ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl06a02 |
|---|---|
| Clone Library Name | barley_pub |
>SYD_SYNS9 (Q3AVS9) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 610 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -1 Query: 377 VSPTKIAVGDWVALPETHQLGLSNLLPVGIPR 282 V P+++ GDW ALP++ QL L+ GI R Sbjct: 183 VLPSRVCGGDWFALPQSPQLFKQLLMVGGIER 214
>SYD_PROMA (Q7V9I1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 605 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 371 PTKIAVGDWVALPETHQLGLSNLLPVGIPR 282 P+++ GDW ALP++ QL L+ GI R Sbjct: 185 PSRVCEGDWFALPQSPQLFKQLLMVGGIER 214
>SYD_GLOVI (Q7NJA4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 595 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 371 PTKIAVGDWVALPETHQLGLSNLLPVGIPR 282 P+++ GDW ALP++ QL L+ G R Sbjct: 182 PSRVNPGDWFALPQSPQLFKQLLMVAGFDR 211
>SYD_SYNPX (Q7U3K6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 610 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 377 VSPTKIAVGDWVALPETHQLGLSNLLPVGIPR 282 V P+++ G+W ALP++ QL L+ GI R Sbjct: 183 VLPSRVCGGEWFALPQSPQLFKQLLMVGGIER 214
>MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Actin cross-linking| family 7) Length = 5327 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = +1 Query: 295 TGSRLERPS**VSGRATQSPTAILVGDTPRSRSPAVTG 408 +GS+L+RP+ A S L GDT S SPA TG Sbjct: 5204 SGSKLKRPT-----PAFHSSRTSLAGDTSNSSSPASTG 5236
>SYD_SYNJB (Q2JMA8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 601 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -1 Query: 371 PTKIAVGDWVALPETHQLGLSNLLPVGIPR 282 P+++ G+W ALP++ QL L+ G+ R Sbjct: 194 PSRVNPGEWFALPQSPQLFKQLLMVAGVDR 223
>SYD_SYNJA (Q2JTZ2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 601 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -1 Query: 371 PTKIAVGDWVALPETHQLGLSNLLPVGIPR 282 P+++ G+W ALP++ QL L+ G+ R Sbjct: 194 PSRVNPGEWFALPQSPQLFKQLLMVAGVDR 223
>DP2L_HALSA (Q9HMX8) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)| [Contains: Hsp-NRC1 polC intein (Hsp-NRC1 pol2 intein)] Length = 1370 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 89 AGSVRPLGHKWDLHGAPREH 30 AG R LG+ D+HG P EH Sbjct: 813 AGQFRELGYNQDIHGDPLEH 832
>SYD_ANASP (Q8YUB6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 595 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -1 Query: 377 VSPTKIAVGDWVALPETHQLGLSNLLPVGIPR 282 V P+++ G+W ALP++ QL L+ G+ R Sbjct: 184 VLPSRVNPGEWFALPQSPQLFKQILMVSGLDR 215
>CYAD_BORPE (P11091) Protein cyaD| Length = 440 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 9/52 (17%) Frame = -3 Query: 177 REANEMAPMETTXXXXXXALQPNSTAPRARWI---------GATTWSQMGSS 49 R A P+ET +LQ +P ARW+ GA WS +G + Sbjct: 26 RPAGWFDPVETEFLPSALSLQERPISPTARWLARILMALAAGALVWSVVGKT 77
>RL2_CLOAB (Q97EI1) 50S ribosomal protein L2| Length = 277 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -1 Query: 395 GERLRGVSPTKIAVGDWVALPETHQLGLSNLLPV 294 GE+ ++PTK++VGD V + + N LP+ Sbjct: 99 GEKRYIIAPTKLSVGDTVVSGPDADIKIGNALPI 132
>SYD_SYNSC (Q3AGF9) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 609 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -1 Query: 371 PTKIAVGDWVALPETHQLGLSNLLPVGIPR 282 P+++ G+W ALP++ QL L+ GI R Sbjct: 185 PSRVCGGEWFALPQSPQLFKQLLMVGGIER 214
>DLX2A_BRARE (P50574) Homeobox protein Dlx2a (DLX-2) (Distal-less homeobox gene| 2a) Length = 270 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/46 (34%), Positives = 19/46 (41%) Frame = -3 Query: 234 SGTLPPAE*THPLPPLSTPREANEMAPMETTXXXXXXALQPNSTAP 97 SG PP HP PPL+ + M T + PNST P Sbjct: 195 SGESPP----HPSPPLAAAWDFAHSQRMNTVNSGLSQSSPPNSTTP 236
>SYD_PROMM (Q7V3X1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 606 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -1 Query: 371 PTKIAVGDWVALPETHQLGLSNLLPVGIPR 282 P+++ G+W ALP++ QL L+ G+ R Sbjct: 185 PSRVCSGEWFALPQSPQLFKQLLMVGGLER 214
>ZBTB9_HUMAN (Q96C00) Zinc finger and BTB domain-containing protein 9| Length = 473 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -3 Query: 234 SGTLPPAE*THPLPPLSTPRE--ANEMAPME 148 SG P HPLP +TPR+ E AP+E Sbjct: 241 SGVFPRPHGPHPLPMTATPRKLPEGESAPLE 271
>SYD_ANAVT (Q3MGL3) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 614 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -1 Query: 377 VSPTKIAVGDWVALPETHQLGLSNLLPVGIPR 282 V P+++ G+W ALP++ QL L+ G+ R Sbjct: 203 VLPSRVNPGEWFALPQSPQLFKQILMVSGMDR 234
>SYD_SYNY3 (P73851) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 599 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -1 Query: 371 PTKIAVGDWVALPETHQLGLSNLLPVGIPR 282 P+++ G+W ALP++ QL L+ G+ R Sbjct: 186 PSRVNPGEWYALPQSPQLFKQLLMVAGMDR 215
>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3| Length = 944 Score = 27.3 bits (59), Expect = 8.8 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Frame = -3 Query: 222 PPAE*THPL-----PPLSTPREANEMAP-METTXXXXXXALQPNSTAPRARWIGATTWSQ 61 PP + THPL P S+P + E+ P +E T AP A +TT Q Sbjct: 784 PPHDPTHPLAESPRPARSSPASSPELTPALEAT------------AAPAAPSGASTTRMQ 831 Query: 60 MGSSWRSP 37 +GSS P Sbjct: 832 IGSSTEPP 839
>SPAP_STRMU (P23504) Cell surface antigen I/II precursor [Contains: Cell| surface antigen I; Cell surface antigen II] Length = 1562 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = -3 Query: 93 ARWIGATTWSQMGSSWRSPRAPRVW 19 ARW T S+ GS W S AP W Sbjct: 745 ARWTMYTRASEPGSGWDSSDAPNSW 769
>B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) (Anion exchanger 3 brain isoform) Length = 1233 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +1 Query: 286 GIPTGSRLERPS**VSGRATQSPTAILVGDTPRSRSPAVTG 408 G+P + +P V R+ +SP + +PR+R+P V G Sbjct: 178 GLPGKAAFTKPLPSVGPRSDKSPQRSVSSSSPRARAPRVAG 218
>COFH_METTH (O26911) FO synthase subunit 2 (EC 2.5.1.-)| (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2) Length = 403 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%) Frame = -1 Query: 410 VPVTAGERLRG-----VSPTKIAVGDWVALPET-HQLGL 312 +P TA E L + PTK++ G+WV + ET H++G+ Sbjct: 210 MPGTAAEILDDDVRAVICPTKLSTGEWVEVIETAHRVGI 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,463,310 Number of Sequences: 219361 Number of extensions: 653096 Number of successful extensions: 2368 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2367 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
