNRVP 71 NG G+++ERG+ KK S+ G ++ G++ + P Sbjct: 550 NGKNGDSAERGKEKKAKSRKGSKEESGASASTSP 583
>NPHP4_MOUSE (P59240) Nephrocystin-4 (Nephroretinin)| Length = 1425 Score = 30.8 bits (68), Expect = 1.8 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Frame = +1 Query: 145 ARSLPL-PSHSHMPTEKGMAAFWGFLQDDGGGPAPDMNEF---PYYSAADLASWPP---- 300 +R +P PS + P + +AA QD GP +++ P A +S PP Sbjct: 469 SRKMPASPSGTPAPAARDLAA----TQDSPVGPGLSLSQLTASPLSPALQSSSKPPLQPP 524 Query: 301 -SSLAPAGAVVKAESGSPSMIDHLHA 375 SS +P G ++AES S + HL A Sbjct: 525 DSSQSPEGPQLQAESVLESRVSHLEA 550
>Y968_MYCBO (P64766) Hypothetical protein Mb0968c| Length = 346 Score = 30.0 bits (66), Expect = 3.1 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = -1 Query: 371 WRWSIIDGLPLSAFTTAPAGAREEGGQDARSAAE**---GNSFMSGAGPPPSSCKKPQKA 201 W+ ++ D LP ++ T A A GG+ A + G ++G GPPP + P A Sbjct: 285 WQGTVFDSLPETSLTHARAATLTIGGRSAPARITEQTPWGTHSVAGVGPPPYARSGPASA 344
>Y943_MYCTU (P64765) Hypothetical protein Rv0943c/MT0969| Length = 346 Score = 30.0 bits (66), Expect = 3.1 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = -1 Query: 371 WRWSIIDGLPLSAFTTAPAGAREEGGQDARSAAE**---GNSFMSGAGPPPSSCKKPQKA 201 W+ ++ D LP ++ T A A GG+ A + G ++G GPPP + P A Sbjct: 285 WQGTVFDSLPETSLTHARAATLTIGGRSAPARITEQTPWGTHSVAGVGPPPYARSGPASA 344
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 30.0 bits (66), Expect = 3.1 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 2/103 (1%) Frame = -1 Query: 311 AREEGGQDARSAAE**GNSFMSGAGPP--PSSCKKPQKAAIPFSVGMWEWDGRGSERARS 138 AR+ G +AR + M G P PSS Q + P + +GS +A + Sbjct: 3679 ARDMGRHEARPHPQASPAPAMQKKGQPGYPSSADYSQSSRAPSAYHHASESKKGSRQAHT 3738 Query: 137 SQEASQPAGGRKSLRQRSEPRASRAPRCCCVERQPVFSSTTPS 9 A QP ++ Q +A+ P+ + QP S TPS Sbjct: 3739 GPSALQPKADTQAQPQMQGRQAAPGPQ----QSQPPSSRQTPS 3777
>GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-protein coupled| receptor PGR1) Length = 609 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 66 PRGTRFTALPQAFSPPGWLAGFLARPRSLASPPIPFPHA 182 PR + LP AF+ L F P++L PP PFP A Sbjct: 491 PRSASASLLPDAFA----LTAFECEPQALRRPPGPFPAA 525
>SOX8_MOUSE (Q04886) Transcription factor SOX-8| Length = 464 Score = 29.6 bits (65), Expect = 4.0 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Frame = +1 Query: 154 LPLPSHSHMPTEKGMA----AFWGFLQDDGGGPAPDMNEFPYYSAADLASWPPSSLAPAG 321 LPL HS +PTE A ++ G G + + A AS P+ P Sbjct: 288 LPLNGHSALPTEPSQATASGSYGGASYSHSGATGIGASPVWAHKGAPSASASPTEAGPLR 347 Query: 322 AVVKAESGSPSMI-DHLHAVSG-ADF 393 +K E SPS D H G AD+ Sbjct: 348 PQIKTEQLSPSHYNDQSHGSPGRADY 373
>SOX3_HUMAN (P41225) Transcription factor SOX-3| Length = 446 Score = 29.6 bits (65), Expect = 4.0 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 8/74 (10%) Frame = +1 Query: 154 LPLPSHSHMPTEKGMAAFWGFLQDDGGGPAPDMN--------EFPYYSAADLASWPPSSL 309 +P + S+M AA G+ GG AP + P +AA A+ SL Sbjct: 313 MPPGAQSYMNVAAAAAAASGY-----GGMAPSATAAAAAAYGQQPATAAAAAAAAAAMSL 367 Query: 310 APAGAVVKAESGSP 351 P G+VVK+E SP Sbjct: 368 GPMGSVVKSEPSSP 381
>YNIF_AZOBR (P25316) Hypothetical 12.3 kDa protein in nifK-nifY intergenic| region Length = 118 Score = 29.6 bits (65), Expect = 4.0 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 5/96 (5%) Frame = -1 Query: 284 RSAAE**GNSFMSGAGPPPSSCKKPQKAAIPFSVGMWEWDGRGSER-ARSSQEASQPAGG 108 R AAE G+ ++G P PSS + + W RGS R A+ S+ + G Sbjct: 22 RHAAEQPGSGGIAGNLPAPSSPRSFRS-----------WRRRGSSRPAKGSRVTACQGAG 70 Query: 107 RKSLRQRSEPRASRAPRCC-CVE---RQPVFSSTTP 12 R S S + RCC C E R VF P Sbjct: 71 RPSASSSSSTPSRARSRCCECQEIRGRCAVFDDRPP 106
>BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle protein 1)| Length = 963 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/54 (25%), Positives = 25/54 (46%) Frame = -1 Query: 344 PLSAFTTAPAGAREEGGQDARSAAE**GNSFMSGAGPPPSSCKKPQKAAIPFSV 183 P + TT P+ +A + G F++ GPP S +KP+ +P ++ Sbjct: 85 PYQSETTTPSTTTSTAATTTEAAEDESGYDFVNDNGPPSSRPRKPEPPTMPRTI 138
>SOX3_MOUSE (P53784) Transcription factor SOX-3| Length = 375 Score = 29.6 bits (65), Expect = 4.0 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 8/74 (10%) Frame = +1 Query: 154 LPLPSHSHMPTEKGMAAFWGFLQDDGGGPAPDM--------NEFPYYSAADLASWPPSSL 309 +P + S+M AA G+ GG AP + P +AA A+ SL Sbjct: 242 MPPGAQSYMNAAAAAAAASGY-----GGMAPSAAAAAAAAYGQQPATAAAAAAAAAAMSL 296 Query: 310 APAGAVVKAESGSP 351 P G+VVK+E SP Sbjct: 297 GPMGSVVKSEPSSP 310
>RIMS1_HUMAN (Q86UR5) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1692 Score = 29.6 bits (65), Expect = 4.0 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Frame = -1 Query: 257 SFMSGAGPPPSSCKKPQKAAIPFSVGMWEWDGRG---SERARSSQEASQPAGGRKSLRQR 87 S S + PP K P G+ E +G+G SER R + ++QP G R+R Sbjct: 260 SSRSRSEPPRERKKTP---------GLSEQNGKGALKSERKRVPKTSAQPVEGAVEERER 310 Query: 86 SEPRASR 66 E R SR Sbjct: 311 KERRESR 317
>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch| Length = 5412 Score = 29.6 bits (65), Expect = 4.0 Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 17/143 (11%) Frame = -1 Query: 380 ETAWRWSIIDGLPLSAFTTAPAGARE---EGGQDAR--SAAE**GNSFMSGAGPPPSSCK 216 E + R S+ DG S T+ PA E +G D + S E S +G+ S Sbjct: 1885 EPSRRESVKDGAAQSRETSRPASVAESAKDGADDLKELSRPESTTQSKEAGSIKDEKSPL 1944 Query: 215 KPQKAAIPFSVGMWEWDGRGSERARS------------SQEASQPAGGRKSLRQRSEPRA 72 ++A+ P SV D + S S+EAS+PA +S++ +E Sbjct: 1945 ASEEASRPASVAESVKDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDEAEKSK 2004 Query: 71 SRAPRCCCVERQPVFSSTTPSPS 3 + R E+ P+ S P+ Sbjct: 2005 EESRRESVAEKSPLPSKEASRPA 2027
>VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21| Length = 985 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = -1 Query: 350 GLPLSAFTTAPAGAREE-GGQDARSAAE**GNSFMSGAGPPPSSCKKPQKAAIP 192 G+P SA + +G ++ GG S G + GA PPP K+ + AA P Sbjct: 514 GVPPSANLPSASGRPQQTGGNSVSSLPTPTGEALPDGAPPPPGMSKRDRMAAKP 567
>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)| Length = 1992 Score = 29.3 bits (64), Expect = 5.2 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 20/113 (17%) Frame = -1 Query: 338 SAFTTAPAGAREEGGQDARSAAE**GNSFMSGAGPPPSSCKKPQKAAIPFSVGMWEWDGR 159 SA +T P GAR + G+D A S + P P + ++ + ++W R Sbjct: 211 SASSTVPPGARVKQGKDQNKA-----RRSRSASSPSPRRSSREKEQSKTGGSSKFDWAAR 265 Query: 158 GSER-----------ARSSQEASQP---------AGGRKSLRQRSEPRASRAP 60 S + S E S+P A RKS ++RSE + P Sbjct: 266 FSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELP 318
>NOLC1_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)| (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar and coiled-body phosphoprotein 1) Length = 704 Score = 29.3 bits (64), Expect = 5.2 Identities = 21/91 (23%), Positives = 39/91 (42%) Frame = -1 Query: 335 AFTTAPAGAREEGGQDARSAAE**GNSFMSGAGPPPSSCKKPQKAAIPFSVGMWEWDGRG 156 A + PA G D+ S +E + P P + KK AA+P + + Sbjct: 462 AAPSLPAKQAPRAGGDSSSDSESSSSEEEKKTPPKPPAKKKAAGAAVPKPTPVKKAAAES 521 Query: 155 SERARSSQEASQPAGGRKSLRQRSEPRASRA 63 S + SS+++S+ + + +P+A +A Sbjct: 522 SSSSSSSEDSSEEEKKKPKSKATPKPQAGKA 552
>NDF1_CHICK (P79765) Neurogenic differentiation factor 1 (NeuroD1) (NeuroD)| Length = 357 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/33 (48%), Positives = 17/33 (51%) Frame = +3 Query: 93 PQAFSPPGWLAGFLARPRSLASPPIPFPHAHGK 191 PQA +PPGW AG L SPP P A K Sbjct: 14 PQAQAPPGWAAGCL-------SPPADGPEADKK 39
>IF2_PELCD (Q3A4A7) Translation initiation factor IF-2| Length = 947 Score = 29.3 bits (64), Expect = 5.2 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Frame = -1 Query: 377 TAWRWSIIDGLPLSAFTTAPAGAREEGGQDARSAAE**GNSFMSGAGPPPSSCKKPQKAA 198 TA R I+ + LS T+ P R+E ++ + E + SG GP P + + +AA Sbjct: 226 TANRAKILGRVELSTLTSPPK--RQERAKNGKGRPERPKGAKPSG-GPAPRAKEAAPQAA 282 Query: 197 IPFSVG-MWEWDGRGSERARSSQEAS--------QPAGGRKSLRQRSEPRASRAPRCCCV 45 +PF G + + RG ++ + + S GR++ RQ EP Sbjct: 283 VPFDGGPAPDKEVRGGKKGKKGKGNSYDKDKGFADGGKGRRARRQVYEPERD-------- 334 Query: 44 ERQPVFSSTTPSP 6 ER+ TP P Sbjct: 335 ERRMRRGKKTPKP 347
>TFE3_HUMAN (P19532) Transcription factor E3| Length = 743 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +3 Query: 48 AAAAWRPRGTRFTALPQAFSPPGWLAGFLARPRSLASPPIPFPHAHGKGN 197 AA+AW+ + + LP F PP RPR PP+ P G+G+ Sbjct: 567 AASAWKRSPDQASPLPWTF-PPRKGGPVRMRPRLFPHPPMRLPRYLGRGD 615
>MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A)| (Proliferation-related protein p80) [Contains: MAP1 light chain LC2] Length = 2805 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 4/80 (5%) Frame = -1 Query: 236 PPPSSCKKPQKAAIP-FSVGMWEWDGRGSERARSSQEASQPA---GGRKSLRQRSEPRAS 69 P P+ + + AA P + G W S R + QP GG + P Sbjct: 2372 PAPAKAENEEAAAXPAWERGAWPEGAERSSRPDTXLSPEQPVCPXGGSGGPPSSASPEVE 2431 Query: 68 RAPRCCCVERQPVFSSTTPS 9 P+ C E +P +PS Sbjct: 2432 AGPQGCXTEPRPHRGELSPS 2451
>RIMS1_MOUSE (Q99NE5) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) (Rab3-interacting protein 1) (Fragment) Length = 388 Score = 28.9 bits (63), Expect = 6.8 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Frame = -1 Query: 341 LSAFTTAPAGA---REEGGQDARSAAE**GNSFMSGAGPPPSSCKKPQKAAIPFSVGMWE 171 +S+ TA GA R +G + ++ A PP KK + G+ E Sbjct: 250 VSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKK--------APGLSE 301 Query: 170 WDGRG---SERARSSQEASQPAGGRKSLRQRSEPRASR 66 +G+G SER R + QP G R+R E R +R Sbjct: 302 QNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETR 339
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 161 RGSERARSSQEASQPAGGRKSLRQRSEPRASRAPRCCCVERQPVFSSTTP 12 R +RARS ++ +GGR+S R S P S +P+ P S +P Sbjct: 233 RSDKRARSESKSRSRSGGRRS-RSNSPPNRSPSPKKRRDNSSPRSGSASP 281
>ANX11_MOUSE (P97384) Annexin A11 (Annexin XI) (Calcyclin-associated annexin 50)| (CAP-50) Length = 503 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = +1 Query: 208 WGFLQDDGGGPAPDMNEFPYYSAADLAS--WPPSSLAPAGA 324 +G GG P P M +P Y A + PP+ P GA Sbjct: 102 YGMYPPPGGNPPPGMPSYPAYPGAPVPGQPMPPTGQQPPGA 142
>J1L_HCMVA (P17143) Hypothetical protein J1L| Length = 309 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = -1 Query: 128 ASQPAG-GRKSLRQRSEPRASRAPRCCCVERQPVFSSTTPSPS 3 A PAG G R+ + PR R R CV +P+F +P PS Sbjct: 181 AGVPAGCGGGVCRRCARPRGVRLRRNECVASRPLFPPRSPGPS 223
>HRH3_CAVPO (Q9JI35) Histamine H3 receptor (HH3R)| Length = 445 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/89 (25%), Positives = 33/89 (37%) Frame = -1 Query: 353 DGLPLSAFTTAPAGAREEGGQDARSAAE**GNSFMSGAGPPPSSCKKPQKAAIPFSVGMW 174 + +PL + AG E G+ A SGA P+S Sbjct: 270 ESMPLHRYGVGEAGPGAEAGEAALGGG--------SGAAASPTSSSGSSS---------- 311 Query: 173 EWDGRGSERARSSQEASQPAGGRKSLRQR 87 RG+ER RS + S+P+ SL +R Sbjct: 312 ----RGTERPRSLKRGSKPSASSASLEKR 336
>NOSO_STAAW (P0A094) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +3 Query: 60 WRPRGTRFTALPQAFSPPGWLAGFLARPRSLASPPIPFPHAH 185 W+ +GT F LP + P F P SL +P H H Sbjct: 148 WKGKGTNFDVLPLIYQLPNESVKFYEYPTSLIK-EVPIEHNH 188
>NOSO_STAAU (P0A004) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +3 Query: 60 WRPRGTRFTALPQAFSPPGWLAGFLARPRSLASPPIPFPHAH 185 W+ +GT F LP + P F P SL +P H H Sbjct: 148 WKGKGTNFDVLPLIYQLPNESVKFYEYPTSLIK-EVPIEHNH 188
>NOSO_STAAS (Q6G818) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +3 Query: 60 WRPRGTRFTALPQAFSPPGWLAGFLARPRSLASPPIPFPHAH 185 W+ +GT F LP + P F P SL +P H H Sbjct: 148 WKGKGTNFDVLPLIYQLPNESVKFYEYPTSLIK-EVPIEHNH 188
>NOSO_STAAN (P0A093) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +3 Query: 60 WRPRGTRFTALPQAFSPPGWLAGFLARPRSLASPPIPFPHAH 185 W+ +GT F LP + P F P SL +P H H Sbjct: 148 WKGKGTNFDVLPLIYQLPNESVKFYEYPTSLIK-EVPIEHNH 188
>NOSO_STAAM (P0A092) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +3 Query: 60 WRPRGTRFTALPQAFSPPGWLAGFLARPRSLASPPIPFPHAH 185 W+ +GT F LP + P F P SL +P H H Sbjct: 148 WKGKGTNFDVLPLIYQLPNESVKFYEYPTSLIK-EVPIEHNH 188
>NOSO_STAAC (Q5HEK7) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +3 Query: 60 WRPRGTRFTALPQAFSPPGWLAGFLARPRSLASPPIPFPHAH 185 W+ +GT F LP + P F P SL +P H H Sbjct: 148 WKGKGTNFDVLPLIYQLPNESVKFYEYPTSLIK-EVPIEHNH 188
>YJHG_ECOLI (P39358) Hypothetical protein yjhG| Length = 655 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = +1 Query: 289 SWPPSSLAPAGAVVKAESGSPSMID 363 ++P ++AP G+V+K+ + PSMID Sbjct: 438 TFPVGNIAPEGSVIKSTAIDPSMID 462
>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1615 Score = 28.5 bits (62), Expect = 8.9 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Frame = -1 Query: 341 LSAFTTAPAGA---REEGGQDARSAAE**GNSFMSGAGPPPSSCKKPQKAAIPFSVGMWE 171 +S+ TA GA R +G + ++ A PP KK + G+ E Sbjct: 250 VSSQDTATPGAPLHRNKGAEPSQQALGPEQKQASRSRSEPPRERKK--------APGLSE 301 Query: 170 WDGRG---SERARSSQEASQPAGGRKSLRQRSEPRASR 66 +G+G SER R + QP G R+R E R +R Sbjct: 302 QNGKGGQKSERKRVPKSVVQPGEGIADERERKERRETR 339
>J1S_HCMVA (P17144) Hypothetical protein J1S| Length = 224 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = -1 Query: 128 ASQPAG-GRKSLRQRSEPRASRAPRCCCVERQPVFSSTTPSPS 3 A PAG G R+ + PR R R CV +P+F +P PS Sbjct: 64 AGVPAGCGGGVCRRCARPRGVRLRRNECVASRPLFPPRSPGPS 106
>HXD8_HUMAN (P13378) Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4)| Length = 290 Score = 28.5 bits (62), Expect = 8.9 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Frame = -1 Query: 311 AREEGGQDARSAA--E**GNSFMSGAGPPPSSCKKPQKAAIPFSVGMWEWDGRGSERARS 138 A E GG+ A +AA + GNS PP + P + P G +GRG Sbjct: 37 APEVGGRHAAAAAALQLYGNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRG------ 90 Query: 137 SQEASQPAGGRKSLRQRSEP 78 QE P GG + ++ P Sbjct: 91 -QEYFHPGGGSPAAAYQAAP 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,207,407 Number of Sequences: 219361 Number of extensions: 1245257 Number of successful extensions: 5387 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 5002 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5362 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
