ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05h01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AM039905.1| Hordeum vulgare mRNA for methionine synthase 2 enzyme (ms2 gene) Length = 2675 Score = 601 bits (303), Expect = e-169 Identities = 303/303 (100%) Strand = Plus / Plus Query: 16 ctctgcctcccactctatcgtcttcctcctcatctccggcgccactccgccgcccctcga 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 ctctgcctcccactctatcgtcttcctcctcatctccggcgccactccgccgcccctcga 61 Query: 76 ctcctccaaggaccaacgaaagatggcgtcccatattgttgggtaccctcgcatgggccc 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 ctcctccaaggaccaacgaaagatggcgtcccatattgttgggtaccctcgcatgggccc 121 Query: 136 caagagggagctcaagtttgccttggagtctttctgggatgggaagagcagcgctgagga 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 caagagggagctcaagtttgccttggagtctttctgggatgggaagagcagcgctgagga 181 Query: 196 tctggagaaggttgccaccgacctcagggccagcatctggaagcagatgtcagaggctgg 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 tctggagaaggttgccaccgacctcagggccagcatctggaagcagatgtcagaggctgg 241 Query: 256 gatcaagtacattcccagcaacaccttctcatactatgaccaggtgcttgacacaacggc 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 gatcaagtacattcccagcaacaccttctcatactatgaccaggtgcttgacacaacggc 301 Query: 316 cat 318 ||| Sbjct: 302 cat 304
>gb|BT009353.1| Triticum aestivum clone wlm96.pk0018.c10:fis, full insert mRNA sequence Length = 2634 Score = 402 bits (203), Expect = e-109 Identities = 224/231 (96%) Strand = Plus / Plus Query: 88 ccaacgaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagct 147 |||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 65 ccaaggaaagatggcatcccacattgttggataccctcgcatgggccccaagagggagct 124 Query: 148 caagtttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggt 207 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 125 caagtttgccttggagtctttctgggatgggaagagcagcgctgaggatttggagaaggt 184 Query: 208 tgccaccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacat 267 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 185 tgccgccgacctcagggccagcatctggaagcagatgtcagaggctgggattaagtacat 244 Query: 268 tcccagcaacaccttctcatactatgaccaggtgcttgacacaacggccat 318 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 tcccagcaacaccttctcatactatgaccaggtgcttgacacaacggccat 295 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 30 ctatcgtcttcctcctcatctccggcgccactccgc 65 ||||||||||||||| ||||||||||||| |||||| Sbjct: 22 ctatcgtcttcctccccatctccggcgccgctccgc 57
>gb|AY104793.1| Zea mays PCO079166 mRNA sequence Length = 2720 Score = 341 bits (172), Expect = 8e-91 Identities = 223/240 (92%) Strand = Plus / Plus Query: 79 ctccaaggaccaacgaaagatggcgtcccatattgttgggtaccctcgcatgggccccaa 138 ||||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 94 ctccacggtccaaggaaagatggcgtcccatattgttggataccctcgcatgggccccaa 153 Query: 139 gagggagctcaagtttgccttggagtctttctgggatgggaagagcagcgctgaggatct 198 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 154 gagggagctcaagtttgccttggagtctttctgggatgggaagagcagcgccgaggattt 213 Query: 199 ggagaaggttgccaccgacctcagggccagcatctggaagcagatgtcagaggctgggat 258 |||||| |||||||| ||||| ||| | |||||||||||||| |||||||| |||||||| Sbjct: 214 ggagaaagttgccactgacctgaggtctagcatctggaagcaaatgtcagaagctgggat 273 Query: 259 caagtacattcccagcaacaccttctcatactatgaccaggtgcttgacacaacggccat 318 ||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct: 274 caagtacattcccagcaacaccttctcgtactatgaccaggttcttgataccacggccat 333
>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds Length = 100773 Score = 337 bits (170), Expect = 1e-89 Identities = 212/226 (93%) Strand = Plus / Minus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 76633 gaaagatggcgtcccatattgttggataccctcgcatgggccccaagagggagctcaagt 76574 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 ||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| Sbjct: 76573 ttgccttggagtctttctgggatgggaagagcagcgccgaggatttggagaaagttgcca 76514 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 | ||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 76513 ctgacctcaggtctagcatctggaagcaaatgtcagaagctgggatcaagtacattccca 76454 Query: 273 gcaacaccttctcatactatgaccaggtgcttgacacaacggccat 318 ||||||||||||| ||||| |||||||| ||||| || |||||||| Sbjct: 76453 gcaacaccttctcgtactacgaccaggttcttgataccacggccat 76408
>dbj|AK099069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163D13, full insert sequence Length = 2640 Score = 323 bits (163), Expect = 2e-85 Identities = 205/219 (93%) Strand = Plus / Plus Query: 91 acgaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaa 150 ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct: 61 acgaaagatggcgtctcacattgttgggtacccccgcatgggccccaagagggagctcaa 120 Query: 151 gtttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgc 210 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 121 gtttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgc 180 Query: 211 caccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcc 270 ||||||||||||||||||||||||||||| ||| | || ||||||||||||||||| || Sbjct: 181 gaccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtacatccc 240 Query: 271 cagcaacaccttctcatactatgaccaggtgcttgacac 309 ||||||||||||||| |||||||| ||||| |||||||| Sbjct: 241 cagcaacaccttctcgtactatgatcaggttcttgacac 279
>dbj|AK065255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J12, full insert sequence Length = 2668 Score = 323 bits (163), Expect = 2e-85 Identities = 205/219 (93%) Strand = Plus / Plus Query: 91 acgaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaa 150 ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct: 60 acgaaagatggcgtctcacattgttgggtacccccgcatgggccccaagagggagctcaa 119 Query: 151 gtttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgc 210 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 120 gtttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgc 179 Query: 211 caccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcc 270 ||||||||||||||||||||||||||||| ||| | || ||||||||||||||||| || Sbjct: 180 gaccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtacatccc 239 Query: 271 cagcaacaccttctcatactatgaccaggtgcttgacac 309 ||||||||||||||| |||||||| ||||| |||||||| Sbjct: 240 cagcaacaccttctcgtactatgatcaggttcttgacac 278
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 319 bits (161), Expect = 3e-84 Identities = 203/217 (93%) Strand = Plus / Plus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 26680241 gaaagatggcgtctcacattgttgggtacccccgcatgggccccaagagggagctcaagt 26680300 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct: 26680301 ttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgcga 26680360 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 |||||||||||||||||||||||||||| ||| | || ||||||||||||||||| |||| Sbjct: 26680361 ccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtacatcccca 26680420 Query: 273 gcaacaccttctcatactatgaccaggtgcttgacac 309 ||||||||||||| |||||||| ||||| |||||||| Sbjct: 26680421 gcaacaccttctcgtactatgatcaggttcttgacac 26680457 Score = 305 bits (154), Expect = 5e-80 Identities = 208/226 (92%) Strand = Plus / Plus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 ||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 26692025 gaaagatggcgtctcacattgttggatacccccgcatgggccccaagagggagctcaagt 26692084 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct: 26692085 ttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgcga 26692144 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 |||||||||||||||||||||||||||| ||| | || |||||||||||||| || |||| Sbjct: 26692145 ccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtatatcccca 26692204 Query: 273 gcaacaccttctcatactatgaccaggtgcttgacacaacggccat 318 ||||||||||||| |||||||| ||||| |||||||| || ||||| Sbjct: 26692205 gcaacaccttctcgtactatgatcaggttcttgacacgaccgccat 26692250 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 ctccgccgcccctcgactcctcca 83 |||||||||| ||||||||||||| Sbjct: 25616833 ctccgccgcctctcgactcctcca 25616856
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 319 bits (161), Expect = 3e-84 Identities = 203/217 (93%) Strand = Plus / Plus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 26608410 gaaagatggcgtctcacattgttgggtacccccgcatgggccccaagagggagctcaagt 26608469 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct: 26608470 ttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgcga 26608529 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 |||||||||||||||||||||||||||| ||| | || ||||||||||||||||| |||| Sbjct: 26608530 ccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtacatcccca 26608589 Query: 273 gcaacaccttctcatactatgaccaggtgcttgacac 309 ||||||||||||| |||||||| ||||| |||||||| Sbjct: 26608590 gcaacaccttctcgtactatgatcaggttcttgacac 26608626 Score = 305 bits (154), Expect = 5e-80 Identities = 208/226 (92%) Strand = Plus / Plus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 ||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 26620194 gaaagatggcgtctcacattgttggatacccccgcatgggccccaagagggagctcaagt 26620253 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct: 26620254 ttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgcga 26620313 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 |||||||||||||||||||||||||||| ||| | || |||||||||||||| || |||| Sbjct: 26620314 ccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtatatcccca 26620373 Query: 273 gcaacaccttctcatactatgaccaggtgcttgacacaacggccat 318 ||||||||||||| |||||||| ||||| |||||||| || ||||| Sbjct: 26620374 gcaacaccttctcgtactatgatcaggttcttgacacgaccgccat 26620419 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 ctccgccgcccctcgactcctcca 83 |||||||||| ||||||||||||| Sbjct: 25545009 ctccgccgcctctcgactcctcca 25545032
>emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 101173 Score = 319 bits (161), Expect = 3e-84 Identities = 203/217 (93%) Strand = Plus / Plus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 99111 gaaagatggcgtctcacattgttgggtacccccgcatgggccccaagagggagctcaagt 99170 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct: 99171 ttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgcga 99230 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 |||||||||||||||||||||||||||| ||| | || ||||||||||||||||| |||| Sbjct: 99231 ccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtacatcccca 99290 Query: 273 gcaacaccttctcatactatgaccaggtgcttgacac 309 ||||||||||||| |||||||| ||||| |||||||| Sbjct: 99291 gcaacaccttctcgtactatgatcaggttcttgacac 99327
>gb|AY109415.1| Zea mays CL598_2 mRNA sequence Length = 3017 Score = 313 bits (158), Expect = 2e-82 Identities = 209/226 (92%) Strand = Plus / Minus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 2935 gaaagatggcgtcccacattgttggataccctcgcatgggccccaagagggagctcaagt 2876 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 |||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct: 2875 ttgcacttgagtctttctgggatgggaagagcaccgctgaggatctggagaaggttgcta 2816 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 |||||||||||||||| ||||||||||||||| | || ||||||||||||||||| |||| Sbjct: 2815 ccgacctcagggccagtatctggaagcagatggctgatgctgggatcaagtacatcccca 2756 Query: 273 gcaacaccttctcatactatgaccaggtgcttgacacaacggccat 318 ||||||| ||||| |||||||||||||| |||||||| || ||||| Sbjct: 2755 gcaacactttctcgtactatgaccaggtccttgacaccactgccat 2710
>dbj|AK067757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H17, full insert sequence Length = 2627 Score = 309 bits (156), Expect = 3e-81 Identities = 210/228 (92%) Strand = Plus / Plus Query: 91 acgaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaa 150 ||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 61 acgaaagatggcgtctcacattgttggatacccccgcatgggccccaagagggagctcaa 120 Query: 151 gtttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgc 210 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 121 gtttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgc 180 Query: 211 caccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcc 270 ||||||||||||||||||||||||||||| ||| | || |||||||||||||| || || Sbjct: 181 gaccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtatatccc 240 Query: 271 cagcaacaccttctcatactatgaccaggtgcttgacacaacggccat 318 ||||||||||||||| |||||||| ||||| |||||||| || ||||| Sbjct: 241 cagcaacaccttctcgtactatgatcaggttcttgacacgaccgccat 288
>dbj|AK067726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O11, full insert sequence Length = 2783 Score = 305 bits (154), Expect = 5e-80 Identities = 208/226 (92%) Strand = Plus / Plus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 ||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 182 gaaagatggcgtctcacattgttggatacccccgcatgggccccaagagggagctcaagt 241 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct: 242 ttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgcga 301 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 |||||||||||||||||||||||||||| ||| | || |||||||||||||| || |||| Sbjct: 302 ccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtatatcccca 361 Query: 273 gcaacaccttctcatactatgaccaggtgcttgacacaacggccat 318 ||||||||||||| |||||||| ||||| |||||||| || ||||| Sbjct: 362 gcaacaccttctcgtactatgatcaggttcttgacacgaccgccat 407
>emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 83015 Score = 305 bits (154), Expect = 5e-80 Identities = 208/226 (92%) Strand = Plus / Minus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 ||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 79102 gaaagatggcgtctcacattgttggatacccccgcatgggccccaagagggagctcaagt 79043 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct: 79042 ttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgcga 78983 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 |||||||||||||||||||||||||||| ||| | || |||||||||||||| || |||| Sbjct: 78982 ccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtatatcccca 78923 Query: 273 gcaacaccttctcatactatgaccaggtgcttgacacaacggccat 318 ||||||||||||| |||||||| ||||| |||||||| || ||||| Sbjct: 78922 gcaacaccttctcgtactatgatcaggttcttgacacgaccgccat 78877
>gb|AF439723.1|AF439723 Zea mays methionine synthase mRNA, partial cds Length = 2300 Score = 287 bits (145), Expect = 1e-74 Identities = 202/221 (91%) Strand = Plus / Plus Query: 98 atggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgcc 157 |||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1 atggcgtcacacatcgttggataccctcgcatgggccccaagagggagctcaagtttgca 60 Query: 158 ttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgccaccgac 217 | ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 61 ctcgagtctttctgggatgggaagagcaccgctgaggatctggagaaggttgctaccgac 120 Query: 218 ctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcccagcaac 277 ||||||||||| ||||||||||||||| | || ||||||||||||||||| ||||||||| Sbjct: 121 ctcagggccagtatctggaagcagatggctgatgctgggatcaagtacatccccagcaac 180 Query: 278 accttctcatactatgaccaggtgcttgacacaacggccat 318 || ||||| |||||||||||||| |||||||| || ||||| Sbjct: 181 actttctcgtactatgaccaggtccttgacaccactgccat 221
>dbj|AB164396.1| Hordeum vulgare HvMS mRNA for methionine synthase, complete cds Length = 2558 Score = 274 bits (138), Expect = 2e-70 Identities = 204/226 (90%) Strand = Plus / Plus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 |||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 4 gaaagatggcgtcccacattgtcggatacccgcgcatgggccccaagagggagctcaagt 63 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 ||||| | ||||||||||||||||| ||||||||||| |||||| ||||||||||||||| Sbjct: 64 ttgcccttgagtctttctgggatggcaagagcagcgccgaggatttggagaaggttgcca 123 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 ||||||||||||| |||||||||||||||||| | | ||||||||||||||||| |||| Sbjct: 124 ccgacctcagggcaagcatctggaagcagatggctggtgctgggatcaagtacatcccca 183 Query: 273 gcaacaccttctcatactatgaccaggtgcttgacacaacggccat 318 ||||||||||| | ||||| || ||||| |||||||| || ||||| Sbjct: 184 gcaacaccttcgcttactacgatcaggttcttgacaccaccgccat 229
>emb|AM039904.1| Hordeum vulgare mRNA for methionine synthase 1 enzyme (ms1 gene) Length = 2642 Score = 274 bits (138), Expect = 2e-70 Identities = 204/226 (90%) Strand = Plus / Plus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 |||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 49 gaaagatggcgtcccacattgtcggatacccgcgcatgggccccaagagggagctcaagt 108 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 ||||| | ||||||||||||||||| ||||||||||| |||||| ||||||||||||||| Sbjct: 109 ttgccctcgagtctttctgggatggcaagagcagcgccgaggatttggagaaggttgcca 168 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 ||||||||||||| |||||||||||||||||| | | ||||||||||||||||| |||| Sbjct: 169 ccgacctcagggcaagcatctggaagcagatggctggtgctgggatcaagtacatcccca 228 Query: 273 gcaacaccttctcatactatgaccaggtgcttgacacaacggccat 318 ||||||||||| | ||||| || ||||| |||||||| || ||||| Sbjct: 229 gcaacaccttcgcttactacgatcaggttcttgacaccaccgccat 274
>gb|U84889.1|MCU84889 Mesembryanthemum crystallinum methionine synthase (MetE) mRNA, complete cds Length = 2734 Score = 155 bits (78), Expect = 1e-34 Identities = 186/222 (83%) Strand = Plus / Plus Query: 97 gatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgc 156 ||||||||| || |||||||| ||||| ||||||||||| ||||| |||||||||||||| Sbjct: 120 gatggcgtctcacattgttggatacccccgcatgggcccaaagagagagctcaagtttgc 179 Query: 157 cttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgccaccga 216 | ||||||||||||||||| ||||||| || |||||| || ||||||| | | || Sbjct: 180 tcttgagtctttctgggatggcaagagcactgccgaggatttgaagaaggtgtcagctga 239 Query: 217 cctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcccagcaa 276 |||||| | |||||||||||||||| | || ||||| |||||||||||||||||||| Sbjct: 240 tctcaggtcatccatctggaagcagatggctgatgctggtatcaagtacattcccagcaa 299 Query: 277 caccttctcatactatgaccaggtgcttgacacaacggccat 318 ||| ||||| ||||| |||||||| || ||||| || ||||| Sbjct: 300 cactttctcttactacgaccaggtcctcgacaccaccgccat 341
>emb|X83499.1|CRMETS C.roseus MetE mRNA for methionine synthase Length = 2602 Score = 147 bits (74), Expect = 2e-32 Identities = 170/202 (84%) Strand = Plus / Plus Query: 93 gaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagt 152 |||| ||||| ||||| |||||||| |||||||| |||||||| ||||| || || || | Sbjct: 46 gaaaaatggcttcccacattgttggttaccctcgtatgggcccaaagagagaacttaaat 105 Query: 153 ttgccttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgcca 212 |||| ||||| |||||||||||| |||||| ||||||||| || ||||||| || Sbjct: 106 ttgcattggaatctttctgggataaaaagagctctgctgaggatttgcagaaggtggctg 165 Query: 213 ccgacctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattccca 272 | ||||||||| || |||||||||||||||| | || ||||| |||||||||||||||| Sbjct: 166 ctgacctcaggtcctccatctggaagcagatggccgatgctggcatcaagtacattccca 225 Query: 273 gcaacaccttctcatactatga 294 ||||||||||||| |||||||| Sbjct: 226 gcaacaccttctcttactatga 247
>gb|AF518566.1| Glycine max methionine synthase mRNA, complete cds Length = 2695 Score = 143 bits (72), Expect = 4e-31 Identities = 159/188 (84%) Strand = Plus / Plus Query: 113 gttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttctgg 172 ||||| ||||| || ||||| |||||||| ||||||||||| || | |||||||||||| Sbjct: 90 gttggatacccccgtatgggtcccaagagagagctcaagttcgctctcgagtctttctgg 149 Query: 173 gatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagcatc 232 ||||| ||||||||||| |||||| || ||||||| | | || |||||||| |||| Sbjct: 150 gatggcaagagcagcgccgaggatttgcagaaggtgtcttctgatctcagggcatccatc 209 Query: 233 tggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatactat 292 |||||||||||| | || ||||||||||||||||| ||||||||||| ||||| ||||| Sbjct: 210 tggaagcagatggctgatgctgggatcaagtacatccccagcaacactttctctcactat 269 Query: 293 gaccaggt 300 |||||||| Sbjct: 270 gaccaggt 277
>gb|AF082893.1| Solanum tuberosum methionine synthase (MS) mRNA, complete cds Length = 2644 Score = 131 bits (66), Expect = 1e-27 Identities = 168/202 (83%) Strand = Plus / Plus Query: 111 ttgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttct 170 ||||||| || || || |||||||| ||||| ||||| || || || | |||||||||| Sbjct: 70 ttgttggatatccccgtatgggcccaaagagagagctgaaattcgctctcgagtctttct 129 Query: 171 gggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagca 230 ||||||| |||||||| ||||||||| || ||||||| | | ||||||||| | || Sbjct: 130 gggatggaaagagcagtgctgaggatttgaagaaggtctctgcagacctcaggtcatcca 189 Query: 231 tctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatact 290 ||||||| |||||||| || ||||| || |||||||||||||||||||| ||||| |||| Sbjct: 190 tctggaaacagatgtctgatgctggcattaagtacattcccagcaacacattctcttact 249 Query: 291 atgaccaggtgcttgacacaac 312 |||| |||||||| |||||||| Sbjct: 250 atgatcaggtgctcgacacaac 271
>emb|Z49150.1|CBKPMETGN C.blumei kinetoplast met gene for cobalamine-independent methionine synthase Length = 2795 Score = 115 bits (58), Expect = 9e-23 Identities = 73/78 (93%) Strand = Plus / Plus Query: 235 gaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatactatga 294 |||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 316 gaagcagatgtctgatgctggaatcaagtacattcccagcaacacattctcatactatga 375 Query: 295 ccaggtgcttgacacaac 312 ||||||||||||||||| Sbjct: 376 tcaggtgcttgacacaac 393 Score = 91.7 bits (46), Expect = 1e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 88 ccaacgaaagatggcgtcccatattgttgggtaccctcgcatgggccccaagagggagct 147 |||| |||| ||||| ||||| || ||||| ||||| || |||||||| ||||| ||||| Sbjct: 172 ccaaggaaaaatggcttcccacatcgttggatacccccgtatgggccctaagagagagct 231 Query: 148 caagtttgccttggagtctttctgggatgggaagagcagcgctgaggatctgga 201 |||||||| |||| |||||||||||||| ||||||||||| |||||| |||| Sbjct: 232 gaagtttgctctggaatctttctgggatggcaagagcagcgccgaggatttgga 285
>ref|NM_111249.3| Arabidopsis thaliana 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase AT3G03780 transcript variant AT3G03780.1 mRNA, complete cds Length = 2615 Score = 113 bits (57), Expect = 3e-22 Identities = 180/221 (81%) Strand = Plus / Plus Query: 98 atggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgcc 157 ||||| ||||| |||||||| || || || ||||| || ||||| |||||||||||||| Sbjct: 80 atggcttcccacattgttggatatccacgtatgggacctaagagagagctcaagtttgca 139 Query: 158 ttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgccaccgac 217 |||||||||||||||||||| |||||||| || || ||| || ||||||| | | || Sbjct: 140 ttggagtctttctgggatggcaagagcagtgccgatgatttgcagaaggtgtctgctgat 199 Query: 218 ctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcccagcaac 277 |||||| | |||||||| |||||||| | |||||||| ||||| || || |||||| Sbjct: 200 ctcaggtctgatatctggaaacagatgtctgctgctgggattaagtatatcccaagcaac 259 Query: 278 accttctcatactatgaccaggtgcttgacacaacggccat 318 ||||| || | |||||||||||||||||||| || ||||| Sbjct: 260 accttttctcattatgaccaggtgcttgacaccaccgccat 300
>ref|NM_180176.1| Arabidopsis thaliana 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase AT3G03780 transcript variant AT3G03780.2 mRNA, complete cds Length = 2608 Score = 113 bits (57), Expect = 3e-22 Identities = 180/221 (81%) Strand = Plus / Plus Query: 98 atggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgcc 157 ||||| ||||| |||||||| || || || ||||| || ||||| |||||||||||||| Sbjct: 73 atggcttcccacattgttggatatccacgtatgggacctaagagagagctcaagtttgca 132 Query: 158 ttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgccaccgac 217 |||||||||||||||||||| |||||||| || || ||| || ||||||| | | || Sbjct: 133 ttggagtctttctgggatggcaagagcagtgccgatgatttgcagaaggtgtctgctgat 192 Query: 218 ctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcccagcaac 277 |||||| | |||||||| |||||||| | |||||||| ||||| || || |||||| Sbjct: 193 ctcaggtctgatatctggaaacagatgtctgctgctgggattaagtatatcccaagcaac 252 Query: 278 accttctcatactatgaccaggtgcttgacacaacggccat 318 ||||| || | |||||||||||||||||||| || ||||| Sbjct: 253 accttttctcattatgaccaggtgcttgacaccaccgccat 293
>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence, complete sequence Length = 101410 Score = 113 bits (57), Expect = 3e-22 Identities = 180/221 (81%) Strand = Plus / Minus Query: 98 atggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgcc 157 ||||| ||||| |||||||| || || || ||||| || ||||| |||||||||||||| Sbjct: 59429 atggcttcccacattgttggatatccacgtatgggacctaagagagagctcaagtttgca 59370 Query: 158 ttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgccaccgac 217 |||||||||||||||||||| |||||||| || || ||| || ||||||| | | || Sbjct: 59369 ttggagtctttctgggatggcaagagcagtgccgatgatttgcagaaggtgtctgctgat 59310 Query: 218 ctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcccagcaac 277 |||||| | |||||||| |||||||| | |||||||| ||||| || || |||||| Sbjct: 59309 ctcaggtctgatatctggaaacagatgtctgctgctgggattaagtatatcccaagcaac 59250 Query: 278 accttctcatactatgaccaggtgcttgacacaacggccat 318 ||||| || | |||||||||||||||||||| || ||||| Sbjct: 59249 accttttctcattatgaccaggtgcttgacaccaccgccat 59209
>gb|AY150385.1| Arabidopsis thaliana putative methionine synthase (At3g03780) mRNA, complete cds Length = 2329 Score = 113 bits (57), Expect = 3e-22 Identities = 180/221 (81%) Strand = Plus / Plus Query: 98 atggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgcc 157 ||||| ||||| |||||||| || || || ||||| || ||||| |||||||||||||| Sbjct: 1 atggcttcccacattgttggatatccacgtatgggacctaagagagagctcaagtttgca 60 Query: 158 ttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgccaccgac 217 |||||||||||||||||||| |||||||| || || ||| || ||||||| | | || Sbjct: 61 ttggagtctttctgggatggcaagagcagtgccgatgatttgcagaaggtgtctgctgat 120 Query: 218 ctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcccagcaac 277 |||||| | |||||||| |||||||| | |||||||| ||||| || || |||||| Sbjct: 121 ctcaggtctgatatctggaaacagatgtctgctgctgggattaagtatatcccaagcaac 180 Query: 278 accttctcatactatgaccaggtgcttgacacaacggccat 318 ||||| || | |||||||||||||||||||| || ||||| Sbjct: 181 accttttctcattatgaccaggtgcttgacaccaccgccat 221
>gb|AY040010.1| Arabidopsis thaliana putative methionine synthase (At3g03780) mRNA, complete cds Length = 2599 Score = 113 bits (57), Expect = 3e-22 Identities = 180/221 (81%) Strand = Plus / Plus Query: 98 atggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgcc 157 ||||| ||||| |||||||| || || || ||||| || ||||| |||||||||||||| Sbjct: 73 atggcttcccacattgttggatatccacgtatgggacctaagagagagctcaagtttgca 132 Query: 158 ttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgccaccgac 217 |||||||||||||||||||| |||||||| || || ||| || ||||||| | | || Sbjct: 133 ttggagtctttctgggatggcaagagcagtgccgatgatttgcagaaggtgtctgctgat 192 Query: 218 ctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcccagcaac 277 |||||| | |||||||| |||||||| | |||||||| ||||| || || |||||| Sbjct: 193 ctcaggtctgatatctggaaacagatgtctgctgctgggattaagtatatcccaagcaac 252 Query: 278 accttctcatactatgaccaggtgcttgacacaacggccat 318 ||||| || | |||||||||||||||||||| || ||||| Sbjct: 253 accttttctcattatgaccaggtgcttgacaccaccgccat 293
>emb|AJ608674.1| Arabidopsis thaliana mRNA for cobalamin-independent methionine synthase (atms2 gene) Length = 2328 Score = 113 bits (57), Expect = 3e-22 Identities = 180/221 (81%) Strand = Plus / Plus Query: 98 atggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgcc 157 ||||| ||||| |||||||| || || || ||||| || ||||| |||||||||||||| Sbjct: 6 atggcttcccacattgttggatatccacgtatgggacctaagagagagctcaagtttgca 65 Query: 158 ttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgccaccgac 217 |||||||||||||||||||| |||||||| || || ||| || ||||||| | | || Sbjct: 66 ttggagtctttctgggatggcaagagcagtgccgatgatttgcagaaggtgtctgctgat 125 Query: 218 ctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcccagcaac 277 |||||| | |||||||| |||||||| | |||||||| ||||| || || |||||| Sbjct: 126 ctcaggtctgatatctggaaacagatgtctgctgctgggattaagtatatcccaagcaac 185 Query: 278 accttctcatactatgaccaggtgcttgacacaacggccat 318 ||||| || | |||||||||||||||||||| || ||||| Sbjct: 186 accttttctcattatgaccaggtgcttgacaccaccgccat 226
>gb|AY084559.1| Arabidopsis thaliana clone 111720 mRNA, complete sequence Length = 2611 Score = 113 bits (57), Expect = 3e-22 Identities = 180/221 (81%) Strand = Plus / Plus Query: 98 atggcgtcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgcc 157 ||||| ||||| |||||||| || || || ||||| || ||||| |||||||||||||| Sbjct: 80 atggcttcccacattgttggatatccacgtatgggacctaagagagagctcaagtttgca 139 Query: 158 ttggagtctttctgggatgggaagagcagcgctgaggatctggagaaggttgccaccgac 217 |||||||||||||||||||| |||||||| || || ||| || ||||||| | | || Sbjct: 140 ttggagtctttctgggatggcaagagcagtgccgatgatttgcagaaggtgtctgctgat 199 Query: 218 ctcagggccagcatctggaagcagatgtcagaggctgggatcaagtacattcccagcaac 277 |||||| | |||||||| |||||||| | |||||||| ||||| || || |||||| Sbjct: 200 ctcaggtctgatatctggaaacagatgtctgctgctgggattaagtatatcccaagcaac 259 Query: 278 accttctcatactatgaccaggtgcttgacacaacggccat 318 ||||| || | |||||||||||||||||||| || ||||| Sbjct: 260 accttttctcattatgaccaggtgcttgacaccaccgccat 300
>gb|BT012107.1| Arabidopsis thaliana At3g03780 mRNA sequence Length = 1519 Score = 109 bits (55), Expect = 5e-21 Identities = 175/215 (81%) Strand = Plus / Plus Query: 104 tcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggag 163 ||||| |||||||| || || || ||||| || ||||| |||||||||||||| |||||| Sbjct: 4 tcccacattgttggatatccacgtatgggacctaagagagagctcaagtttgcattggag 63 Query: 164 tctttctgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagg 223 |||||||||||||| |||||||| || || ||| || ||||||| | | || |||||| Sbjct: 64 tctttctgggatggcaagagcagtgccgatgatttgcagaaggtgtctgctgatctcagg 123 Query: 224 gccagcatctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttc 283 | |||||||| |||||||| | |||||||| ||||| || || ||||||||||| Sbjct: 124 tctgatatctggaaacagatgtctgctgctgggattaagtatatcccaagcaacaccttt 183 Query: 284 tcatactatgaccaggtgcttgacacaacggccat 318 || | |||||||||||||||||||| || ||||| Sbjct: 184 tctcattatgaccaggtgcttgacaccaccgccat 218
>ref|NM_121798.2| Arabidopsis thaliana ATCIMS (COBALAMIN-INDEPENDENT METHIONINE SYNTHASE); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase AT5G17920 (ATCIMS) mRNA, complete cds Length = 2682 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 105 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 164 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 165 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 224 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 225 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 284 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 285 tacgaccaggttcttgacaccaccgccat 313
>gb|BT012108.1| Arabidopsis thaliana At5g17920 mRNA sequence Length = 2295 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 10 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 69 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 70 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 129 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 130 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 189 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 190 tacgaccaggttcttgacaccaccgccat 218
>gb|BT000691.1| Arabidopsis thaliana clone RAFL08-16-E05 (R11047) putative 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (At5g17920) mRNA, complete cds Length = 2585 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 98 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 157 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 158 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 217 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 218 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 277 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 278 tacgaccaggttcttgacaccaccgccat 306
>gb|AY091692.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2298 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 13 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 72 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 73 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 132 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 133 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 192 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 193 tacgaccaggttcttgacaccaccgccat 221
>gb|AY070771.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2648 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 95 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 154 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 155 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 214 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 215 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 274 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 275 tacgaccaggttcttgacaccaccgccat 303
>gb|AY069876.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2594 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 95 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 154 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 155 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 214 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 215 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 274 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 275 tacgaccaggttcttgacaccaccgccat 303
>emb|AJ608673.1| Arabidopsis thaliana mRNA for cobalamin-independent methionine synthase (atms1 gene) Length = 2326 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 18 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 77 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 78 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 137 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 138 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 197 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 198 tacgaccaggttcttgacaccaccgccat 226
>gb|AY057499.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2613 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 95 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 154 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 155 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 214 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 215 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 274 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 275 tacgaccaggttcttgacaccaccgccat 303
>gb|AY057478.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2608 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 95 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 154 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 155 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 214 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 215 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 274 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 275 tacgaccaggttcttgacaccaccgccat 303
>gb|AY056098.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2460 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 95 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 154 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 155 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 214 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 215 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 274 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 275 tacgaccaggttcttgacaccaccgccat 303
>gb|AY048201.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2549 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 95 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 154 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 155 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 214 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 215 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 274 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 275 tacgaccaggttcttgacaccaccgccat 303
>gb|AF370522.1|AF370522 Arabidopsis thaliana cobalamin-independent methionine synthase (MPI7.9) mRNA, complete cds Length = 2646 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 95 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 154 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 155 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 214 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 215 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 274 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 275 tacgaccaggttcttgacaccaccgccat 303
>dbj|AB011480.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPI7 Length = 40548 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 36332 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 36391 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 36392 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 36451 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 36452 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 36511 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 36512 tacgaccaggttcttgacaccaccgccat 36540
>gb|U97200.1|ATU97200 Arabidopsis thaliana cobalamin-independent methionine synthase (ATCIMS) mRNA, complete cds Length = 2595 Score = 105 bits (53), Expect = 9e-20 Identities = 170/209 (81%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||||| Sbjct: 21 attgttggatacccacgtatgggccctaagagagagctcaagtttgcattggaatctttc 80 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 |||||||| ||||||| ||||||||||| ||||||| | | || |||||| | | Sbjct: 81 tgggatggtaagagcactgctgaggatcttcagaaggtgtctgctgatctcaggtcatcc 140 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcatac 289 |||||||| |||||||| | ||||||| |||| ||| || ||||||||||| | || Sbjct: 141 atctggaaacagatgtctgccgctgggactaagttcatccctagcaacacctttgctcac 200 Query: 290 tatgaccaggtgcttgacacaacggccat 318 || |||||||| |||||||| || ||||| Sbjct: 201 tacgaccaggttcttgacaccaccgccat 229
>gb|BC034830.1| Mus musculus cDNA clone MGC:28753 IMAGE:4483004, complete cds Length = 2755 Score = 89.7 bits (45), Expect = 5e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 229 catctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcata 288 |||||||||||||||||| || ||||| |||||||||||||||||||||||||| | || Sbjct: 194 catctggaagcagatgtctgatgctggtatcaagtacattcccagcaacacctttgctta 253 Query: 289 ctatgaccaggtgcttgacac 309 ||| || ||||| |||||||| Sbjct: 254 ctacgatcaggttcttgacac 274 Score = 54.0 bits (27), Expect = 3e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| || || || ||||| || ||||| |||||||||||||| | || |||||| Sbjct: 75 attgttggatatccccgtatgggaccaaagagagagctcaagtttgctcttgaatctttc 134 Query: 170 tgggatgggaagagcagcgctga 192 |||||||| || ||||| ||||| Sbjct: 135 tgggatggtaaaagcagtgctga 157
>gb|BC032196.1| Mus musculus cDNA clone MGC:38244 IMAGE:5324059, complete cds Length = 2766 Score = 89.7 bits (45), Expect = 5e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 229 catctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcata 288 |||||||||||||||||| || ||||| |||||||||||||||||||||||||| | || Sbjct: 205 catctggaagcagatgtctgatgctggtatcaagtacattcccagcaacacctttgctta 264 Query: 289 ctatgaccaggtgcttgacac 309 ||| || ||||| |||||||| Sbjct: 265 ctacgatcaggttcttgacac 285 Score = 54.0 bits (27), Expect = 3e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| || || || ||||| || ||||| |||||||||||||| | || |||||| Sbjct: 86 attgttggatatccccgtatgggaccaaagagagagctcaagtttgctcttgaatctttc 145 Query: 170 tgggatgggaagagcagcgctga 192 |||||||| || ||||| ||||| Sbjct: 146 tgggatggtaaaagcagtgctga 168
>dbj|AB221011.1| Beta vulgaris BvMS1 mRNA for methionine synthase, complete cds Length = 2720 Score = 89.7 bits (45), Expect = 5e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 229 catctggaagcagatgtcagaggctgggatcaagtacattcccagcaacaccttctcata 288 |||||||||||||||||| || ||||| |||||||||||||||||||||||||| | || Sbjct: 224 catctggaagcagatgtctgatgctggtatcaagtacattcccagcaacacctttgctta 283 Query: 289 ctatgaccaggtgcttgacac 309 ||| || ||||| |||||||| Sbjct: 284 ctacgatcaggttcttgacac 304 Score = 54.0 bits (27), Expect = 3e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| || || || ||||| || ||||| |||||||||||||| | || |||||| Sbjct: 105 attgttggatatccccgtatgggaccaaagagagagctcaagtttgctcttgaatctttc 164 Query: 170 tgggatgggaagagcagcgctga 192 |||||||| || ||||| ||||| Sbjct: 165 tgggatggtaaaagcagtgctga 187
>emb|BX825589.1|CNS0A4R8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL46ZE05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2560 Score = 85.7 bits (43), Expect = 8e-14 Identities = 149/183 (81%), Gaps = 1/183 (0%) Strand = Plus / Plus Query: 137 aagagggagctcaagtttgccttggagtctttctgggatgggaagagcagcgctgaggat 196 ||||| |||||||||||||| |||||||||||||||||||| |||||||| || || ||| Sbjct: 101 aagagagagctcaagtttgcattggagtctttctgggatggcaagagcagtgccgatgat 160 Query: 197 ctggagaaggttgccaccgacctcagggccagcatctggaagcagatgtcagaggctggg 256 || ||||||| | | || |||||| | |||||||| |||||||| | |||||| Sbjct: 161 ttgcagaaggtgtctgctgatctcaggtctgatatctggaaacagatgtctgctgctggg 220 Query: 257 atcaagtacattcccagcaacaccttctcatactatgaccag-gtgcttgacacaacggc 315 || ||||| || || ||||||||||| || | ||||||||| ||||||||||| || || Sbjct: 221 attaagtatatcccaagcaacaccttttctcattatgaccagtgtgcttgacaccaccgc 280 Query: 316 cat 318 ||| Sbjct: 281 cat 283
>emb|AJ608675.1| Arabidopsis thaliana mRNA for cobalamin-independent methionine synthase (atms3 gene) Length = 2464 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 104 tcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggag 163 ||||| || |||||||| ||||| || || || ||||| ||||| |||||||| |||||| Sbjct: 152 tcccacatcgttgggtatcctcgtattggaccgaagagagagcttaagtttgcattggag 211 Query: 164 tctttctgggatgggaagagca 185 || |||||||||||||| |||| Sbjct: 212 tccttctgggatgggaaaagca 233 Score = 40.1 bits (20), Expect = 4.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 251 gctgggatcaagtacattcccagcaacaccttctcatactatga 294 ||||| ||||| || ||||||||||| || || ||||||||||| Sbjct: 299 gctggaatcaaatatattcccagcaatactttttcatactatga 342
>ref|NM_122107.2| Arabidopsis thaliana 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase AT5G20980 mRNA, complete cds Length = 2728 Score = 65.9 bits (33), Expect = 7e-08 Identities = 66/77 (85%) Strand = Plus / Plus Query: 104 tcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggag 163 ||||| || |||||||| ||||| || || || ||||| ||||| |||||||| |||||| Sbjct: 157 tcccacatcgttgggtatcctcgtattggaccgaagagagagcttaagtttgcattggag 216 Query: 164 tctttctgggatgggaa 180 || |||||||||||||| Sbjct: 217 tccttctgggatgggaa 233 Score = 40.1 bits (20), Expect = 4.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 251 gctgggatcaagtacattcccagcaacaccttctcatactatga 294 ||||| ||||| || ||||||||||| || || ||||||||||| Sbjct: 304 gctggaatcaaatatattcccagcaatactttttcatactatga 347
>gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1 Length = 96102 Score = 65.9 bits (33), Expect = 7e-08 Identities = 66/77 (85%) Strand = Plus / Minus Query: 104 tcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggag 163 ||||| || |||||||| ||||| || || || ||||| ||||| |||||||| |||||| Sbjct: 71626 tcccacatcgttgggtatcctcgtattggaccgaagagagagcttaagtttgcattggag 71567 Query: 164 tctttctgggatgggaa 180 || |||||||||||||| Sbjct: 71566 tccttctgggatgggaa 71550 Score = 40.1 bits (20), Expect = 4.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 251 gctgggatcaagtacattcccagcaacaccttctcatactatga 294 ||||| ||||| || ||||||||||| || || ||||||||||| Sbjct: 71479 gctggaatcaaatatattcccagcaatactttttcatactatga 71436
>gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis thaliana Clone T10F18 From Chromosome V, complete sequence Length = 84413 Score = 65.9 bits (33), Expect = 7e-08 Identities = 66/77 (85%) Strand = Plus / Plus Query: 104 tcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggag 163 ||||| || |||||||| ||||| || || || ||||| ||||| |||||||| |||||| Sbjct: 82088 tcccacatcgttgggtatcctcgtattggaccgaagagagagcttaagtttgcattggag 82147 Query: 164 tctttctgggatgggaa 180 || |||||||||||||| Sbjct: 82148 tccttctgggatgggaa 82164 Score = 40.1 bits (20), Expect = 4.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 251 gctgggatcaagtacattcccagcaacaccttctcatactatga 294 ||||| ||||| || ||||||||||| || || ||||||||||| Sbjct: 82235 gctggaatcaaatatattcccagcaatactttttcatactatga 82278
>emb|AJ236870.1|ATH236870 Arabidopsis thaliana cnx1 gene, exons 1-13 Length = 8394 Score = 65.9 bits (33), Expect = 7e-08 Identities = 66/77 (85%) Strand = Plus / Plus Query: 104 tcccatattgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggag 163 ||||| || |||||||| ||||| || || || ||||| ||||| |||||||| |||||| Sbjct: 8175 tcccacatcgttgggtatcctcgtattggaccgaagagagagcttaagtttgcattggag 8234 Query: 164 tctttctgggatgggaa 180 || |||||||||||||| Sbjct: 8235 tccttctgggatgggaa 8251 Score = 40.1 bits (20), Expect = 4.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 251 gctgggatcaagtacattcccagcaacaccttctcatactatga 294 ||||| ||||| || ||||||||||| || || ||||||||||| Sbjct: 8322 gctggaatcaaatatattcccagcaatactttttcatactatga 8365
>gb|AC126009.22| Medicago truncatula clone mth2-15c20, complete sequence Length = 118705 Score = 60.0 bits (30), Expect = 5e-06 Identities = 135/170 (79%) Strand = Plus / Minus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| |||||||| ||||| |||||||| ||| | || ||||| ||||| || ||| Sbjct: 74138 attgttggataccctcgtatgggacccaagagagagttgaaatttgctttggaatcattc 74079 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 ||||| |||||||| || |||||| || |||||||| | | || || || || | Sbjct: 74078 tgggacaaaaagagcagtgccgaggatttgaagaaggtttctgctgatctaagagcatcc 74019 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacac 279 |||||||| |||||||| || | |||||||||||| || || |||||||| Sbjct: 74018 atctggaaacagatgtctgatgttgggatcaagtatatcccaagcaacac 73969
>gb|AC137822.30| Medicago truncatula clone mth2-31e20, complete sequence Length = 140561 Score = 60.0 bits (30), Expect = 5e-06 Identities = 135/170 (79%) Strand = Plus / Minus Query: 110 attgttgggtaccctcgcatgggccccaagagggagctcaagtttgccttggagtctttc 169 |||||||| |||||||| ||||| |||||||| ||| | || ||||| ||||| || ||| Sbjct: 58668 attgttggataccctcgtatgggacccaagagagagttgaaatttgctttggaatcattc 58609 Query: 170 tgggatgggaagagcagcgctgaggatctggagaaggttgccaccgacctcagggccagc 229 ||||| |||||||| || |||||| || |||||||| | | || || || || | Sbjct: 58608 tgggacaaaaagagcagtgccgaggatttgaagaaggtttctgctgatctaagagcatcc 58549 Query: 230 atctggaagcagatgtcagaggctgggatcaagtacattcccagcaacac 279 |||||||| |||||||| || | |||||||||||| || || |||||||| Sbjct: 58548 atctggaaacagatgtctgatgttgggatcaagtatatcccaagcaacac 58499
>gb|AC100153.10| Mus musculus chromosome 7, clone RP23-43N3, complete sequence Length = 132518 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 236 aagcagatgtcagaggctggga 257 |||||||||||||||||||||| Sbjct: 56772 aagcagatgtcagaggctggga 56793
>gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosome 7, complete sequence Length = 212016 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 236 aagcagatgtcagaggctggga 257 |||||||||||||||||||||| Sbjct: 10149 aagcagatgtcagaggctggga 10128
>emb|AL596254.2| Human DNA sequence from clone RP11-252L24 on chromosome 1 Contains part of the PLAC3 gene for placenta-specific 3 (PLAC3), complete sequence Length = 72207 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 actatgaccaggtgcttgaca 308 ||||||||||||||||||||| Sbjct: 51948 actatgaccaggtgcttgaca 51928
>gb|AE008803.1| Salmonella typhimurium LT2, section 107 of 220 of the complete genome Length = 23630 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 aaagatggcgtcccatattgt 114 ||||||||||||||||||||| Sbjct: 7904 aaagatggcgtcccatattgt 7884
>emb|AL627274.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 10/20 Length = 256050 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 aaagatggcgtcccatattgt 114 ||||||||||||||||||||| Sbjct: 64810 aaagatggcgtcccatattgt 64790
>gb|AC152452.3| Mus musculus BAC clone RP24-279M22 from chromosome 9, complete sequence Length = 176943 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 cctcctctgcctcccactctatcgt 36 ||||| ||||||||||||||||||| Sbjct: 72548 cctcccctgcctcccactctatcgt 72572
>gb|AC024704.9| Homo sapiens BAC clone RP11-97J14 from 2, complete sequence Length = 70869 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 gccatcctcctctgcctccca 27 ||||||||||||||||||||| Sbjct: 57113 gccatcctcctctgcctccca 57133
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 aaagatggcgtcccatattgt 114 ||||||||||||||||||||| Sbjct: 637072 aaagatggcgtcccatattgt 637092
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 aaagatggcgtcccatattgt 114 ||||||||||||||||||||| Sbjct: 638902 aaagatggcgtcccatattgt 638922
>tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete interleukin-1 gene cluster (Draft Contig) including IL1A (IL1F1), IL1B (IL1F2), IL1RN (IL1F3), IL1F5, IL1F6, IL1F7, IL1F8, IL1F9, IL1F10 Length = 495475 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 gccatcctcctctgcctccca 27 ||||||||||||||||||||| Sbjct: 442261 gccatcctcctctgcctccca 442281
>gb|AF036677.1|AF036677 Salmonella typhimurium putative operon regulated by PmrAB, necessary for 4-aminoarabinose lipid A modification and polymyxin resistance, PmrG (pmrG) gene, partial cds; PmrF (pmrF) gene and 6 orfs, complete cds; and PmrD (pmrD) gene, partial cds Length = 8051 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 aaagatggcgtcccatattgt 114 ||||||||||||||||||||| Sbjct: 4814 aaagatggcgtcccatattgt 4794
>gb|AC116501.7| Mus musculus chromosome 5, clone RP24-300D7, complete sequence Length = 174365 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 25325 ccatcctcctctgcctccca 25306
>ref|XM_509875.1| PREDICTED: Pan troglodytes similar to receptor-interacting serine-threonine kinase 3; receptor-interacting protein 3 (LOC452820), mRNA Length = 1620 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 gagcagcgctgaggatctggagaa 204 ||||||||||||||| |||||||| Sbjct: 141 gagcagcgctgaggaactggagaa 164
>gb|AC144816.3| Mus musculus BAC clone RP24-243E15 from chromosome 6, complete sequence Length = 167096 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 44312 ccatcctcctctgcctccca 44331
>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026G02, complete sequence Length = 123472 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 caaggaccaacgaaagatgg 101 |||||||||||||||||||| Sbjct: 36599 caaggaccaacgaaagatgg 36580
>gb|AC140921.2| Mus musculus BAC clone RP24-472I23 from chromosome 5, complete sequence Length = 181004 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 73190 ccatcctcctctgcctccca 73209
>gb|AC120884.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0017D19, complete sequence Length = 142015 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 caaggaccaacgaaagatgg 101 |||||||||||||||||||| Sbjct: 106585 caaggaccaacgaaagatgg 106566
>gb|AC073363.10| Homo sapiens 3 BAC RP11-293N1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184092 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 gtcagaggctgggatcaagtacat 267 ||||||||||||||||||| |||| Sbjct: 93580 gtcagaggctgggatcaagcacat 93557
>emb|AL513164.13| Human DNA sequence from clone RP11-400P17 on chromosome 6 Contains the 5' part of a novel gene, the 5' part of the gene for KIAA0790 protein (KIAA0790) and a CpG island, complete sequence Length = 154288 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 38385 ccatcctcctctgcctccca 38366
>emb|AL161651.13| Human DNA sequence from clone RP11-449I17 on chromosome 10 Contains the 5' end of a novel gene (DKFZp434I138) (FLJ10486), a pseudogene similar to part of dynamin 1 (DNM1), a golgin pseudogene, a MKI67 (FHA domain) interacting nucleolar phosphoprotein (MKI67IP) pseudogene, a cyclin D3 (CCND3) pseudogene, the MAP3K8 gene for mitogen-activated protein kinase kinase kinase 8, a heterogeneous nuclear ribonucleoprotein A1 (HRPA1) pseudogene, a pseudogene similar to part of SIN3 homolog A transcriptional regulator (yeast) (SIN3A) and a CpG island, complete sequence Length = 211627 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 93086 ccatcctcctctgcctccca 93067
>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7 Length = 348764 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 gggccagcatctggaagcag 241 |||||||||||||||||||| Sbjct: 194700 gggccagcatctggaagcag 194681
>emb|AL672236.18| Mouse DNA sequence from clone RP23-206L21 on chromosome 11 Contains a ribosomal protein S6 (Rps6) pseudogene, a novel gene, the gene for a novel immunoglobulin domain containing protein and two CpG islands, complete sequence Length = 219893 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gggagctcaagtttgccttggagt 164 |||||||||||||| ||||||||| Sbjct: 169582 gggagctcaagtttaccttggagt 169605
>emb|CR936843.10| Mouse DNA sequence from clone RP23-270K2 on chromosome 4, complete sequence Length = 128921 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 20657 ccatcctcctctgcctccca 20676
>gb|AC046170.6| Homo sapiens chromosome 17, clone RP11-219F9, complete sequence Length = 198470 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 63772 ccatcctcctctgcctccca 63791
>gb|AC156244.2| Xenopus tropicalis clone CH216-92I18, complete sequence Length = 140675 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 agaggctgggatcaagtaca 266 |||||||||||||||||||| Sbjct: 122738 agaggctgggatcaagtaca 122757
>gb|AC130458.2| Homo sapiens chromosome 16 clone CTA-388D4, complete sequence Length = 93519 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 ggaagcagatgtcagaggctggga 257 ||||||||| |||||||||||||| Sbjct: 13561 ggaagcagaggtcagaggctggga 13584
>gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, complete sequence Length = 171605 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cctcctctgcctcccactct 31 |||||||||||||||||||| Sbjct: 163025 cctcctctgcctcccactct 163006
>gb|AC021553.14| Homo sapiens chromosome 15, clone RP11-709B3, complete sequence Length = 185596 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cctcctctgcctcccactct 31 |||||||||||||||||||| Sbjct: 32241 cctcctctgcctcccactct 32222
>gb|AC092365.3| Homo sapiens chromosome 16 clone RP11-450B4, complete sequence Length = 181329 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 234 ggaagcagatgtcagaggctggga 257 ||||||||| |||||||||||||| Sbjct: 18561 ggaagcagaggtcagaggctggga 18538
>gb|AC067837.6| Homo sapiens chromosome 15, clone RP11-65B16, complete sequence Length = 173919 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 cctcctctgcctcccactct 31 |||||||||||||||||||| Sbjct: 62277 cctcctctgcctcccactct 62296
>dbj|AK087609.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230024E19 product:unclassifiable, full insert sequence Length = 2564 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 2410 ccatcctcctctgcctccca 2391
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 caaggaccaacgaaagatgg 101 |||||||||||||||||||| Sbjct: 22675799 caaggaccaacgaaagatgg 22675780
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 caaggaccaacgaaagatgg 101 |||||||||||||||||||| Sbjct: 18508598 caaggaccaacgaaagatgg 18508617
>gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, complete sequence Length = 226696 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 17079 ccatcctcctctgcctccca 17060
>gb|AC138645.3| Homo sapiens chromosome 17, clone RP11-995C19, complete sequence Length = 200420 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 13757 ccatcctcctctgcctccca 13776
>gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, complete sequence Length = 158617 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 124958 ccatcctcctctgcctccca 124977
>gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosome 7, complete sequence Length = 195204 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 agcagatgtcagaggctggg 256 |||||||||||||||||||| Sbjct: 118942 agcagatgtcagaggctggg 118961
>gb|AC004098.1|AC004098 Homo sapiens chromosome 17, clone HCIT305D20, complete sequence Length = 166978 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 62744 ccatcctcctctgcctccca 62763
>dbj|AP005773.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0085C03 Length = 188905 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 caaggaccaacgaaagatgg 101 |||||||||||||||||||| Sbjct: 91481 caaggaccaacgaaagatgg 91500
>dbj|AK109696.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-F01, full insert sequence Length = 1692 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 ctccgccgcccctcgactcctcca 83 |||||||||| ||||||||||||| Sbjct: 29 ctccgccgcctctcgactcctcca 52
>gb|U95737.1|HUU95737 Human Chromosome 16 BAC clone CIT987SK-A-388D4, complete sequence Length = 93431 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 ggaagcagatgtcagaggctggga 257 ||||||||| |||||||||||||| Sbjct: 13562 ggaagcagaggtcagaggctggga 13585
>gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complete sequence Length = 217265 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 agcagatgtcagaggctggg 256 |||||||||||||||||||| Sbjct: 48604 agcagatgtcagaggctggg 48623
>gb|U36197.1|CRU36197 Chlamydomonas reinhardtii cobalamin-independent methionine synthase mRNA, complete cds Length = 2927 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tatgaccaggtgcttgacac 309 |||||||||||||||||||| Sbjct: 305 tatgaccaggtgcttgacac 324
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 caaggaccaacgaaagatgg 101 |||||||||||||||||||| Sbjct: 22985710 caaggaccaacgaaagatgg 22985691
>gb|AC164652.3| Ornithorhynchus anatinus BAC clone OABb-566A1 from chromosome unknown, complete sequence Length = 145427 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tcctcctctgcctcccactc 30 |||||||||||||||||||| Sbjct: 75745 tcctcctctgcctcccactc 75726
>emb|AL844164.17| Mouse DNA sequence from clone RP23-300I3 on chromosome 4, complete sequence Length = 209214 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ccatcctcctctgcctccca 27 |||||||||||||||||||| Sbjct: 121377 ccatcctcctctgcctccca 121396
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127003 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ctccgccgcccctcgactcctcca 83 |||||||||| ||||||||||||| Sbjct: 56885 ctccgccgcctctcgactcctcca 56862
>gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, complete sequence Length = 187362 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 agcagatgtcagaggctggg 256 |||||||||||||||||||| Sbjct: 171137 agcagatgtcagaggctggg 171118
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cctcgactcctccaaggacc 89 |||||||||||||||||||| Sbjct: 1356462 cctcgactcctccaaggacc 1356443
>gb|AC152000.3| Ornithorhynchus anatinus chromosome UNK clone OABb-501A1, complete sequence Length = 149165 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tcctcctctgcctcccactc 30 |||||||||||||||||||| Sbjct: 49447 tcctcctctgcctcccactc 49466
>emb|AL840623.10| Mouse DNA sequence from clone RP23-289L17 on chromosome 4, complete sequence Length = 112610 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 accgacctcagggccagcat 231 |||||||||||||||||||| Sbjct: 57213 accgacctcagggccagcat 57194 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,451,254 Number of Sequences: 3902068 Number of extensions: 3451254 Number of successful extensions: 75209 Number of sequences better than 10.0: 105 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74867 Number of HSP's gapped (non-prelim): 339 length of query: 318 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 296 effective length of database: 17,147,199,772 effective search space: 5075571132512 effective search space used: 5075571132512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
