ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl05f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR711211.2|CNS0GBPZ Tetraodon nigroviridis full-length cDNA 42 0.38
2ref|NM_186361.1| Oryza sativa (japonica cultivar-group), mRNA 40 1.5
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
5dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
6dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 1.5
7dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
8gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 1.5
9ref|XM_653309.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 5.9
10emb|CR626926.1| Aegilops tauschii 38 5.9
11emb|AL035551.6|HS1100E15 Human DNA sequence from clone RP5-1100E... 38 5.9
12ref|NM_077005.1| Caenorhabditis elegans Prion-like-(Q/N-rich)-do... 38 5.9
13ref|NM_077006.1| Caenorhabditis elegans Activated in Blocked Unf... 38 5.9
14gb|U64859.1| Caenorhabditis elegans cosmid R09F10, complete sequ... 38 5.9

>emb|CR711211.2|CNS0GBPZ Tetraodon nigroviridis full-length cDNA
          Length = 1375

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 80  ccgcctccgcgtccgcgccgt 100
           |||||||||||||||||||||
Sbjct: 389 ccgcctccgcgtccgcgccgt 409



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>ref|NM_186361.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1848

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 78  ccccgcctccgcgtccgcgccgtc 101
           ||||||||||||||||||| ||||
Sbjct: 396 ccccgcctccgcgtccgcgtcgtc 419



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 78       ccccgcctccgcgtccgcgccgtc 101
                ||||||||||||||||||| ||||
Sbjct: 22744371 ccccgcctccgcgtccgcgtcgtc 22744348



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 56      ccatggccgacgaccactac 75
               ||||||||||||||||||||
Sbjct: 6978695 ccatggccgacgaccactac 6978714



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>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0470A03
          Length = 133167

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    ccatggccgacgaccactac 75
             ||||||||||||||||||||
Sbjct: 72317 ccatggccgacgaccactac 72336



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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 81      cgcctccgcgtccgcgccgt 100
               ||||||||||||||||||||
Sbjct: 2232928 cgcctccgcgtccgcgccgt 2232947



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>dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1092_A07
          Length = 137081

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    ccccgcctccgcgtccgcgccgtc 101
             ||||||||||||||||||| ||||
Sbjct: 63713 ccccgcctccgcgtccgcgtcgtc 63690



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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 80      ccgcctccgcgtccgcgccgtctt 103
               |||||||||||||||| |||||||
Sbjct: 2055535 ccgcctccgcgtccgccccgtctt 2055512



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>ref|XM_653309.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0797.2),
          mRNA
          Length = 2604

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 72 ctacaaccccgcctccgcgtccg 94
          |||| ||||||||||||||||||
Sbjct: 24 ctacgaccccgcctccgcgtccg 46



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>emb|CR626926.1| Aegilops tauschii
          Length = 94421

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 56    ccatggccgacgaccactacaaccccg 82
             |||| ||||||||| ||||||||||||
Sbjct: 67062 ccatcgccgacgactactacaaccccg 67036



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>emb|AL035551.6|HS1100E15 Human DNA sequence from clone RP5-1100E15 on chromosome Xq22.1-22.3
             Contains a checkpoint suppressor 1 (CHES1) pseudogene, a
             nuclear RNA export factor (NXF) family pseudogene, the
             gene for a novel protein (FLJ12969, FLJ39373) and a
             histone 3 H3 (HIST3H3) pseudogene, complete sequence
          Length = 103344

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 59    tggccgacgaccactacaa 77
             |||||||||||||||||||
Sbjct: 28604 tggccgacgaccactacaa 28586



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>ref|NM_077005.1| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein
           family member (pqn-57) (pqn-57) mRNA, complete cds
          Length = 1137

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 63  cgacgaccactacaacccc 81
           |||||||||||||||||||
Sbjct: 362 cgacgaccactacaacccc 380



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>ref|NM_077006.1| Caenorhabditis elegans Activated in Blocked Unfolded protein
           response family member (abu-9) (abu-9) mRNA, complete
           cds
          Length = 1137

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 63  cgacgaccactacaacccc 81
           |||||||||||||||||||
Sbjct: 362 cgacgaccactacaacccc 380



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>gb|U64859.1| Caenorhabditis elegans cosmid R09F10, complete sequence
          Length = 31934

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    cgacgaccactacaacccc 81
             |||||||||||||||||||
Sbjct: 27945 cgacgaccactacaacccc 27963



 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    cgacgaccactacaacccc 81
             |||||||||||||||||||
Sbjct: 25820 cgacgaccactacaacccc 25802


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 290,970
Number of Sequences: 3902068
Number of extensions: 290970
Number of successful extensions: 19159
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19079
Number of HSP's gapped (non-prelim): 80
length of query: 126
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 105
effective length of database: 17,151,101,840
effective search space: 1800865693200
effective search space used: 1800865693200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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