>ADAM8_MOUSE (Q05910) ADAM 8 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 8) (Cell surface antigen MS2)
           (Macrophage cysteine-rich glycoprotein) (CD156 antigen)
          Length = 826

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 39  RFPNQRANGREEKKIPSSPPRREPTSLSLPLCAGKDGSGGQVPVAVAGRGE 191
           + PNQ       K +P   P++   + + P    K G+GG VP A  G GE
Sbjct: 764 KIPNQFRPDPPTKPLPELKPKQVKPTFAPPTPPVKPGTGGTVPGATQGAGE 814

>BCHB_RHOS4 (Q9Z5D9) Light-independent protochlorophyllide reductase subunit B|
           (EC 1.18.-.-) (LI-POR subunit B) (DPOR subunit B)
          Length = 534

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 75  KKIPSSPPRREPTSLSLPLCAGKDGSGGQVPVAVAGRGEAVPRHAAE 215
           K +P+S PR +  + +LPL   +   GG +P       EA    A E
Sbjct: 436 KAVPASAPRADEAAEALPLTGAETAEGGSIPPEAVPPAEAAAVPAGE 482

>IL3B2_MOUSE (P26954) Interleukin-3 receptor class 2 beta chain precursor|
           (Interleukin-3 receptor class II beta chain)
           (Colony-stimulating factor 2 receptor, beta 2 chain)
          Length = 878

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 16/76 (21%)
 Frame = +3

Query: 3   PSRIHSFPRTTNRFPNQRANGREEKKIPSSPPRRE-------------PTSLSLPLCAGK 143
           PSR  + P  ++    Q  N + E  IPSS PR++             P S SLP   G+
Sbjct: 551 PSRPDTTPAASSESTEQLPNVQVEGPIPSSRPRKQLPSFDFNGPYLGPPQSHSLPDLPGQ 610

Query: 144 DGS---GGQVPVAVAG 182
            GS   GG +  A+ G
Sbjct: 611 LGSPQVGGSLKPALPG 626

>CTK1_RABIT (P49659) Voltage independent pH-sensitive potassium channel|
           (RACTK1)
          Length = 284

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 96  PRREPTSLSL---PLCAGKDGSGGQVPVAVAGRGEAVPRHAA 212
           PRR  T+L +   PLC+G   SGG  P A++      PRH A
Sbjct: 106 PRRAITALLILPTPLCSGSSDSGGIRPCAIS------PRHLA 141

>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation|
            protein 2 homolog) (Protein FMR-2)
          Length = 1272

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = +3

Query: 3    PSRIHSFPRTTNRFPNQRANGREEKK--------IPSSPPRREPTSLSLPLCAGKDGSGG 158
            P+  H  P T     ++RAN R+E+K        +P  PPRR   S       G +G  G
Sbjct: 847  PAPPHKPPNTRENNSSRRANRRKEEKLFPPPLSPLPEDPPRRRNVS-------GNNGPFG 899

Query: 159  Q 161
            Q
Sbjct: 900  Q 900

>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation|
            protein 2 homolog) (Protein FMR-2)
          Length = 1272

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = +3

Query: 3    PSRIHSFPRTTNRFPNQRANGREEKK--------IPSSPPRREPTSLSLPLCAGKDGSGG 158
            P+  H  P T     ++RAN R+E+K        +P  PPRR   S       G +G  G
Sbjct: 847  PAPPHKPPNTRENNSSRRANRRKEEKLFPPPLSPLPEDPPRRRNVS-------GNNGPFG 899

Query: 159  Q 161
            Q
Sbjct: 900  Q 900

>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2|
            protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile
            X E mental retardation syndrome protein)
          Length = 1311

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = +3

Query: 3    PSRIHSFPRTTNRFPNQRANGREEKK--------IPSSPPRREPTSLSLPLCAGKDGSGG 158
            P+  H  P T     ++RAN R+E+K        +P  PPRR   S       G +G  G
Sbjct: 886  PAPPHKPPNTRENNSSRRANRRKEEKLFPPPLSPLPEDPPRRRNVS-------GNNGPFG 938

Query: 159  Q 161
            Q
Sbjct: 939  Q 939

>WEE1_RAT (Q63802) Wee1-like protein kinase (EC 2.7.10.2)|
          Length = 646

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 413 AAALGVRTGTAWSRGSFSFSPKEEEERDLRCGEGEDEAWWHPHAP 279
           AAA  +R    +S GS     +EEEE       GED A+  P +P
Sbjct: 16  AAACSLRQKLIFSPGSDCEEEEEEEEEGSGHSTGEDSAFQEPDSP 60

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 84   PSSPPRREPTSLSLPLCAGKDGSGGQVPVA 173
            P+S P   P+S S P C+    SGG VP A
Sbjct: 1046 PTSTPPAGPSSSSQPPCSAAVSSGGNVPGA 1075

>NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 precursor (Notch|
           3) [Contains: Notch 3 extracellular truncation; Notch 3
           intracellular domain]
          Length = 2321

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 57  ANGREEKKIPSSPPRREPTSLSLPLCAGKDGSGGQVPVAVAG 182
           A GR  ++ P SPP   P   +LPL     G G   P  + G
Sbjct: 5   ARGRRRRRRPMSPPPPPPPVRALPLLLLLAGPGAAAPPCLDG 46

>M3K14_HUMAN (Q99558) Mitogen-activated protein kinase kinase kinase 14 (EC|
           2.7.11.25) (NF-kappa beta-inducing kinase)
           (Serine/threonine-protein kinase NIK) (HsNIK)
          Length = 947

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 24  PRTTNRFPNQRANGREEKKIPSSPPRREPTSLSLPLCAGKDGSGGQVPVAVAGRGEAVPR 203
           PR     P +   GR  K  P  PP     + S PL   K+ SG   P+ ++    A  R
Sbjct: 695 PRAPGPRPAEETTGRAPKLQPPLPPEPPEPNKSPPLTLSKEESGMWEPLPLSSLEPAPAR 754

Query: 204 H 206
           +
Sbjct: 755 N 755

>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2|
          Length = 925

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
 Frame = -1

Query: 190 SPRPATATGTWPPL------PSFPAQRGRERDVGSRRGGEEG 83
           +PRP  + G  PP       P  PA+ G  R  G R GG  G
Sbjct: 206 APRPGASPGNMPPRPGGVGGPGRPARPGAPRPGGGRPGGPGG 247

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 84   PSSPPRREPTSLSLPLCAGKDGSGGQVPVA 173
            P+S P   P+S S P C+    SGG VP A
Sbjct: 1046 PTSTPPAGPSSSSQPPCSAAVSSGGSVPGA 1075

>ATG4_CRYNE (Q5K9L9) Cysteine protease ATG4 (EC 3.4.22.-) (Autophagy-related|
            protein 4)
          Length = 1193

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 45   PNQRANGREEKKIPSSPPRREPTSLSLPLCAGKDGSGG 158
            P    NG  E++ P  P R    S   P+C GK+   G
Sbjct: 1152 PRYEQNGETEQERPVFPARNRMESWVEPVCEGKEAPNG 1189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,891,916
Number of Sequences: 219361
Number of extensions: 841979
Number of successful extensions: 4016
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4012
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)