Clone Name | bastl05h11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_483003.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2730 Score = 137 bits (69), Expect = 3e-29 Identities = 165/197 (83%) Strand = Plus / Plus Query: 203 gccagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcaga 262 ||||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||| Sbjct: 46 gccagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcaga 105 Query: 263 agtgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctac 322 ||||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| Sbjct: 106 agtgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctat 165 Query: 323 ttaacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaattt 382 || | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||| Sbjct: 166 ttcaggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaattt 225 Query: 383 aggagacagaggatagc 399 |||||||||||| |||| Sbjct: 226 aggagacagagggtagc 242
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 133 bits (67), Expect = 5e-28 Identities = 163/195 (83%) Strand = Plus / Plus Query: 205 cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 264 ||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||||| Sbjct: 23827832 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 23827891 Query: 265 tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 324 ||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| || Sbjct: 23827892 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 23827951 Query: 325 aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 384 | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||||| Sbjct: 23827952 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 23828011 Query: 385 gagacagaggatagc 399 |||||||||| |||| Sbjct: 23828012 gagacagagggtagc 23828026 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 19 cccaccgcagcttccctccagatataaaccctatccctctc 59 |||||||| ||||||||| | ||||||||||||||||||| Sbjct: 23827053 cccaccgctacttccctcccggtataaaccctatccctctc 23827093 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 accgccgtggcgtcgcagccg 157 ||||||||||||||||||||| Sbjct: 20452592 accgccgtggcgtcgcagccg 20452572
>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08 Length = 131049 Score = 133 bits (67), Expect = 5e-28 Identities = 163/195 (83%) Strand = Plus / Plus Query: 205 cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 264 ||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||||| Sbjct: 117032 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 117091 Query: 265 tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 324 ||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| || Sbjct: 117092 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 117151 Query: 325 aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 384 | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||||| Sbjct: 117152 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 117211 Query: 385 gagacagaggatagc 399 |||||||||| |||| Sbjct: 117212 gagacagagggtagc 117226 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 19 cccaccgcagcttccctccagatataaaccctatccctctc 59 |||||||| ||||||||| | ||||||||||||||||||| Sbjct: 116253 cccaccgctacttccctcccggtataaaccctatccctctc 116293
>dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_H02 Length = 108603 Score = 133 bits (67), Expect = 5e-28 Identities = 163/195 (83%) Strand = Plus / Plus Query: 205 cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 264 ||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||||| Sbjct: 19536 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 19595 Query: 265 tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 324 ||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| || Sbjct: 19596 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 19655 Query: 325 aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 384 | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||||| Sbjct: 19656 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 19715 Query: 385 gagacagaggatagc 399 |||||||||| |||| Sbjct: 19716 gagacagagggtagc 19730 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 19 cccaccgcagcttccctccagatataaaccctatccctctc 59 |||||||| ||||||||| | ||||||||||||||||||| Sbjct: 18757 cccaccgctacttccctcccggtataaaccctatccctctc 18797
>dbj|AK065903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049J03, full insert sequence Length = 2736 Score = 129 bits (65), Expect = 7e-27 Identities = 164/197 (83%) Strand = Plus / Plus Query: 203 gccagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcaga 262 ||||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||| Sbjct: 187 gccagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcaga 246 Query: 263 agtgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctac 322 ||||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| || | Sbjct: 247 agtgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagccat 306 Query: 323 ttaacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaattt 382 || | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||| Sbjct: 307 ttcaggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaattt 366 Query: 383 aggagacagaggatagc 399 |||||||||||| |||| Sbjct: 367 aggagacagagggtagc 383 Score = 46.1 bits (23), Expect = 0.086 Identities = 29/31 (93%) Strand = Plus / Plus Query: 29 cttccctccagatataaaccctatccctctc 59 ||||||||| | ||||||||||||||||||| Sbjct: 9 cttccctcccggtataaaccctatccctctc 39
>emb|CR626926.1| Aegilops tauschii Length = 94421 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Minus Query: 88 cccgcgccgatctcgtcgtcggc 110 ||||||||||||||||||||||| Sbjct: 58809 cccgcgccgatctcgtcgtcggc 58787
>ref|NM_188963.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1145 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 accgccgtggcgtcgcagccg 157 ||||||||||||||||||||| Sbjct: 133 accgccgtggcgtcgcagccg 113
>ref|XM_507234.1| PREDICTED Oryza sativa (japonica cultivar-group), P0456B03.120 mRNA Length = 1152 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 accgccgtggcgtcgcagccg 157 ||||||||||||||||||||| Sbjct: 136 accgccgtggcgtcgcagccg 116
>ref|NM_194659.1| Oryza sativa (japonica cultivar-group) putative anthocyanidin-3-glucoside rhamnosyltransferase (OSJNBa0049K09.17), mRNA Length = 1479 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 cgaccgccgtggcgtcgcagccgcg 159 |||||||| |||||||||||||||| Sbjct: 1266 cgaccgccatggcgtcgcagccgcg 1290
>emb|CR734455.2|CNS0GTHI Tetraodon nigroviridis full-length cDNA Length = 719 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 cagcaaccccgatggcgaccg 140 ||||||||||||||||||||| Sbjct: 354 cagcaaccccgatggcgaccg 334
>emb|CR720927.2|CNS0GJ7P Tetraodon nigroviridis full-length cDNA Length = 620 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 cagcaaccccgatggcgaccg 140 ||||||||||||||||||||| Sbjct: 255 cagcaaccccgatggcgaccg 235
>emb|CR671250.2|CNS0FGWO Tetraodon nigroviridis full-length cDNA Length = 731 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 cagcaaccccgatggcgaccg 140 ||||||||||||||||||||| Sbjct: 354 cagcaaccccgatggcgaccg 334
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 cgaccgccgtggcgtcgcagccgcg 159 |||||||| |||||||||||||||| Sbjct: 1386002 cgaccgccatggcgtcgcagccgcg 1386026
>gb|AC074282.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0049K09, complete sequence Length = 146576 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 cgaccgccgtggcgtcgcagccgcg 159 |||||||| |||||||||||||||| Sbjct: 85332 cgaccgccatggcgtcgcagccgcg 85356
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 cgaccgccgtggcgtcgcagccgcg 159 |||||||| |||||||||||||||| Sbjct: 1386002 cgaccgccatggcgtcgcagccgcg 1386026
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 accgccgtggcgtcgcagccg 157 ||||||||||||||||||||| Sbjct: 83222 accgccgtggcgtcgcagccg 83202
>dbj|AK104119.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B12, full insert sequence Length = 1145 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 accgccgtggcgtcgcagccg 157 ||||||||||||||||||||| Sbjct: 133 accgccgtggcgtcgcagccg 113
>dbj|AK059408.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C04, full insert sequence Length = 1152 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 accgccgtggcgtcgcagccg 157 ||||||||||||||||||||| Sbjct: 136 accgccgtggcgtcgcagccg 116
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 284 aaaaaattccattcccaaatttcta 308 ||||||||| ||||||||||||||| Sbjct: 1528447 aaaaaattcaattcccaaatttcta 1528423
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 cgaccgccgtggcgtcgcagccgcg 159 |||||||| |||||||||||||||| Sbjct: 1385999 cgaccgccatggcgtcgcagccgcg 1386023
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tggcgaccgccgtggcgtcg 151 |||||||||||||||||||| Sbjct: 68893 tggcgaccgccgtggcgtcg 68912
>gb|AE009362.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 132 of 187 of the complete sequence Length = 11612 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cgatggcgaccgccgtggcg 148 |||||||||||||||||||| Sbjct: 2204 cgatggcgaccgccgtggcg 2223
>gb|AE008251.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 55 of 187 of the complete sequence Length = 19961 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cgatggcgaccgccgtggcg 148 |||||||||||||||||||| Sbjct: 14334 cgatggcgaccgccgtggcg 14315
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ccgcgccgatctcgtcgtcg 108 |||||||||||||||||||| Sbjct: 3208288 ccgcgccgatctcgtcgtcg 3208307
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gatctcgtcgtcggcctcga 115 |||||||||||||||||||| Sbjct: 1541173 gatctcgtcgtcggcctcga 1541154
>gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, complete sequence Length = 181955 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 299 caaatttctaagagaaagtgctac 322 ||||||||| |||||||||||||| Sbjct: 162945 caaatttcttagagaaagtgctac 162922
>gb|AF546139.1|AF546140S2 Amycolatopsis orientalis PksE (pksE) and TebC (tebC) genes, complete cds Length = 6262 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 cgtcgtcggcctcgaggagcagca 124 |||||||||| ||||||||||||| Sbjct: 1489 cgtcgtcggcgtcgaggagcagca 1466
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ccgcgccgatctcgtcgtcg 108 |||||||||||||||||||| Sbjct: 2805030 ccgcgccgatctcgtcgtcg 2805011
>emb|AL732357.3| Mouse DNA sequence from clone RP23-383K1 on chromosome 2, complete sequence Length = 101531 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 gagttctttcccaccgcagc 29 |||||||||||||||||||| Sbjct: 45322 gagttctttcccaccgcagc 45303 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,281,809 Number of Sequences: 3902068 Number of extensions: 3281809 Number of successful extensions: 58710 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58328 Number of HSP's gapped (non-prelim): 377 length of query: 399 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 377 effective length of database: 17,147,199,772 effective search space: 6464494314044 effective search space used: 6464494314044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)