>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)|
          Length = 1388

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -2

Query: 180 ALQPWQPSPSTSQRG---VPLLLRARRKPSRGAKSPS 79
           A+ PW+PSPS ++     VP+L  +  KPS    SPS
Sbjct: 75  AIAPWEPSPSPTETAWTVVPVLKSSALKPSTVQFSPS 111

>GALT3_CAEEL (P34678) Polypeptide N-acetylgalactosaminyltransferase 3 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           3) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 3) (pp-GaNTase 3)
           (GalNAc-T1)
          Length = 612

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 371 PITVIVSINLLGCQTASASTWNQKTRASSFSWKTVRRIDAPGGGEDRGRELAARGVAGG 195
           PI  ++S +     TAS +TW       +F W  V + +    G DR   +    +AGG
Sbjct: 290 PIIDVISDDTFEYVTASETTWGGFNWHLNFRWYAVPKRELNRRGSDRSMPIQTPTIAGG 348

>CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6|
          Length = 704

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 257 DAPGGGEDRGRELAARGVAGGE---EGPARSNHGSHLPQ 150
           +A GGG DRG E  ARG  G     E    +  G+ +PQ
Sbjct: 59  EAGGGGPDRGPEAEARGTRGAHGETEAEEGAPEGAEVPQ 97

>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1857

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 183  RALLAARYSPRGELAAAILSPARRVDSPHSLPAERGCP 296
            R ++    SP GE A +I +P     +P SLPA   CP
Sbjct: 1053 REVVVRTMSPHGESADSIPAPITPALAPASLPARVSCP 1090

>B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -2

Query: 171 PWQPSPSTSQRGVPLLLR----ARRKPSRGAKSPSRQ 73
           P QPSP+T+   V   L+    A RKP R + SP  Q
Sbjct: 140 PQQPSPATTPSAVQFFLQEDEGAERKPERTSPSPPTQ 176

>TRIM7_MOUSE (Q923T7) Tripartite motif protein 7 (Glycogenin-interacting|
           protein)
          Length = 510

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 228 AAILSPARRVDSPHSLPAERGCPRFLVPRRGAGSLASE 341
           AA++S  RR   P + P ERG P   VP R A +  S+
Sbjct: 96  AAVVSLLRRFSLPPTAPGERGTP--AVPARAAAARCSQ 131

>RS4_LACAC (Q5FKX2) 30S ribosomal protein S4|
          Length = 203

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -3

Query: 299 TRASSFSWKTVRRIDAPGGGEDRGRELAARGVAGGEEGPARSNHGSHLPQPL 144
           +R +  SWK  RR+     G   G+ELA R  A G+ GP      S   Q L
Sbjct: 2   SRYTGPSWKRSRRLGISLSGT--GKELARRNYAPGQHGPNSRGRLSEYGQQL 51

>RS4_BACSK (Q5WEB9) 30S ribosomal protein S4|
          Length = 200

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 299 TRASSFSWKTVRRIDAPGGGEDRGRELAARGVAGGEEGP 183
           +R +  SWK  RR+     G   G+ELA R  A G+ GP
Sbjct: 2   SRYTGPSWKLSRRLGVSLSGT--GKELAKRPYAPGQHGP 38

>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (Motch B) [Contains: Notch 2 extracellular truncation;
            Notch 2 intracellular domain]
          Length = 2470

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -3

Query: 323  SASTWNQKTRASSFSWKTVRRIDAPGGGEDRGRELAARGVAGGEEGPARSNHGSHLPQP 147
            S   W+  +  S+  W  V     PGGG             GG+ GP     G+H+ +P
Sbjct: 2420 SPDQWSSSSPHSASDWSDVTTSPTPGGG------------GGGQRGP-----GTHMSEP 2461

>PRTP_HCMVA (P16724) Probable processing and transport protein UL56 (HFLF0|
           protein)
          Length = 850

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 174 QPWQPS--PSTSQRGVPLLLRARRKPSRGAKS 85
           +PW PS  PS+S  GV   +RA RK  R A S
Sbjct: 799 RPWLPSPYPSSSTAGVSRRVRATRKRPRRASS 830

>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            [Contains: Notch 2 extracellular truncation; Notch 2
            intracellular domain]
          Length = 2471

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -3

Query: 323  SASTWNQKTRASSFSWKTVRRIDAPGGGEDRGRELAARGVAGGEEGPARSNHGSHLPQP 147
            S   W+  +  S+  W  V     PGGG             GG+ GP     G+H+ +P
Sbjct: 2421 SPDQWSSSSPHSASDWSDVTTSPTPGGG------------GGGQRGP-----GTHMSEP 2462

>ICLN_XENLA (P54106) Methylosome subunit pICln (Chloride conductance regulatory|
           protein ICln) (I(Cln))
          Length = 241

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 393 SSLRFAPPNHGDSLHQFARMPDCQRLDVEPKNA 295
           + +RF P    D    F+ M DCQ L  +P++A
Sbjct: 113 TEIRFVPGEKSDLGEMFSAMCDCQALHPDPEDA 145

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 24.6 bits (52), Expect(2) = 6.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 248 GGGEDRGRELAARGVAGGEEGPARSNHG 165
           G     GR    R   GG  GPA +N G
Sbjct: 482 GAARPAGRPSGGRPGPGGNRGPASANRG 509



 Score = 21.6 bits (44), Expect(2) = 6.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 94  GEEPQPPSGKRRLPYGGATAG 32
           G   +PP G  R P GG   G
Sbjct: 529 GPGGRPPGGGNRRPPGGGNRG 549

>HXD9_HUMAN (P28356) Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2)|
          Length = 342

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/74 (22%), Positives = 21/74 (28%)
 Frame = -3

Query: 248 GGGEDRGRELAARGVAGGEEGPARSNHGSHLPQPLSAACPCCSVXXXXXXXXXXXXXXXX 69
           GGG   G     RG + G  GPA   H    P+  +A  P  +                 
Sbjct: 121 GGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKR 180

Query: 68  XXEVALRWCDGRGG 27
                 R   G  G
Sbjct: 181 TECSVARESQGSSG 194

>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)|
           (Transcriptional coactivator Aly/REF) (bZIP-enhancing
           factor BEF)
          Length = 256

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 248 GGGEDRGRELAARGVAGGEEGPARSNHG 165
           GGG  RGR  +  G  GG +  AR N G
Sbjct: 23  GGGRGRGRAGSQGGRGGGAQAAARVNRG 50

>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
 Frame = -3

Query: 272 TVRRIDA-----PGGGEDRGRELAARGVAGGEEGPA--RSNHGSHLPQPLSAA 135
           T R +DA      GG  D G  + A G AGG  G      + G+  PQP S A
Sbjct: 220 TGRNVDAGGSIDAGGSVDAGGSMDAEGPAGGAHGAGGEPQDLGAGSPQPRSEA 272

>AGAL_SCHPO (Q9URZ0) Probable alpha-galactosidase precursor (EC 3.2.1.22)|
           (Melibiase) (Alpha-D-galactoside galactohydrolase)
          Length = 436

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +3

Query: 324 GSLASEQIDGDYHRDWGV 377
           GSL  EQID D   DWGV
Sbjct: 131 GSLNHEQIDADTFADWGV 148

>GRIK4_RAT (Q01812) Glutamate receptor, ionotropic kainate 4 precursor|
           (Glutamate receptor KA-1) (KA1)
          Length = 956

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 100 AGGEEPQPPSGKRRLPYGGATAGAAARCDGG 8
           +GG  PQPP  + R P G AT      C  G
Sbjct: 866 SGGLPPQPPVLEERRPRGTATLSNGKLCGAG 896

>HEM6_XYLFA (Q9PHC7) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)|
           (Coproporphyrinogen III oxidase, aerobic)
           (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 305

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +3

Query: 282 ERGCPRFLVPR-----RGAGSLASEQIDGDYHRDWGVQNA 386
           +R C  + V R     RG G L  + +D D+ RD+  Q A
Sbjct: 164 KRWCDEYFVLRHRNETRGVGGLFFDDLDKDFERDFAYQRA 203

>LPXK_IDILO (Q5QU37) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 329

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +3

Query: 174 GARRALLAARYSPRGELAAAIL---SPARRVDSPHSLPAERGCPRFLVPRRG-AGSLASE 341
           G    +++  Y  +G     +L   SP +  D P  +    GCP  + P+R  A  L +E
Sbjct: 79  GWNPGIISRGYGAKGPFPYEVLESDSPEKAGDEPLLMRRRTGCPVVIAPKRAQAAKLMAE 138

Query: 342 Q 344
           Q
Sbjct: 139 Q 139

>BAB1_DROME (Q9W0K7) Protein bric-a-brac 1|
          Length = 977

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 109 KTLAGGEEPQPPSGKRRLPYGGATAGAAAR 20
           +T      P  P+G  R P G A A AAAR
Sbjct: 415 QTAGSAHHPASPAGDSRFPLGPAAAMAAAR 444

>MYSB_ACACA (P19706) Myosin heavy chain IB (Myosin heavy chain IL)|
          Length = 1147

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = -3

Query: 332  QTASASTWNQKTRASSFSWKTVRRIDAPGGGEDRGRELAARGVAGGEEGPARSNHGSHLP 153
            Q   A+   ++T +S  +W         GGG  RG     RG AGG  G      G    
Sbjct: 895  QIGIATGLPKETDSSPPNWTPSGGGGGYGGG--RGGGGGGRGAAGGGRGGFGGGGGGGYS 952

Query: 152  QPLSAACPCCSV 117
            QP++ A P   V
Sbjct: 953  QPVAQAQPVAQV 964

>CT111_PONPY (Q5RD08) Protein C20orf111 homolog|
          Length = 292

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/85 (24%), Positives = 32/85 (37%)
 Frame = -3

Query: 383 VLHPPITVIVSINLLGCQTASASTWNQKTRASSFSWKTVRRIDAPGGGEDRGRELAARGV 204
           VLHPP         + C T ++S+ +Q    S        + D+P G    G        
Sbjct: 86  VLHPP-------KFIHCSTIASSSSSQLKHKS--------QTDSPDGSSGLGISSPKEFS 130

Query: 203 AGGEEGPARSNHGSHLPQPLSAACP 129
           AG       +NH   + +PL  + P
Sbjct: 131 AGESSASLDANHTGAVVEPLRTSVP 155

>OPN4_HUMAN (Q9UHM6) Melanopsin (Opsin-4)|
          Length = 478

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 259 IRRTVFQLKEDARVFWFHVEALAVW 333
           IRR    L  ++ V W H+EA AVW
Sbjct: 405 IRRRQESLGSESEVGWTHMEAAAVW 429

>TBX18_HUMAN (O95935) T-box transcription factor TBX18 (T-box protein 18)|
          Length = 607

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 257 DAPGGGEDRGRELAARGVAGGEEGPARSNHGSHLPQPLSA 138
           +A G  +D G    +RG   GE+G +  + G+ LP P  A
Sbjct: 45  EAAGAVDDGG---CSRGGGAGEKGSSEGDEGAALPPPAGA 81

>ACVS_NOCLA (P27743) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase|
            (EC 6.3.2.26)
            (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine
            synthetase) (ACV synthetase) (ACVS)
          Length = 3649

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 95   PREGFRRARSSRGTPR*EVEGDGCHGWSAQ 184
            P   F   R++   PR  VE   CH WSAQ
Sbjct: 2896 PSADFSPKRAAYAAPRDRVEARLCHLWSAQ 2925


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,527,363
Number of Sequences: 219361
Number of extensions: 936237
Number of successful extensions: 3546
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3540
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)