ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl05h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_483003.1| Oryza sativa (japonica cultivar-group), mRNA 137 3e-29
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
3dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
4dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
5dbj|AK065903.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 7e-27
6emb|CR626926.1| Aegilops tauschii 46 0.086
7ref|NM_188963.2| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
8ref|XM_507234.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.4
9ref|NM_194659.1| Oryza sativa (japonica cultivar-group) putative... 42 1.4
10emb|CR734455.2|CNS0GTHI Tetraodon nigroviridis full-length cDNA 42 1.4
11emb|CR720927.2|CNS0GJ7P Tetraodon nigroviridis full-length cDNA 42 1.4
12emb|CR671250.2|CNS0FGWO Tetraodon nigroviridis full-length cDNA 42 1.4
13gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
14gb|AC074282.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
16dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17dbj|AK104119.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
18dbj|AK059408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
19gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 42 1.4
20gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
21gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 5.3
22gb|AE009362.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 5.3
23gb|AE008251.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 5.3
24gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 5.3
25gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.3
26gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, com... 40 5.3
27gb|AF546139.1|AF546140S2 Amycolatopsis orientalis PksE (pksE) an... 40 5.3
28dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.3
29emb|AL732357.3| Mouse DNA sequence from clone RP23-383K1 on chro... 40 5.3

>ref|XM_483003.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2730

 Score =  137 bits (69), Expect = 3e-29
 Identities = 165/197 (83%)
 Strand = Plus / Plus

                                                                       
Query: 203 gccagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcaga 262
           ||||||||||| ||||||| ||| ||||| |||| |||||||||||| || |||||||||
Sbjct: 46  gccagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcaga 105

                                                                       
Query: 263 agtgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctac 322
           ||||| |||||||| |||||| ||||||| ||| | |   ||| |||||||||| |||| 
Sbjct: 106 agtgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctat 165

                                                                       
Query: 323 ttaacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaattt 382
           || |  |||||| | || |||| |||||||||||||   |||| ||||||| ||||||||
Sbjct: 166 ttcaggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaattt 225

                            
Query: 383 aggagacagaggatagc 399
           |||||||||||| ||||
Sbjct: 226 aggagacagagggtagc 242



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  133 bits (67), Expect = 5e-28
 Identities = 163/195 (83%)
 Strand = Plus / Plus

                                                                            
Query: 205      cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 264
                ||||||||| ||||||| ||| ||||| |||| |||||||||||| || |||||||||||
Sbjct: 23827832 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 23827891

                                                                            
Query: 265      tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 324
                ||| |||||||| |||||| ||||||| ||| | |   ||| |||||||||| |||| ||
Sbjct: 23827892 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 23827951

                                                                            
Query: 325      aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 384
                 |  |||||| | || |||| |||||||||||||   |||| ||||||| ||||||||||
Sbjct: 23827952 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 23828011

                               
Query: 385      gagacagaggatagc 399
                |||||||||| ||||
Sbjct: 23828012 gagacagagggtagc 23828026



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 19       cccaccgcagcttccctccagatataaaccctatccctctc 59
                ||||||||  ||||||||| | |||||||||||||||||||
Sbjct: 23827053 cccaccgctacttccctcccggtataaaccctatccctctc 23827093



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 137      accgccgtggcgtcgcagccg 157
                |||||||||||||||||||||
Sbjct: 20452592 accgccgtggcgtcgcagccg 20452572



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>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0092C08
          Length = 131049

 Score =  133 bits (67), Expect = 5e-28
 Identities = 163/195 (83%)
 Strand = Plus / Plus

                                                                          
Query: 205    cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 264
              ||||||||| ||||||| ||| ||||| |||| |||||||||||| || |||||||||||
Sbjct: 117032 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 117091

                                                                          
Query: 265    tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 324
              ||| |||||||| |||||| ||||||| ||| | |   ||| |||||||||| |||| ||
Sbjct: 117092 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 117151

                                                                          
Query: 325    aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 384
               |  |||||| | || |||| |||||||||||||   |||| ||||||| ||||||||||
Sbjct: 117152 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 117211

                             
Query: 385    gagacagaggatagc 399
              |||||||||| ||||
Sbjct: 117212 gagacagagggtagc 117226



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 19     cccaccgcagcttccctccagatataaaccctatccctctc 59
              ||||||||  ||||||||| | |||||||||||||||||||
Sbjct: 116253 cccaccgctacttccctcccggtataaaccctatccctctc 116293



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>dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1111_H02
          Length = 108603

 Score =  133 bits (67), Expect = 5e-28
 Identities = 163/195 (83%)
 Strand = Plus / Plus

                                                                         
Query: 205   cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 264
             ||||||||| ||||||| ||| ||||| |||| |||||||||||| || |||||||||||
Sbjct: 19536 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 19595

                                                                         
Query: 265   tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 324
             ||| |||||||| |||||| ||||||| ||| | |   ||| |||||||||| |||| ||
Sbjct: 19596 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 19655

                                                                         
Query: 325   aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 384
              |  |||||| | || |||| |||||||||||||   |||| ||||||| ||||||||||
Sbjct: 19656 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 19715

                            
Query: 385   gagacagaggatagc 399
             |||||||||| ||||
Sbjct: 19716 gagacagagggtagc 19730



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 19    cccaccgcagcttccctccagatataaaccctatccctctc 59
             ||||||||  ||||||||| | |||||||||||||||||||
Sbjct: 18757 cccaccgctacttccctcccggtataaaccctatccctctc 18797



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>dbj|AK065903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049J03, full
           insert sequence
          Length = 2736

 Score =  129 bits (65), Expect = 7e-27
 Identities = 164/197 (83%)
 Strand = Plus / Plus

                                                                       
Query: 203 gccagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcaga 262
           ||||||||||| ||||||| ||| ||||| |||| |||||||||||| || |||||||||
Sbjct: 187 gccagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcaga 246

                                                                       
Query: 263 agtgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctac 322
           ||||| |||||||| |||||| ||||||| ||| | |   ||| |||||||||| || | 
Sbjct: 247 agtgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagccat 306

                                                                       
Query: 323 ttaacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaattt 382
           || |  |||||| | || |||| |||||||||||||   |||| ||||||| ||||||||
Sbjct: 307 ttcaggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaattt 366

                            
Query: 383 aggagacagaggatagc 399
           |||||||||||| ||||
Sbjct: 367 aggagacagagggtagc 383



 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 29 cttccctccagatataaaccctatccctctc 59
          ||||||||| | |||||||||||||||||||
Sbjct: 9  cttccctcccggtataaaccctatccctctc 39



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>emb|CR626926.1| Aegilops tauschii
          Length = 94421

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 88    cccgcgccgatctcgtcgtcggc 110
             |||||||||||||||||||||||
Sbjct: 58809 cccgcgccgatctcgtcgtcggc 58787



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>ref|NM_188963.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1145

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 137 accgccgtggcgtcgcagccg 157
           |||||||||||||||||||||
Sbjct: 133 accgccgtggcgtcgcagccg 113



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>ref|XM_507234.1| PREDICTED Oryza sativa (japonica cultivar-group), P0456B03.120 mRNA
          Length = 1152

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 137 accgccgtggcgtcgcagccg 157
           |||||||||||||||||||||
Sbjct: 136 accgccgtggcgtcgcagccg 116



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>ref|NM_194659.1| Oryza sativa (japonica cultivar-group) putative
            anthocyanidin-3-glucoside rhamnosyltransferase
            (OSJNBa0049K09.17), mRNA
          Length = 1479

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 135  cgaccgccgtggcgtcgcagccgcg 159
            |||||||| ||||||||||||||||
Sbjct: 1266 cgaccgccatggcgtcgcagccgcg 1290



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>emb|CR734455.2|CNS0GTHI Tetraodon nigroviridis full-length cDNA
          Length = 719

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 120 cagcaaccccgatggcgaccg 140
           |||||||||||||||||||||
Sbjct: 354 cagcaaccccgatggcgaccg 334



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>emb|CR720927.2|CNS0GJ7P Tetraodon nigroviridis full-length cDNA
          Length = 620

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 120 cagcaaccccgatggcgaccg 140
           |||||||||||||||||||||
Sbjct: 255 cagcaaccccgatggcgaccg 235



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>emb|CR671250.2|CNS0FGWO Tetraodon nigroviridis full-length cDNA
          Length = 731

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 120 cagcaaccccgatggcgaccg 140
           |||||||||||||||||||||
Sbjct: 354 cagcaaccccgatggcgaccg 334



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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 135     cgaccgccgtggcgtcgcagccgcg 159
               |||||||| ||||||||||||||||
Sbjct: 1386002 cgaccgccatggcgtcgcagccgcg 1386026



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>gb|AC074282.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0049K09, complete sequence
          Length = 146576

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 135   cgaccgccgtggcgtcgcagccgcg 159
             |||||||| ||||||||||||||||
Sbjct: 85332 cgaccgccatggcgtcgcagccgcg 85356



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 135     cgaccgccgtggcgtcgcagccgcg 159
               |||||||| ||||||||||||||||
Sbjct: 1386002 cgaccgccatggcgtcgcagccgcg 1386026



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>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0456B03
          Length = 152973

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 137   accgccgtggcgtcgcagccg 157
             |||||||||||||||||||||
Sbjct: 83222 accgccgtggcgtcgcagccg 83202



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>dbj|AK104119.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B12, full
           insert sequence
          Length = 1145

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 137 accgccgtggcgtcgcagccg 157
           |||||||||||||||||||||
Sbjct: 133 accgccgtggcgtcgcagccg 113



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>dbj|AK059408.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C04, full
           insert sequence
          Length = 1152

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 137 accgccgtggcgtcgcagccg 157
           |||||||||||||||||||||
Sbjct: 136 accgccgtggcgtcgcagccg 116



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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 284     aaaaaattccattcccaaatttcta 308
               ||||||||| |||||||||||||||
Sbjct: 1528447 aaaaaattcaattcccaaatttcta 1528423



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 135     cgaccgccgtggcgtcgcagccgcg 159
               |||||||| ||||||||||||||||
Sbjct: 1385999 cgaccgccatggcgtcgcagccgcg 1386023



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   tggcgaccgccgtggcgtcg 151
             ||||||||||||||||||||
Sbjct: 68893 tggcgaccgccgtggcgtcg 68912



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>gb|AE009362.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 132 of
            187 of the complete sequence
          Length = 11612

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  cgatggcgaccgccgtggcg 148
            ||||||||||||||||||||
Sbjct: 2204 cgatggcgaccgccgtggcg 2223



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>gb|AE008251.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 55 of 187
             of the complete sequence
          Length = 19961

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   cgatggcgaccgccgtggcg 148
             ||||||||||||||||||||
Sbjct: 14334 cgatggcgaccgccgtggcg 14315



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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 89      ccgcgccgatctcgtcgtcg 108
               ||||||||||||||||||||
Sbjct: 3208288 ccgcgccgatctcgtcgtcg 3208307



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      gatctcgtcgtcggcctcga 115
               ||||||||||||||||||||
Sbjct: 1541173 gatctcgtcgtcggcctcga 1541154



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>gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, complete sequence
          Length = 181955

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 299    caaatttctaagagaaagtgctac 322
              ||||||||| ||||||||||||||
Sbjct: 162945 caaatttcttagagaaagtgctac 162922



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>gb|AF546139.1|AF546140S2 Amycolatopsis orientalis PksE (pksE) and TebC (tebC) genes, complete
            cds
          Length = 6262

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 101  cgtcgtcggcctcgaggagcagca 124
            |||||||||| |||||||||||||
Sbjct: 1489 cgtcgtcggcgtcgaggagcagca 1466



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 89      ccgcgccgatctcgtcgtcg 108
               ||||||||||||||||||||
Sbjct: 2805030 ccgcgccgatctcgtcgtcg 2805011



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>emb|AL732357.3| Mouse DNA sequence from clone RP23-383K1 on chromosome 2, complete
             sequence
          Length = 101531

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    gagttctttcccaccgcagc 29
             ||||||||||||||||||||
Sbjct: 45322 gagttctttcccaccgcagc 45303


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,281,809
Number of Sequences: 3902068
Number of extensions: 3281809
Number of successful extensions: 58710
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58328
Number of HSP's gapped (non-prelim): 377
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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