ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05g10 |
|---|---|
| Clone Library Name | barley_pub |
>RS9_PODAN (P52810) 40S ribosomal protein S9 (S7)| Length = 190 Score = 152 bits (384), Expect(2) = 2e-37 Identities = 77/111 (69%), Positives = 92/111 (82%) Frame = +2 Query: 98 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 277 R+Y KT K PRRP+E RLD+ELKLVGEYGLR KRE+WRV LS+IR AAR LLTLDEK Sbjct: 4 RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEK 63 Query: 278 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 +P+R+FEG AL+RR+ R G+L E + KLDYVLAL AE+FL RRLQTLV++L Sbjct: 64 DPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKL 114 Score = 21.9 bits (45), Expect(2) = 2e-37 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKSIHHA Sbjct: 115 GLAKSIHHA 123
>RS9_DICDI (P14132) 40S ribosomal protein S9 (40S ribosomal protein 1024)| (Vegetative-specific protein V12) Length = 185 Score = 151 bits (382), Expect(2) = 4e-37 Identities = 70/109 (64%), Positives = 93/109 (85%) Frame = +2 Query: 101 NYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKN 280 NY KT PRRP+EKER+DAELK+VGE+GL+ K E+WRVQYAL++IR AAR LL LDEK+ Sbjct: 4 NYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKD 63 Query: 281 PRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 P+RIFEG+ALLRR+++ G++ E ++KLDY+L L ++F+ RRLQTLVF+ Sbjct: 64 PKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFK 112 Score = 21.9 bits (45), Expect(2) = 4e-37 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKSIHHA Sbjct: 114 GLAKSIHHA 122
>RS9_RAT (P29314) 40S ribosomal protein S9| Length = 193 Score = 149 bits (376), Expect(2) = 2e-36 Identities = 73/107 (68%), Positives = 89/107 (83%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 10 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 69 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 +FEG ALLRR+ R G+L EG+ KLDY+L L E+FL RRLQT VF+L Sbjct: 70 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKL 116 Score = 21.9 bits (45), Expect(2) = 2e-36 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKSIHHA Sbjct: 117 GLAKSIHHA 125
>RS9_MOUSE (Q6ZWN5) 40S ribosomal protein S9| Length = 193 Score = 149 bits (376), Expect(2) = 2e-36 Identities = 73/107 (68%), Positives = 89/107 (83%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 10 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 69 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 +FEG ALLRR+ R G+L EG+ KLDY+L L E+FL RRLQT VF+L Sbjct: 70 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKL 116 Score = 21.9 bits (45), Expect(2) = 2e-36 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKSIHHA Sbjct: 117 GLAKSIHHA 125
>RS9_HUMAN (P46781) 40S ribosomal protein S9| Length = 193 Score = 149 bits (376), Expect(2) = 2e-36 Identities = 73/107 (68%), Positives = 89/107 (83%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 10 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 69 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 +FEG ALLRR+ R G+L EG+ KLDY+L L E+FL RRLQT VF+L Sbjct: 70 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKL 116 Score = 21.9 bits (45), Expect(2) = 2e-36 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKSIHHA Sbjct: 117 GLAKSIHHA 125
>RS9_PIG (Q29197) 40S ribosomal protein S9 (Fragment)| Length = 130 Score = 149 bits (376), Expect = 3e-36 Identities = 73/107 (68%), Positives = 89/107 (83%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 9 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 68 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 +FEG ALLRR+ R G+L EG+ KLDY+L L E+FL RRLQT VF+L Sbjct: 69 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKL 115
>RS9_DROME (P55935) 40S ribosomal protein S9| Length = 195 Score = 146 bits (369), Expect(2) = 1e-35 Identities = 72/109 (66%), Positives = 89/109 (81%) Frame = +2 Query: 104 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNP 283 + KT+ PRRPYEK RLD ELK++GEYGLR KRE+WRV+YAL++IR AAR LLTLDEK+ Sbjct: 10 FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDE 69 Query: 284 RRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 +R+F+G ALLRR+ R G+L E + KLDYVL L E+FL RRLQT VF+L Sbjct: 70 KRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKL 118 Score = 21.9 bits (45), Expect(2) = 1e-35 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKSIHHA Sbjct: 119 GLAKSIHHA 127
>RS9B_SCHPO (O59675) 40S ribosomal protein S9-B| Length = 191 Score = 146 bits (368), Expect(2) = 2e-35 Identities = 73/111 (65%), Positives = 87/111 (78%) Frame = +2 Query: 98 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 277 R KT+K PRRP+E RLDAELKL GEYGLR K E+WRV LS+IR AAR LLTLDEK Sbjct: 5 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEK 64 Query: 278 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 +P+R+FEG A++RR+ R G+L E + KLDYVLAL E+FL RRLQT VF+L Sbjct: 65 DPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKL 115 Score = 21.9 bits (45), Expect(2) = 2e-35 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKSIHHA Sbjct: 116 GLAKSIHHA 124
>RS9A_SCHPO (Q09757) 40S ribosomal protein S9-A| Length = 190 Score = 145 bits (366), Expect(2) = 3e-35 Identities = 73/111 (65%), Positives = 87/111 (78%) Frame = +2 Query: 98 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 277 R KT+K PRRP+E RLDAELKL GEYGLR K E+WRV LS+IR AAR LLTLDEK Sbjct: 5 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEK 64 Query: 278 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 +P+R+FEG A++RR+ R G+L E + KLDYVLAL E+FL RRLQT VF+L Sbjct: 65 DPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKL 115 Score = 21.9 bits (45), Expect(2) = 3e-35 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKSIHHA Sbjct: 116 GLAKSIHHA 124
>RS9_TRYBB (P17959) Probable 40S ribosomal protein S9| Length = 190 Score = 145 bits (366), Expect = 5e-35 Identities = 67/111 (60%), Positives = 87/111 (78%) Frame = +2 Query: 95 YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDE 274 Y N+ + +K PRRP+EKERLD E+KL G+YGLRCKRE+WRV LS++R AR LLTL E Sbjct: 4 YNNFNRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPE 63 Query: 275 KNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 +PRR+ EG+A++RR + YG L E +DKLDYVL+LT + L RRLQT+VF+ Sbjct: 64 NHPRRLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFK 114
>RS9B_YEAST (P05755) 40S ribosomal protein S9-B (S13) (YS11) (RP21) (YP28)| Length = 194 Score = 144 bits (362), Expect(2) = 1e-34 Identities = 69/111 (62%), Positives = 89/111 (80%) Frame = +2 Query: 98 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 277 R Y KT+ P+RPYE RLDAELKL GE+GL+ KRE++R+ + LS+IR AAR LLT DEK Sbjct: 5 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDEK 64 Query: 278 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 +P+R+FEG AL+RR+ R G+L+E + KLDYVLAL E+FL RRLQT V++L Sbjct: 65 DPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKL 115 Score = 21.6 bits (44), Expect(2) = 1e-34 Identities = 7/9 (77%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKS+HHA Sbjct: 116 GLAKSVHHA 124
>RS9A_YEAST (O13516) 40S ribosomal protein S9-A (S13) (YS11) (RP21) (YP28)| Length = 196 Score = 142 bits (359), Expect(2) = 2e-34 Identities = 68/111 (61%), Positives = 89/111 (80%) Frame = +2 Query: 98 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 277 R Y KT+ P+RPYE RLDAELKL GE+GL+ K+E++R+ + LS+IR AAR LLT DEK Sbjct: 5 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEK 64 Query: 278 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 +P+R+FEG AL+RR+ R G+L+E + KLDYVLAL E+FL RRLQT V++L Sbjct: 65 DPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKL 115 Score = 21.6 bits (44), Expect(2) = 2e-34 Identities = 7/9 (77%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKS+HHA Sbjct: 116 GLAKSVHHA 124
>RS9_CAEEL (Q20228) 40S ribosomal protein S9| Length = 189 Score = 139 bits (350), Expect(2) = 2e-33 Identities = 67/107 (62%), Positives = 87/107 (81%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K K PRRP+EKERLD ELKL+G +GL+ KRE+WRV+Y L+++R AAR LLTL++K+P+R Sbjct: 10 KVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKR 69 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 +FEG ALLRR+ + G+L E + KLDYVL L E+FL RRLQT VF+L Sbjct: 70 LFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKL 116 Score = 21.9 bits (45), Expect(2) = 2e-33 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKSIHHA Sbjct: 117 GLAKSIHHA 125
>RS9_NAEFO (Q25555) 40S ribosomal protein S9| Length = 186 Score = 135 bits (341), Expect(2) = 5e-32 Identities = 68/118 (57%), Positives = 87/118 (73%) Frame = +2 Query: 77 MVHVNFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARH 256 MV YR + K PRRP+EKER+D ELK+ G+YGL+ K+E+WR+QY L+R R ARH Sbjct: 1 MVQNRCYRVHSKVSLPPRRPFEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARH 60 Query: 257 LLTLDEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 LLTL E + +R FEGAALLRRM R GLL E + +LDY+L+L E+ L RRLQT+V +L Sbjct: 61 LLTLPEDDMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKL 118 Score = 20.8 bits (42), Expect(2) = 5e-32 Identities = 7/9 (77%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G++KSIHHA Sbjct: 119 GLSKSIHHA 127
>RS9_ENTHI (O15612) 40S ribosomal protein S9 (Fragment)| Length = 144 Score = 126 bits (317), Expect = 2e-29 Identities = 61/110 (55%), Positives = 83/110 (75%) Frame = +2 Query: 98 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 277 RN+ T+K P+ PYE+ER DAELKLVG++GL+ K+E+ RV Y L +R A+ +L D K Sbjct: 2 RNHSITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAK 61 Query: 278 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 +P+R+ EGAALLRR++ G+L Q+KL++VLAL EN L RRLQTLV+R Sbjct: 62 DPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYR 111
>RS4_THEAC (Q9HJD7) 30S ribosomal protein S4P| Length = 199 Score = 93.2 bits (230), Expect = 3e-19 Identities = 53/109 (48%), Positives = 74/109 (67%), Gaps = 3/109 (2%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHL---LTLDEKN 280 K + PR P+EKER+D E K+V +YGL+ K+E+WR + LS IR+ AR L L ++ N Sbjct: 9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVN 68 Query: 281 PRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 ++ E +++R+NRY LL+E LD VL+LT EN L RRLQT+VFR Sbjct: 69 AQKQLE--RMIKRLNRYKLLSENA-TLDDVLSLTVENILDRRLQTIVFR 114
>RS4_THEVO (Q97B95) 30S ribosomal protein S4P| Length = 200 Score = 88.2 bits (217), Expect = 9e-18 Identities = 48/109 (44%), Positives = 75/109 (68%), Gaps = 3/109 (2%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHL---LTLDEKN 280 K + PR P+EK+R+D E K++ +YGL+ KRE+WR + LS IR+ AR+L L + N Sbjct: 9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDAN 68 Query: 281 PRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 ++ E +++R++RY +L++ + LD VL+LT EN L RRLQT+VF+ Sbjct: 69 AQKQLE--RMIKRLSRYKILSD-KATLDDVLSLTVENILDRRLQTIVFK 114
>RS4_METJA (P54020) 30S ribosomal protein S4P| Length = 187 Score = 85.1 bits (209), Expect = 8e-17 Identities = 45/110 (40%), Positives = 67/110 (60%) Frame = +2 Query: 98 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 277 R + KT++ P P+ KER++ E +L +YGLR KRE+W+ + L + R AR L++ ++ Sbjct: 6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DR 63 Query: 278 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 + E L + +YG+L LD VL+LT E+ L RRLQTLVFR Sbjct: 64 TEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFR 113
>RS4_METKA (Q8TVC0) 30S ribosomal protein S4P| Length = 186 Score = 81.6 bits (200), Expect = 8e-16 Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 2/108 (1%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K ++ PR P+E ERL+ E KL+ +YGLR K+ELWR Q L R R A+ L+ + +R Sbjct: 9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR 68 Query: 290 IFEGAALLRRMNRYGLLAEGQDK--LDYVLALTAENFLXRRLQTLVFR 427 E AL R++ G+L + ++ LD +L LT E+ L RRLQT+V+R Sbjct: 69 --EREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYR 114
>RS4_PICTO (Q6KZP7) 30S ribosomal protein S4P| Length = 183 Score = 80.9 bits (198), Expect = 1e-15 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 1/107 (0%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHL-LTLDEKNPR 286 K + PR P+EK+R+DAE +L+ +YGL+ KRELWR Q L+ R AR L L +P Sbjct: 9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPL 68 Query: 287 RIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 I + L+ +++R LL E LD VL+L E+ L RRL+TLV++ Sbjct: 69 AIKQFQLLIGKLSRLNLLGENA-TLDDVLSLNIEDILERRLETLVYK 114
>RS4_METBF (Q46GC8) 30S ribosomal protein S4P| Length = 216 Score = 79.0 bits (193), Expect = 5e-15 Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 6/113 (5%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K+F+ PR P+++ R+ +E++LV YGLR KRE+W+ L R+ AR LL + R Sbjct: 9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQER 68 Query: 290 IFEG------AALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 EG +L ++ RYG++ D +D +L+L EN L RRLQT V RL Sbjct: 69 GLEGHQKTQSEEILAKLIRYGIIKSDAD-IDDILSLKTENILERRLQTQVLRL 120
>RS4_HALMA (Q00862) 30S ribosomal protein S4P (HmaS4)| Length = 171 Score = 78.6 bits (192), Expect = 7e-15 Identities = 46/106 (43%), Positives = 62/106 (58%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K ++ P P++ ER+ E L+G YGL+ K ELWR Q L R AR LL ++ Sbjct: 8 KFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHET- 66 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 E L R+ RYG+L E QD+LD VL+L + L RRLQT+V+R Sbjct: 67 --ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYR 109
>RS4_ARCFU (O28000) 30S ribosomal protein S4P| Length = 172 Score = 78.6 bits (192), Expect = 7e-15 Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Frame = +2 Query: 98 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLT---- 265 + + K + P P++K RL+ E++LV +YGLR KRELWR Q L + R AR LL Sbjct: 5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGL 64 Query: 266 LDEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 ++ + +++++N+ G+L E LD +L L+ E+FL RRLQT+V+R Sbjct: 65 PGKEGEIAKAKAQTVIKKLNKMGILPENA-TLDDILNLSVEDFLERRLQTMVYR 117
>RS4_AERPE (Q9YB58) 30S ribosomal protein S4P| Length = 171 Score = 75.9 bits (185), Expect = 5e-14 Identities = 42/106 (39%), Positives = 62/106 (58%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K ++ P+ P+ KERL+ E +L+G YGLR K+ELW+ + R R+ AR LL L + R Sbjct: 9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRRE 68 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 L+ + R GL+ +D VL + AE L RRLQT+V++ Sbjct: 69 --ASRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYK 112
>RS4_SULAC (P39467) 30S ribosomal protein S4P| Length = 176 Score = 75.5 bits (184), Expect = 6e-14 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Frame = +2 Query: 98 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLD-- 271 R K + P P+ K L E L+G+YGLR K+E+W Q + R+ AR LL L Sbjct: 5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPA 64 Query: 272 EKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 E+N R L++++ R G+L + LD +L+LT EN+L RRLQT+V++ Sbjct: 65 ERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYK 112
>RS4_PYRHO (O59306) 30S ribosomal protein S4P| Length = 180 Score = 74.7 bits (182), Expect = 1e-13 Identities = 46/106 (43%), Positives = 61/106 (57%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 E LL R+ R GLL E LD VL+LT E+ L RRLQT+V++ Sbjct: 68 -IEREQLLSRLKRLGLLPE-DAVLDDVLSLTVEDILERRLQTIVYK 111
>RS4_METMP (Q6LXN0) 30S ribosomal protein S4P| Length = 178 Score = 74.3 bits (181), Expect = 1e-13 Identities = 41/110 (37%), Positives = 62/110 (56%) Frame = +2 Query: 98 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 277 R GK + P P+ ER+ E ++ +YGL K+ELW+++ L R AR L++ + Sbjct: 5 RRLGKKYDTPNHPWIGERIQKEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DT 62 Query: 278 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 + E L + RY +L E + LD+VL+L E+ L RRLQT+VFR Sbjct: 63 TTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFR 112
>RS4_PYRFU (P61993) 30S ribosomal protein S4P| Length = 180 Score = 74.3 bits (181), Expect = 1e-13 Identities = 46/106 (43%), Positives = 61/106 (57%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 E LL R+ R GLL E LD VL+LT E+ L RRLQT+V++ Sbjct: 68 -IEREQLLARLKRLGLLPE-DAVLDDVLSLTIEDILERRLQTIVYK 111
>RS4_PYRAB (P61992) 30S ribosomal protein S4P| Length = 180 Score = 74.3 bits (181), Expect = 1e-13 Identities = 46/106 (43%), Positives = 61/106 (57%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 E LL R+ R GLL E LD VL+LT E+ L RRLQT+V++ Sbjct: 68 -IEREQLLARLKRLGLLPE-DAVLDDVLSLTIEDILERRLQTIVYK 111
>RS4_PYRKO (Q5JJF2) 30S ribosomal protein S4P| Length = 180 Score = 73.9 bits (180), Expect = 2e-13 Identities = 47/106 (44%), Positives = 59/106 (55%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K ++ P P+ KERLD E L Y L+ K+ELWR + L R AR LL K Sbjct: 9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE- 67 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 E LL+R+ R GLL LD VL+LT E+ L RRLQT+V+R Sbjct: 68 -IERQQLLQRLYRLGLL-PADAVLDDVLSLTVEDVLERRLQTIVYR 111
>RS4_SULSO (P95987) 30S ribosomal protein S4P| Length = 181 Score = 72.8 bits (177), Expect = 4e-13 Identities = 40/106 (37%), Positives = 64/106 (60%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K ++ P P+ KER+ E +L+G+YGLR KRE+W Q + + R+ AR LL L R Sbjct: 9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AER 66 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 L+ ++ + GLL + +D +L+LT ++ L RRLQT+V++ Sbjct: 67 AVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYK 112
>RS4_SULTO (Q96YV8) 30S ribosomal protein S4P| Length = 177 Score = 72.8 bits (177), Expect = 4e-13 Identities = 39/106 (36%), Positives = 62/106 (58%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 + ++ P P+ + L+ E L+G+YGLR KRELW Q + + R+ AR LL L R Sbjct: 9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP--AER 66 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 L++++ R G++ + LD +L L EN+L RRLQT+V++ Sbjct: 67 STREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYK 112
>RS4_METTH (O26142) 30S ribosomal protein S4P| Length = 171 Score = 72.4 bits (176), Expect = 5e-13 Identities = 44/110 (40%), Positives = 65/110 (59%) Frame = +2 Query: 98 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 277 R K + P P+ ER+ E +LV +YGL+ K+E+W+ + + R R AR+LL + + Sbjct: 5 RKARKKYDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGMASE 64 Query: 278 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 + + E LL + R G+L EG KL+ VL LT E+ L RRLQTLV + Sbjct: 65 HTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHK 111
>RS4_HALSA (Q9HQJ6) 30S ribosomal protein S4P| Length = 170 Score = 72.0 bits (175), Expect = 7e-13 Identities = 42/106 (39%), Positives = 59/106 (55%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K ++ P PY+ ER+ E L+ YGL+ K ELWR Q L R AR LL Sbjct: 9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTG 63 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 G + R+ R G+L+E +++LD VL+L + L RRLQT+V+R Sbjct: 64 TVSGEEFVARLQRIGILSE-EERLDDVLSLEVTDVLERRLQTVVYR 108
>RS4_METMA (Q8PV18) 30S ribosomal protein S4P| Length = 219 Score = 70.1 bits (170), Expect = 3e-12 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 7/114 (6%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTL------- 268 K+++ PR P+++ R+ AE++LV YGLR K+E+W+ L R+ AR LL Sbjct: 9 KSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQE 68 Query: 269 DEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 E + +L ++ RYG++ + +D +L+L EN L RRLQT V RL Sbjct: 69 GELEGHYATQSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRL 121
>RS4_METAC (Q8TRR1) 30S ribosomal protein S4P| Length = 218 Score = 68.9 bits (167), Expect = 6e-12 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 6/113 (5%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K+++ P+ P+++ R+ E++LV YGLR K+E+W+ L R+ AR LL Sbjct: 9 KSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEG 68 Query: 290 IFEG------AALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 EG +L ++ RYG++ + +D +L+L EN L RRLQT V RL Sbjct: 69 GLEGHYRTQSEEILSKLIRYGII-KSDANIDDILSLKTENILERRLQTQVLRL 120
>RS4_PYRAE (Q8ZTV1) 30S ribosomal protein S4P| Length = 159 Score = 66.2 bits (160), Expect(2) = 1e-11 Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 2/105 (1%) Frame = +2 Query: 122 KPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL--TLDEKNPRRIF 295 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM- 73 Query: 296 EGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFRL 430 ++ + G + + +LD +L+L L RRLQT+V+R+ Sbjct: 74 ---PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRM 115 Score = 21.9 bits (45), Expect(2) = 1e-11 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 430 GMAKSIHHA 456 G+AKSIHHA Sbjct: 116 GLAKSIHHA 124
>RS4_NATPD (Q3IQT8) 30S ribosomal protein S4P| Length = 174 Score = 66.2 bits (160), Expect = 4e-11 Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 1/107 (0%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 K ++ P P++ ER+ E L+ YGL K ELWR Q L R AR L+ + + Sbjct: 8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVA 67 Query: 290 IFE-GAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 E G+ L R+ R G+L + +D LD +L+L + L RRLQT+ +R Sbjct: 68 AAEAGSEFLARLKRIGVL-DDEDSLDDILSLDVTDILERRLQTVAYR 113
>RS4_NANEQ (Q74NF7) 30S ribosomal protein S4P| Length = 180 Score = 63.2 bits (152), Expect = 3e-10 Identities = 38/106 (35%), Positives = 60/106 (56%) Frame = +2 Query: 110 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 289 + ++ P P++K+RL E +L+ EYGL+ KRELW + + R AR+L Sbjct: 6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDI 65 Query: 290 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLXRRLQTLVFR 427 E L ++ + G+L+E + LD VL LT ++ L RRLQT++ R Sbjct: 66 SEEKERFLTKLKKLGVLSENAE-LDDVLDLTVKDVLERRLQTMLVR 110
>LMNA_CHICK (P13648) Lamin-A| Length = 657 Score = 29.6 bits (65), Expect = 3.8 Identities = 30/88 (34%), Positives = 41/88 (46%) Frame = +2 Query: 146 ERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRRIFEGAALLRRMN 325 + L AEL + + + +L V+ ALSR R R LL E+ E A + RM Sbjct: 299 DSLSAELSQLQKQLAAKEAKLREVEEALSREREGGRRLLAEKER------EMAEMRARMQ 352 Query: 326 RYGLLAEGQDKLDYVLALTAENFLXRRL 409 + L E Q+ LD LAL E R+L Sbjct: 353 QQ--LDEYQELLDIKLALDMEINAYRKL 378
>SOX7_MOUSE (P40646) Transcription factor SOX-7 (mSOX7)| Length = 380 Score = 29.3 bits (64), Expect = 4.9 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 15/85 (17%) Frame = -3 Query: 347 PQQGAHSGSCDEEELHPQR--------YGGD-------SSHPV*ASALQHYGSCSMHTGP 213 P+Q S SC EE HP Y + SHP+ + AL SM + Sbjct: 207 PEQTFFSSSCQEEHGHPHHLPHLPGPPYSPEFTPSPLHCSHPLGSLALGQSPGVSMMSSV 266 Query: 212 SRAHACTSVHTHPPALVLHPDAPSH 138 S + ++H LHP+ +H Sbjct: 267 SGCPPSPAYYSHATYHPLHPNLQAH 291
>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-)| (ATP-dependent helicase CHD4) (CHD-4) (Mi-2 autoantigen 218 kDa protein) (Mi2-beta) Length = 1912 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/56 (28%), Positives = 29/56 (51%) Frame = -1 Query: 373 KDVIKLVLALSKEPIAVHATKKSCTLKDTAGILLIQCEQVPCSITDPAQCILDPPE 206 +D IK+ KE ++ K+ +K TA I+C Q P ++ + +++PPE Sbjct: 1561 EDGIKIEENSLKEEESIEGEKE---VKSTAPETAIECTQAPAPASEDEKVVVEPPE 1613
>CH60_MYCGE (P47632) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 543 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -1 Query: 418 KSLKAPXKEVLSSQGKDVIKLVLALSKEPIAV 323 KSL+AP ++++ + G D +K++ L E V Sbjct: 454 KSLEAPARQIIQNSGVDPVKILSELKNEKTGV 485 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,891,477 Number of Sequences: 219361 Number of extensions: 1124638 Number of successful extensions: 3197 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 3064 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3161 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
