Clone Information

BLAST Search Result

Clone Name	bastl06a03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|CP000271.1\| Burkholderia xenovorans LB400 chromosome 2, compl...	46	0.10
2	gb\|AE005133.1\| Halobacterium sp. NRC-1 section 164 of 170 of the...	46	0.10
3	ref\|NM_188714.1\| Oryza sativa (japonica cultivar-group), predic...	44	0.40
4	ref\|XM_546884.2\| PREDICTED: Canis familiaris similar to Exocyst ...	44	0.40
5	gb\|AY330485.1\| Saccharopolyspora erythraea amino acid permease g...	44	0.40
6	emb\|BX640443.1\| Bordetella bronchiseptica strain RB50, complete ...	44	0.40
7	emb\|BX640412.1\| Bordetella pertussis strain Tohama I, complete g...	44	0.40
8	emb\|AL939117.1\|SCO939117 Streptomyces coelicolor A3(2) complete ...	44	0.40
9	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	44	0.40
10	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.40
11	dbj\|AP003210.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.40
12	dbj\|AK119763.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.40
13	gb\|CP000031.1\| Silicibacter pomeroyi DSS-3, complete genome	42	1.6
14	gb\|AY185174.1\|AH012458S1 Canis familiaris transcription factor T...	42	1.6
15	gb\|AC150542.2\| Bos taurus BAC CH240-382E8 (Children's Hospital ...	42	1.6
16	ref\|XM_847025.1\| PREDICTED: Canis familiaris similar to fatty ac...	42	1.6
17	gb\|AY271660.1\| Actinomadura madurae maduropeptin biosynthesis ge...	42	1.6
18	gb\|CP000316.1\| Polaromonas sp. JS666, complete genome	42	1.6
19	gb\|AF475108.1\| Triticum aestivum acidic ribosomal protein mRNA, ...	42	1.6
20	gb\|AY107641.1\| Zea mays PCO129147 mRNA sequence	42	1.6
21	gb\|CP000155.1\| Hahella chejuensis KCTC 2396, complete genome	42	1.6
22	gb\|AC149039.2\| Medicago truncatula chromosome 7 BAC clone mth2-4...	40	6.3
23	gb\|AC131966.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.3
24	gb\|AE016822.1\| Leifsonia xyli subsp. xyli str. CTCB07, complete ...	40	6.3
25	gb\|AC010124.6\| Drosophila melanogaster clone BACR06O03, complete...	40	6.3
26	ref\|XM_361279.1\| Magnaporthe grisea 70-15 hypothetical protein (...	40	6.3
27	gb\|CP000359.1\| Deinococcus geothermalis DSM 11300, complete genome	40	6.3
28	gb\|AY261359.1\| Bovine herpesvirus 5 strain SV507/99, complete ge...	40	6.3
29	gb\|AC127347.4\| Mus musculus BAC clone RP23-54N12 from chromosome...	40	6.3
30	emb\|X70354.1\|PGLIP P.glumae genes lipA and lipB	40	6.3
31	emb\|AL137798.8\| Human DNA sequence from clone RP5-1182A14 on chr...	40	6.3
32	gb\|CP000089.1\| Dechloromonas aromatica RCB, complete genome	40	6.3
33	emb\|AL939106.1\|SCO939106 Streptomyces coelicolor A3(2) complete ...	40	6.3
34	gb\|AC099056.2\| Homo sapiens chromosome 3 clone RP11-585O21, comp...	40	6.3
35	ref\|NM_141705.1\| Drosophila melanogaster CG12419-RA (CG12419), mRNA	40	6.3
36	gb\|AC097446.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.3
37	gb\|AC098565.3\| Oryza sativa chromosome 10 clone OSJNBa0028C16, c...	40	6.3
38	gb\|DQ067263.1\| Kocuria rosea maltooligosyl trehalose synthase (t...	40	6.3
39	gb\|AE006470.1\| Chlorobium tepidum TLS, complete genome	40	6.3
40	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
41	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
42	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
43	gb\|AC009183.5\|AC009183 Drosophila melanogaster, chromosome 3R, r...	40	6.3
44	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	6.3
45	dbj\|AP004809.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
46	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	40	6.3
47	gb\|AE003685.5\| Drosophila melanogaster chromosome 3R, section 23...	40	6.3
48	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.3
49	emb\|AL606683.3\|OSJN00089 Oryza sativa genomic DNA, chromosome 4,...	40	6.3
50	gb\|AC135859.4\| Mus musculus BAC clone RP24-151D9 from 10, comple...	40	6.3
51	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	40	6.3
52	emb\|AL663027.9\| Mouse DNA sequence from clone RP23-16P3 on chrom...	40	6.3
53	gb\|AC124443.3\| Mus musculus chromosome 18 clone RP24-178K3, comp...	40	6.3

>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 422     tcgcgccggagctcggccagcag 444
               |||||||||||||||||||||||
Sbjct: 2969453 tcgcgccggagctcggccagcag 2969431

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>gb|AE005133.1| Halobacterium sp. NRC-1 section 164 of 170 of the complete genome
          Length = 12130

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 430  gagctcggccagcagcgcctcga 452
            |||||||||||||||||||||||
Sbjct: 4846 gagctcggccagcagcgcctcga 4868

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>ref|NM_188714.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1152

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 270  ctccgccgccgacctcgcgtcc 291
            ||||||||||||||||||||||
Sbjct: 1089 ctccgccgccgacctcgcgtcc 1068

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>ref|XM_546884.2| PREDICTED: Canis familiaris similar to Exocyst complex component Sec6
            (rSec6) (LOC489764), mRNA
          Length = 2220

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 429  ggagctcggccagcagcgcctc 450
            ||||||||||||||||||||||
Sbjct: 1624 ggagctcggccagcagcgcctc 1603

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>gb|AY330485.1| Saccharopolyspora erythraea amino acid permease gene, partial cds;
             transport protein, helix-turn-helix regulator (pkeRI),
             P450 monooxygenase (pkePI), P450 monooxygenase (pkePII),
             P450 monooxygenase (pkePIII), type I PKS (pkeAI), type I
             PKS (pkeAII), and type I PKS (pkeAIII) genes, complete
             cds; pkeAIV gene, complete sequence; type I PKS,
             monooxygenases, transporter, ketoacyl-ACP synthase
             (typeII), acyl carrier protien, amino transferase, and
             DNA-binding protein genes, complete cds; and unknown genes
          Length = 68451

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 274   gccgccgacctcgcgtcctggccgcc 299
             |||||||||||| |||||||||||||
Sbjct: 30393 gccgccgacctcacgtcctggccgcc 30418

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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 417    cgaggtcgcgccggagctcggccagc 442
              ||||||||||||| ||||||||||||
Sbjct: 253219 cgaggtcgcgccgcagctcggccagc 253244

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>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 417    cgaggtcgcgccggagctcggccagc 442
              ||||||||||||| ||||||||||||
Sbjct: 174898 cgaggtcgcgccgcagctcggccagc 174923

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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 220   caggacgacggcggcggacctg 241
             ||||||||||||||||||||||
Sbjct: 87163 caggacgacggcggcggacctg 87184

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 316     gccggcgccgtcgtgaaggcgg 337
               ||||||||||||||||||||||
Sbjct: 1782779 gccggcgccgtcgtgaaggcgg 1782800

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 270     ctccgccgccgacctcgcgtcc 291
               ||||||||||||||||||||||
Sbjct: 7804447 ctccgccgccgacctcgcgtcc 7804426

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>dbj|AP003210.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0010K01
          Length = 144404

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 270    ctccgccgccgacctcgcgtcc 291
              ||||||||||||||||||||||
Sbjct: 107028 ctccgccgccgacctcgcgtcc 107007

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>dbj|AK119763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G09, full
            insert sequence
          Length = 1544

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 270  ctccgccgccgacctcgcgtcc 291
            ||||||||||||||||||||||
Sbjct: 1204 ctccgccgccgacctcgcgtcc 1183

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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 431     agctcggccagcagcgcctcg 451
               |||||||||||||||||||||
Sbjct: 1897612 agctcggccagcagcgcctcg 1897632

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>gb|AY185174.1|AH012458S1 Canis familiaris transcription factor Tbx4 (Tbx4) gene, exons 1 and
           2
          Length = 1701

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 330 gaaggcggagagcgggagccc 350
           |||||||||||||||||||||
Sbjct: 878 gaaggcggagagcgggagccc 858

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>gb|AC150542.2| Bos taurus  BAC CH240-382E8 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 191058

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 426    gccggagctcggccagcagcgcctc 450
              ||||| |||||||||||||||||||
Sbjct: 149824 gccggtgctcggccagcagcgcctc 149848

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>ref|XM_847025.1| PREDICTED: Canis familiaris similar to fatty acid desaturase domain
           family, member 6 (LOC609709), mRNA
          Length = 1029

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 431 agctcggccagcagcgcctcg 451
           |||||||||||||||||||||
Sbjct: 62  agctcggccagcagcgcctcg 42

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>gb|AY271660.1| Actinomadura madurae maduropeptin biosynthesis gene cluster, partial
            sequence
          Length = 11426

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 305  ccctcgcgccggccggcgccg 325
            |||||||||||||||||||||
Sbjct: 9274 ccctcgcgccggccggcgccg 9294

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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 310     gcgccggccggcgccgtcgtg 330
               |||||||||||||||||||||
Sbjct: 3396990 gcgccggccggcgccgtcgtg 3397010

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>gb|AF475108.1| Triticum aestivum acidic ribosomal protein mRNA, partial cds
          Length = 417

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 270 ctccgccgccgacctcgcgtc 290
           |||||||||||||||||||||
Sbjct: 16  ctccgccgccgacctcgcgtc 36

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>gb|AY107641.1| Zea mays PCO129147 mRNA sequence
          Length = 535

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 111 cccggctggctggctggcttc 131
           |||||||||||||||||||||
Sbjct: 119 cccggctggctggctggcttc 99

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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 46      acgcagcagcagcgtggcgcc 66
               |||||||||||||||||||||
Sbjct: 4005990 acgcagcagcagcgtggcgcc 4005970

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>gb|AC149039.2| Medicago truncatula chromosome 7 BAC clone mth2-4g23, complete sequence
          Length = 103199

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 146   ctcgctcgcttcccctcccatccc 169
             ||||||||||||||||||| ||||
Sbjct: 40945 ctcgctcgcttcccctcccctccc 40968

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>gb|AC131966.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0028C16, complete sequence
          Length = 151030

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   ctcgcgccggccggcgccgt 326
             ||||||||||||||||||||
Sbjct: 11201 ctcgcgccggccggcgccgt 11182

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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    actactccgccgccgacctc 285
              ||||||||||||||||||||
Sbjct: 569234 actactccgccgccgacctc 569253

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>gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete sequence
          Length = 193483

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   ggctggctggctggcttcttggct 137
             |||||||||||||||| |||||||
Sbjct: 53083 ggctggctggctggctgcttggct 53106

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>ref|XM_361279.1| Magnaporthe grisea 70-15 hypothetical protein (MG03753.4) partial
           mRNA
          Length = 1557

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 424 gcgccggagctcggccagcagcgcctcg 451
           ||||||||||||||||| |||| |||||
Sbjct: 261 gcgccggagctcggccaccagctcctcg 234

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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 432    gctcggccagcagcgcctcgagcgcaag 459
              |||| |||||||||||| ||||||||||
Sbjct: 907561 gctctgccagcagcgccgcgagcgcaag 907534

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>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome
          Length = 138390

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   gctcggccagcagcgcctcg 451
             ||||||||||||||||||||
Sbjct: 79379 gctcggccagcagcgcctcg 79360

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>gb|AC127347.4| Mus musculus BAC clone RP23-54N12 from chromosome 18, complete sequence
          Length = 220483

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    cccggctggctggctggctt 130
              ||||||||||||||||||||
Sbjct: 162519 cccggctggctggctggctt 162500

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>emb|X70354.1|PGLIP P.glumae genes lipA and lipB
          Length = 2900

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  cgcgccggccggcgccgtcg 328
            ||||||||||||||||||||
Sbjct: 1699 cgcgccggccggcgccgtcg 1718

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>emb|AL137798.8| Human DNA sequence from clone RP5-1182A14 on chromosome 1 Contains the
             5' end of a novel gene, a novel gene, a macrophage
             stimulating 1 (hepatocyte growth factor-like)(MST1)
             pseudogene and three CpG islands, complete sequence
          Length = 146141

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   ggctggctggctggcttctt 133
             ||||||||||||||||||||
Sbjct: 99547 ggctggctggctggcttctt 99566

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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    ctcggccagcagcgcctcga 452
              ||||||||||||||||||||
Sbjct: 416537 ctcggccagcagcgcctcga 416556

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>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    gctcggccagcagcgcctcg 451
              ||||||||||||||||||||
Sbjct: 118491 gctcggccagcagcgcctcg 118510

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>gb|AC099056.2| Homo sapiens chromosome 3 clone RP11-585O21, complete sequence
          Length = 182405

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    cccctcccatcccattccca 176
              ||||||||||||||||||||
Sbjct: 137713 cccctcccatcccattccca 137694

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>ref|NM_141705.1| Drosophila melanogaster CG12419-RA (CG12419), mRNA
          Length = 396

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 114 ggctggctggctggcttcttggct 137
           |||||||||||||||| |||||||
Sbjct: 102 ggctggctggctggctgcttggct 79

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>gb|AC097446.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0034B05, complete sequence
          Length = 175061

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctcgcgccggccggcgccgt 326
             ||||||||||||||||||||
Sbjct: 67249 ctcgcgccggccggcgccgt 67268

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>gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, complete sequence
          Length = 166757

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    ctcgcgccggccggcgccgt 326
              ||||||||||||||||||||
Sbjct: 117958 ctcgcgccggccggcgccgt 117939

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>gb|DQ067263.1| Kocuria rosea maltooligosyl trehalose synthase (treY) gene, partial
           cds
          Length = 2100

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 424 gcgccggagctcggccagcagcgc 447
           |||||||| |||||||||||||||
Sbjct: 768 gcgccggacctcggccagcagcgc 745

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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ctcggccagcagcgcctcga 452
              ||||||||||||||||||||
Sbjct: 914955 ctcggccagcagcgcctcga 914936

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 112      ccggctggctggctggcttc 131
                ||||||||||||||||||||
Sbjct: 30343012 ccggctggctggctggcttc 30342993

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     ctcgcgccggccggcgccgt 326
               ||||||||||||||||||||
Sbjct: 3295404 ctcgcgccggccggcgccgt 3295423



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     ctcgcgccggccggcgccgt 326
               ||||||||||||||||||||
Sbjct: 3148326 ctcgcgccggccggcgccgt 3148307

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 222      ggacgacggcggcggacctgcgcc 245
                ||||||||||||| ||||||||||
Sbjct: 19932926 ggacgacggcggccgacctgcgcc 19932903

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>gb|AC009183.5|AC009183 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone
            BACR39F04, complete sequence
          Length = 192055

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 114  ggctggctggctggcttcttggct 137
            |||||||||||||||| |||||||
Sbjct: 3315 ggctggctggctggctgcttggct 3292

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 421     gtcgcgccggagctcggcca 440
               ||||||||||||||||||||
Sbjct: 4989667 gtcgcgccggagctcggcca 4989648



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 306     cctcgcgccggccggcgccgtcgt 329
               ||||||||||||||||||| ||||
Sbjct: 3798875 cctcgcgccggccggcgccctcgt 3798898



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 309     cgcgccggccggcgccgtcg 328
               ||||||||||||||||||||
Sbjct: 1083714 cgcgccggccggcgccgtcg 1083733

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>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1018E06
          Length = 178499

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 222   ggacgacggcggcggacctgcgcc 245
             ||||||||||||| ||||||||||
Sbjct: 71266 ggacgacggcggccgacctgcgcc 71243

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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    tcgcgccggccggcgccgtc 327
              ||||||||||||||||||||
Sbjct: 293913 tcgcgccggccggcgccgtc 293894

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>gb|AE003685.5| Drosophila melanogaster chromosome 3R, section 23 of 118 of the
             complete sequence
          Length = 241476

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 114   ggctggctggctggcttcttggct 137
             |||||||||||||||| |||||||
Sbjct: 61930 ggctggctggctggctgcttggct 61907

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     ctcgcgccggccggcgccgt 326
               ||||||||||||||||||||
Sbjct: 3295325 ctcgcgccggccggcgccgt 3295344



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     ctcgcgccggccggcgccgt 326
               ||||||||||||||||||||
Sbjct: 3148247 ctcgcgccggccggcgccgt 3148228

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>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12,
             complete sequence
          Length = 160989

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   ccggctggctggctggcttc 131
             ||||||||||||||||||||
Sbjct: 92908 ccggctggctggctggcttc 92889

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>gb|AC135859.4| Mus musculus BAC clone RP24-151D9 from 10, complete sequence
          Length = 182809

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    ccccggctggctggctggct 129
              ||||||||||||||||||||
Sbjct: 127881 ccccggctggctggctggct 127862

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 431     agctcggccagcagcgcctc 450
               ||||||||||||||||||||
Sbjct: 2779469 agctcggccagcagcgcctc 2779488

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>emb|AL663027.9| Mouse DNA sequence from clone RP23-16P3 on chromosome 2, complete
             sequence
          Length = 219778

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   ggctggctggctggcttcttggct 137
             |||||||||||||||| |||||||
Sbjct: 23280 ggctggctggctggctgcttggct 23303

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>gb|AC124443.3| Mus musculus chromosome 18 clone RP24-178K3, complete sequence
          Length = 169326

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    cccggctggctggctggctt 130
              ||||||||||||||||||||
Sbjct: 111874 cccggctggctggctggctt 111893


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,612,008
Number of Sequences: 3902068
Number of extensions: 3612008
Number of successful extensions: 95343
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93177
Number of HSP's gapped (non-prelim): 2166
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result