>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score =  104 bits (260), Expect = 5e-23
 Identities = 54/90 (60%), Positives = 69/90 (76%)
 Frame = +3

Query: 84  QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMP 263
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK  YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 264 ESELKKYMADILSVLALTMSAEGERESLRY 353
             E K++ ADI+SVLA+TMS  GERE L+Y
Sbjct: 115 PGENKRFAADIISVLAMTMS--GERECLKY 142

>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score =  102 bits (255), Expect = 2e-22
 Identities = 54/90 (60%), Positives = 68/90 (75%)
 Frame = +3

Query: 84  QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMP 263
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK  YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 264 ESELKKYMADILSVLALTMSAEGERESLRY 353
             E K + ADI+SVLA+TMS  GERE L+Y
Sbjct: 115 PGENKCFAADIISVLAMTMS--GERECLKY 142

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 46/89 (51%), Positives = 61/89 (68%)
 Frame = +3

Query: 87  LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 266
           LEL V   QD  P +   +L  +++ IR++TSSMT+VPKPLKFLRPHY TL   Y+S P+
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTLVKIYDSWPQ 116

Query: 267 SELKKYMADILSVLALTMSAEGERESLRY 353
           S  K  +ADILSVL ++ S   + ESL+Y
Sbjct: 117 SPQKTQLADILSVLGMSYSNTSKHESLKY 145

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 41/89 (46%), Positives = 62/89 (69%)
 Frame = +3

Query: 87  LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 266
           LEL V R ++ D  +   +L ++++ I+++TSSMT+VPKPLKFLRP Y  L + Y+   +
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCSIYDKWTD 107

Query: 267 SELKKYMADILSVLALTMSAEGERESLRY 353
             LK  +AD+LS+LA+T S  G+ +SLRY
Sbjct: 108 PNLKSSLADVLSILAMTYSENGKHDSLRY 136

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 83.2 bits (204), Expect = 1e-16
 Identities = 38/81 (46%), Positives = 58/81 (71%)
 Frame = +3

Query: 111 QDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPESELKKYMA 290
           Q+ D  + + ALE+M+  I+++TSSMT+VPKPLKFLRPHY T+   Y+  P  + K  +A
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETMTKLYDEWPAGDDKSSLA 107

Query: 291 DILSVLALTMSAEGERESLRY 353
           D+LSV+ +T S E  +++L+Y
Sbjct: 108 DVLSVIGMTYSDEDRQDTLKY 128

>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 37/89 (41%), Positives = 56/89 (62%)
 Frame = +3

Query: 87  LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 266
           LE+ V    + D  +    L  +++ I+++TSSMT+VPKPLKFLRP Y  L   Y+   +
Sbjct: 49  LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDLCKAYDKWSD 108

Query: 267 SELKKYMADILSVLALTMSAEGERESLRY 353
            + K  +AD+LSVLA+T S   + +SLR+
Sbjct: 109 KDQKSSLADMLSVLAMTYSDTHQHDSLRF 137

>AMIB_ECOLI (P26365) N-acetylmuramoyl-L-alanine amidase amiB precursor (EC|
           3.5.1.28)
          Length = 445

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -2

Query: 308 QHRQYVSHVLL*LRFWHTFVVGFKGSIVWAEELQRLGDRRHRACS*TNLLPHALEGEPLH 129
           Q   Y+S  +L L+F H+  VG+  +     +LQR+G+   R               P H
Sbjct: 320 QSDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHKR--------------RPEH 365

Query: 128 AGIHVLRPHDV 96
           A + VLR  D+
Sbjct: 366 ASLGVLRSPDI 376

>UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains and ankyrin|
           repeats protein (Nucling) (Nuclear membrane-binding
           protein)
          Length = 1411

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 84  QLELYVVRAQDVDPGVQ-RLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESM 260
           Q ++Y    Q   PG+   +   SM + +  +  S TS  +  + L+    TL+TYY+S 
Sbjct: 403 QGQMYTTEPQCASPGIPPHMHSRSMLRPLELSLPSQTSYSEN-EILKKELETLRTYYDSA 461

Query: 261 PESELK 278
            +  LK
Sbjct: 462 KQDRLK 467

>DMF1_SCHPO (P78953) Division mal foutue 1 protein|
          Length = 920

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 90  ELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPES 269
           ELY+  +++ +P +  +  +S++QE      S TS+PK     +  YG     Y  +P  
Sbjct: 357 ELYLQSSRNSEPEISTIINDSLQQENMDEDISATSIPKS----QAAYGHGSVTYHEVPRY 412

Query: 270 EL 275
            L
Sbjct: 413 NL 414

>YACF_SHIFL (Q83MF4) UPF0289 protein yacF|
          Length = 247

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 123 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 221
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAVSVLISAPRIGQFLR 113

>EEA1_HUMAN (Q15075) Early endosome antigen 1 (Endosome-associated protein|
           p162) (Zinc finger FYVE domain-containing protein 2)
          Length = 1411

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +3

Query: 141 ALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPESELKKYMADILSVLALTM 320
           AL+  +QE+   T+ +  V   L+  + H   L        ES LK+Y    LS+   T 
Sbjct: 675 ALQDKQQELNKITTQLDQVTAKLQDKQEHCSQL--------ESHLKEYKEKYLSLEQKTE 726

Query: 321 SAEGERESL 347
             EG+ + L
Sbjct: 727 ELEGQIKKL 735

>YACF_SALTY (P67693) UPF0289 protein yacF|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 123 PGVQRLALESMRQEIRSATSSMTSVPK 203
           PGV +  +E++RQ+++SA S + S P+
Sbjct: 81  PGVDQDRIEALRQQLKSAGSVLISAPR 107

>YACF_SALTI (P67694) UPF0289 protein yacF|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 123 PGVQRLALESMRQEIRSATSSMTSVPK 203
           PGV +  +E++RQ+++SA S + S P+
Sbjct: 81  PGVDQDRIEALRQQLKSAGSVLISAPR 107

>YACF_SALPA (Q5PDD7) UPF0289 protein yacF|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 123 PGVQRLALESMRQEIRSATSSMTSVPK 203
           PGV +  +E++RQ+++SA S + S P+
Sbjct: 81  PGVDQDRIEALRQQLKSAGSVLISAPR 107

>YACF_ECOLI (P36680) UPF0289 protein yacF|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 123 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 221
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAGSVLISAPRIGQFLR 113

>YACF_ECOL6 (Q8FL56) UPF0289 protein yacF|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 123 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 221
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAGSVLISAPRIGQFLR 113

>YACF_ECO57 (Q8X988) UPF0289 protein yacF|
          Length = 247

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 123 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 221
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAGSVLISAPRIGQFLR 113

>REST_CHICK (O42184) Restin (Cytoplasmic linker protein 170) (CLIP-170)|
          Length = 1433

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/66 (22%), Positives = 31/66 (46%)
 Frame = +3

Query: 132  QRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPESELKKYMADILSVLA 311
            Q+  L++ ++E++     +T + K ++  +  Y  L+  YE      + K+ ADI     
Sbjct: 974  QQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQ 1033

Query: 312  LTMSAE 329
              + AE
Sbjct: 1034 NLLDAE 1039


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,937,584
Number of Sequences: 219361
Number of extensions: 578442
Number of successful extensions: 1951
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1948
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)