Clone Name | bastl05f12 |
---|---|
Clone Library Name | barley_pub |
>emb|CR711211.2|CNS0GBPZ Tetraodon nigroviridis full-length cDNA Length = 1375 Score = 42.1 bits (21), Expect = 0.38 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 ccgcctccgcgtccgcgccgt 100 ||||||||||||||||||||| Sbjct: 389 ccgcctccgcgtccgcgccgt 409
>ref|NM_186361.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1848 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 ccccgcctccgcgtccgcgccgtc 101 ||||||||||||||||||| |||| Sbjct: 396 ccccgcctccgcgtccgcgtcgtc 419
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 ccccgcctccgcgtccgcgccgtc 101 ||||||||||||||||||| |||| Sbjct: 22744371 ccccgcctccgcgtccgcgtcgtc 22744348
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ccatggccgacgaccactac 75 |||||||||||||||||||| Sbjct: 6978695 ccatggccgacgaccactac 6978714
>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470A03 Length = 133167 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ccatggccgacgaccactac 75 |||||||||||||||||||| Sbjct: 72317 ccatggccgacgaccactac 72336
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cgcctccgcgtccgcgccgt 100 |||||||||||||||||||| Sbjct: 2232928 cgcctccgcgtccgcgccgt 2232947
>dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1092_A07 Length = 137081 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 ccccgcctccgcgtccgcgccgtc 101 ||||||||||||||||||| |||| Sbjct: 63713 ccccgcctccgcgtccgcgtcgtc 63690
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 ccgcctccgcgtccgcgccgtctt 103 |||||||||||||||| ||||||| Sbjct: 2055535 ccgcctccgcgtccgccccgtctt 2055512
>ref|XM_653309.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0797.2), mRNA Length = 2604 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 72 ctacaaccccgcctccgcgtccg 94 |||| |||||||||||||||||| Sbjct: 24 ctacgaccccgcctccgcgtccg 46
>emb|CR626926.1| Aegilops tauschii Length = 94421 Score = 38.2 bits (19), Expect = 5.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 56 ccatggccgacgaccactacaaccccg 82 |||| ||||||||| |||||||||||| Sbjct: 67062 ccatcgccgacgactactacaaccccg 67036
>emb|AL035551.6|HS1100E15 Human DNA sequence from clone RP5-1100E15 on chromosome Xq22.1-22.3 Contains a checkpoint suppressor 1 (CHES1) pseudogene, a nuclear RNA export factor (NXF) family pseudogene, the gene for a novel protein (FLJ12969, FLJ39373) and a histone 3 H3 (HIST3H3) pseudogene, complete sequence Length = 103344 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 tggccgacgaccactacaa 77 ||||||||||||||||||| Sbjct: 28604 tggccgacgaccactacaa 28586
>ref|NM_077005.1| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-57) (pqn-57) mRNA, complete cds Length = 1137 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 cgacgaccactacaacccc 81 ||||||||||||||||||| Sbjct: 362 cgacgaccactacaacccc 380
>ref|NM_077006.1| Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-9) (abu-9) mRNA, complete cds Length = 1137 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 cgacgaccactacaacccc 81 ||||||||||||||||||| Sbjct: 362 cgacgaccactacaacccc 380
>gb|U64859.1| Caenorhabditis elegans cosmid R09F10, complete sequence Length = 31934 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 cgacgaccactacaacccc 81 ||||||||||||||||||| Sbjct: 27945 cgacgaccactacaacccc 27963 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 cgacgaccactacaacccc 81 ||||||||||||||||||| Sbjct: 25820 cgacgaccactacaacccc 25802 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 290,970 Number of Sequences: 3902068 Number of extensions: 290970 Number of successful extensions: 19159 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19079 Number of HSP's gapped (non-prelim): 80 length of query: 126 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 105 effective length of database: 17,151,101,840 effective search space: 1800865693200 effective search space used: 1800865693200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)