>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA|
           cleavage complex II protein Pcf11) (Fragment)
          Length = 1654

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 31/76 (40%), Positives = 43/76 (56%)
 Frame = +3

Query: 234 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 413
           Y+ +L +LTFN KP I  LTI+A ++                 + P  +KLP +YL+DSI
Sbjct: 121 YQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTA-KAPSSEKLPVMYLMDSI 179

Query: 414 VKNIGREYVADFATRL 461
           VKN+GREY+  F   L
Sbjct: 180 VKNVGREYLTAFTKNL 195

>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I|
          Length = 638

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 33/76 (43%), Positives = 37/76 (48%)
 Frame = +3

Query: 234 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 413
           Y  AL +LTFN KPII  LT IA Q                  + P   KLP+LYLLDSI
Sbjct: 8   YLSALEDLTFNSKPIIHTLTYIA-QENEPYAISIVNAIEKHIQKCPPNCKLPALYLLDSI 66

Query: 414 VKNIGREYVADFATRL 461
            KN+G  Y   F   L
Sbjct: 67  SKNLGAPYTYFFGLHL 82

>PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I)|
          Length = 626

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 29/80 (36%), Positives = 40/80 (50%)
 Frame = +3

Query: 222 VVGVYKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYL 401
           +V  +   L ELTFN +PIIT LT +A ++                  +P +QKL + Y 
Sbjct: 8   IVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMP-KQKLYAFYA 66

Query: 402 LDSIVKNIGREYVADFATRL 461
           LDSI KN+G  Y   F+  L
Sbjct: 67  LDSICKNVGSPYTIYFSRNL 86

>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +3

Query: 234 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 413
           Y+E LAEL  N K  I  LTI+A                      P  QKL  +Y+ DSI
Sbjct: 11  YRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHLTTCSP-SQKLLVMYVCDSI 69

Query: 414 VKNIGR--EYVADFATRL 461
           +KN+ +  +Y A FA ++
Sbjct: 70  LKNVKKPNDYDALFARKI 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,375,194
Number of Sequences: 219361
Number of extensions: 566441
Number of successful extensions: 1618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)