ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl05h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRAF2_HUMAN (Q12933) TNF receptor-associated factor 2 (Tumor nec... 29 4.9
2BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11.... 29 4.9

>TRAF2_HUMAN (Q12933) TNF receptor-associated factor 2 (Tumor necrosis factor|
           type 2 receptor-associated protein 3)
          Length = 501

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 332 CSQKKIPRSSFHTIIEECIQIQLPRKIIGLGLPEAGRG 219
           C +KKIPR  F   ++ C + ++P +   +G  E   G
Sbjct: 192 CGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEG 229



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>BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11.1) (NY-REN-26|
           antigen)
          Length = 1271

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 325 RRRYREVPFTQLLKSVSKSSYREK**ALGFQRQAEAPTGASLP 197
           + R+R +    LL    KS  R++    GF+R A+AP GAS P
Sbjct: 51  QERFRMIYLQTLLAKEKKSYDRQR---WGFRRAAQAPDGASEP 90


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,683,744
Number of Sequences: 219361
Number of extensions: 664402
Number of successful extensions: 1823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1822
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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