>CATE_HUMAN (P14091) Cathepsin E precursor (EC 3.4.23.34)|
          Length = 401

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -2

Query: 304 GYPAVAV--VHPFLERIIDRNLVFRDSFDV*SKHFENQGYNCQYISGHAKHSNLLAFIIE 131
           GYP++AV  V P  + ++ +NLV    F V        G   + I G   HS+    +  
Sbjct: 193 GYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNW 252

Query: 130 FPLPSYCWWLSTVD 89
            P+    +W   +D
Sbjct: 253 VPVTKQAYWQIALD 266

>GLMU_MANSM (Q65R54) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 457

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 19/37 (51%), Positives = 21/37 (56%)
 Frame = +1

Query: 19  ELAPSSVSEDGDFGARASKGTFARRLCSATSNNLAEE 129
           E+ P SV ED   GARAS G F+R    A    LAEE
Sbjct: 309 EIKPYSVFEDSTIGARASIGPFSRLRPGA---ELAEE 342

>Y968_MYCBO (P64766) Hypothetical protein Mb0968c|
          Length = 346

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 44  KMGTSELEQAKARLHVDCAQPPAITWQRKFDDEGKKVAML 163
           + G  +L + +AR  +   +P +  W R FD  GK++A++
Sbjct: 9   RRGHRKLVRFQARRAIGPIRPTSAAWDRDFDPAGKRIAVV 48

>Y943_MYCTU (P64765) Hypothetical protein Rv0943c/MT0969|
          Length = 346

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 44  KMGTSELEQAKARLHVDCAQPPAITWQRKFDDEGKKVAML 163
           + G  +L + +AR  +   +P +  W R FD  GK++A++
Sbjct: 9   RRGHRKLVRFQARRAIGPIRPTSAAWDRDFDPAGKRIAVV 48

>CSN7B_MOUSE (Q8BV13) COP9 signalosome complex subunit 7b (Signalosome subunit|
           7b) (SGN7b) (JAB1-containing signalosome subunit 7b)
          Length = 264

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 262 SSQEMDGQLLPRGTPRRTRFRKYRKKLQRVLSAVSN 369
           S+QEM+ QL  R  P  T  R+  KK+ +V   VS+
Sbjct: 227 SAQEMEQQLAERECPPHTEQRQPTKKMSKVKGLVSS 262

>NARI_BACSU (P42177) Nitrate reductase gamma chain (EC 1.7.99.4)|
          Length = 223

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 95  CAQPPAITWQRKFDDEGKKVAMLSMATDILTIIPLIFKML 214
           C     +T++R FD   K++   S  +DILT++ L+F ML
Sbjct: 101 CTGLVILTYRRLFD---KRIRKTSSPSDILTLLLLLFMML 137

>CHD4_MOUSE (Q6PDQ2) Chromodomain helicase-DNA-binding protein 4 (CHD-4)|
          Length = 1915

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 2    GLQVQPNWLLHRSLKMGTSELEQAKARLHVDCAQPPA 112
            G++++ N L       G  E++       V+CAQPPA
Sbjct: 1556 GIKIEENSLKEEESTEGEKEVKSTAPEATVECAQPPA 1592


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,821,209
Number of Sequences: 219361
Number of extensions: 1308234
Number of successful extensions: 3402
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3402
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)