Clone Information

BLAST Search Result

Clone Name	bastl05f11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2	33	0.23
2	BEGIN_SHEEP (Q6R6L0) Brain-enriched guanylate kinase-associated ...	33	0.30
3	HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engra...	32	0.67
4	Y1786_VIBCH (Q9KR57) Putative radC-like protein VC1786	32	0.87
5	PACC_YEAST (P33400) pH-response transcription factor pacC/RIM101...	31	1.1
6	5HT6R_RAT (P31388) 5-hydroxytryptamine 6 receptor (5-HT-6) (Sero...	31	1.1
7	TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.2...	31	1.1
8	SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Tra...	31	1.5
9	KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H...	31	1.5
10	ENV_FSVSM (P21445) Env polyprotein precursor [Contains: Coat pro...	30	1.9
11	ENV_FLVC6 (P21443) Env polyprotein precursor [Contains: Coat pro...	30	1.9
12	E1A_ADE05 (P03255) Early E1A 32 kDa protein	30	2.5
13	EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase E...	30	3.3
14	MDCB_PSEAE (Q9I6S9) Probable 2-(5''-triphosphoribosyl)-3'-dephos...	30	3.3
15	HIP_PARSP (P00264) High-potential iron-sulfur protein (HiPIP)	30	3.3
16	KCNH2_RAT (O08962) Potassium voltage-gated channel subfamily H m...	30	3.3
17	MTB_SALAL (P68502) Metallothionein B (MT-B)	29	4.3
18	MTB_ONCMY (P68501) Metallothionein B (MT-B)	29	4.3
19	ENV_FLVCS (Q02077) Env polyprotein precursor [Contains: Coat pro...	29	4.3
20	TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)	29	4.3
21	ENV_FLVGL (P08359) Env polyprotein precursor [Contains: Coat pro...	29	4.3
22	ENV_FSVGA (P03391) Env polyprotein precursor [Contains: Coat pro...	29	4.3
23	JDP_DROME (Q9TVP3) J domain-containing protein (dJDP)	29	4.3
24	HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-l...	29	4.3
25	ENV_FLVCA (Q02076) Env polyprotein precursor [Contains: Coat pro...	29	4.3
26	HUNB_DROCY (O46238) Protein hunchback (Fragments)	29	5.7
27	HXB13_MOUSE (P70321) Homeobox protein Hox-B13	29	5.7
28	ENV_RMCFV (P06445) Env polyprotein precursor (Coat polyprotein) ...	29	5.7
29	SYFA_CAUCR (Q9A9E4) Phenylalanyl-tRNA synthetase alpha chain (EC...	29	5.7
30	ENV_MLVF5 (P03390) Env polyprotein precursor [Contains: Coat pro...	29	5.7
31	SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Tra...	28	7.4
32	ENV_MLVFF (P26804) Env polyprotein precursor [Contains: Coat pro...	28	7.4
33	KCNH2_CANFA (Q9TSZ3) Potassium voltage-gated channel subfamily H...	28	7.4
34	E1A_ADE02 (P03254) Early E1A 32 kDa protein	28	7.4
35	VSIG2_MOUSE (Q9Z109) V-set and immunoglobulin domain-containing ...	28	7.4
36	BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec...	28	7.4
37	TA29_TOBAC (P24804) Anther-specific protein TA-29	28	7.4
38	CP306_DROME (Q9VWR5) Cytochrome P450 306a1 (EC 1.14.-.-) (CYPCCC...	28	9.7
39	HNRL1_HUMAN (Q9BUJ2) Heterogeneous nuclear ribonucleoprotein U-l...	28	9.7
40	CS021_PONPY (Q5RBH3) Protein C19orf21 homolog	28	9.7
41	RADC_VIBVY (Q7MPS7) DNA repair protein radC homolog	28	9.7
42	RADC_VIBVU (Q8DDY0) DNA repair protein radC homolog	28	9.7
43	RADC_VIBCH (Q9KVC9) DNA repair protein radC homolog	28	9.7
44	HXB13_HUMAN (Q92826) Homeobox protein Hox-B13	28	9.7
45	TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) ...	28	9.7
46	RHSD_ECOLI (P16919) Protein rhsD precursor	28	9.7
47	HUNB_DROSL (O46256) Protein hunchback (Fragments)	28	9.7
48	ENV_FLVSA (P06752) Env polyprotein precursor [Contains: Coat pro...	28	9.7
49	MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (...	28	9.7

>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -1

Query: 428 ATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAIT-TPSDAWPR 252
           A   P A   PA +P Q PRP P  P   PR + +A      P   A   T  P+ + P+
Sbjct: 107 AAQQPAAPSAPAPAPSQGPRPTP-GPKPAPRPAPAAPEFTAPPAAPAAPSTPAPAPSGPK 165

Query: 251 AGDA 240
            G A
Sbjct: 166 PGGA 169

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>BEGIN_SHEEP (Q6R6L0) Brain-enriched guanylate kinase-associated protein|
          Length = 653

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 22/61 (36%), Positives = 28/61 (45%)
 Frame = -1

Query: 368 PVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGDAECSRRTSSDSASVTPLL 189
           P P   LR+ R S     M  SP     A  +P  A+PRAG +  SR+ S   A +   L
Sbjct: 592 PEPELSLRSSRDSLEPSSMEASPEMHPGARLSPQPAFPRAGSSGLSRKDSLTKAQLYGTL 651

Query: 188 L 186
           L
Sbjct: 652 L 652

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>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed|
          Length = 596

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = -1

Query: 389 SPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGDAECSRRTSSDS 210
           SP+ AP P   H       ST+   MA +    AC  TT + +   +G +  S  T  + 
Sbjct: 8   SPQSAPSPPHHHHSSQSPTSTTTVTMATASPVPACTTTTTTTS--TSGASAASSPTRDEM 65

Query: 209 ASVTPLLLLH---TPIGA 165
           + V P+  LH    P+G+
Sbjct: 66  SLVVPISPLHIKQEPLGS 83

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>Y1786_VIBCH (Q9KR57) Putative radC-like protein VC1786|
          Length = 158

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 354 PAQEPPRVDQRLPDGLQPLQVRLRDHHAVGRLAAS 250
           P+Q   R+ QRL D L  + +R+ DH  VG+ + S
Sbjct: 117 PSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVS 151

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>PACC_YEAST (P33400) pH-response transcription factor pacC/RIM101 (pH-response|
           regulator protein RIM101) (Regulator of IME2 protein 1)
          Length = 625

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -1

Query: 335 GSTSACRMACSPCRSACAITTPSDAWPRAGDAECSRRTSSDSASVTPLLLLHTPIG 168
           GSTS+   +C P  S   + TP      A     +  +SSDS+S +PL   H P G
Sbjct: 78  GSTSS---SCLPYHSTSHLNTPPYDLLGASAVSPTTSSSSDSSSSSPLAQAHNPAG 130

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>5HT6R_RAT (P31388) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin|
           receptor 6) (ST-B17)
          Length = 436

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 22/63 (34%), Positives = 24/63 (38%)
 Frame = -1

Query: 419 LPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGDA 240
           LP  H  P H P  A  P P  PL       SAC   C        I TP    PRA  +
Sbjct: 335 LPCVHCPPEHRP--ALPPPPCGPLTAVPDQASACSRCCLCLCRQTQIQTPLQGAPRACSS 392

Query: 239 ECS 231
           + S
Sbjct: 393 QPS 395

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>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 543

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
 Frame = -1

Query: 410 AHLTPAHSPEQAP---RPVPFHPLRNPRGSTSACRMA--CSPCRSACAITTPSDAWPRAG 246
           A  +PA +P QA     P    P R P  ++ A       SP R++ A   PS +   +G
Sbjct: 21  ARTSPARAPPQASPARTPPQASPARTPPQASPARAPPPQASPARASPARAPPSRS--SSG 78

Query: 245 DAECSRRTSSDSASVTPLLLLHTPIGAI 162
            +  +R  S+ S+     L+  TP+GA+
Sbjct: 79  RSSSARSASTTSSPTRVYLVRATPVGAV 106

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>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional|
           corepressor Sin3a) (Histone deacetylase complex subunit
           Sin3a)
          Length = 1282

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 19/87 (21%), Positives = 37/87 (42%)
 Frame = -1

Query: 431 SATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPR 252
           + TT  + H  P H  +  P+P P HP   P   ++      +P  +A  ++ PS     
Sbjct: 201 NVTTPGQVHQIPTHGIQPQPQPPPQHP-SQPSSQSAPTPAQPAPQPTAAKVSKPSQLQAH 259

Query: 251 AGDAECSRRTSSDSASVTPLLLLHTPI 171
              ++ +      ++  +P +  HTP+
Sbjct: 260 TPASQQTPPLPPYASPRSPPVQPHTPV 286

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>KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H member 2|
           (Voltage-gated potassium channel subunit Kv11.1)
           (Ether-a-go-go related gene potassium channel 1) (H-ERG)
           (Erg1) (Ether-a-go-go related protein 1) (Eag-related
           protein 1) (eag homo
          Length = 1159

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
 Frame = -1

Query: 413 RAHLTPAHSPEQAPRPVPF---HPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGD 243
           RA + P   P  AP  +P    H L NP  S S+C +A +  R +CA    + +   A D
Sbjct: 232 RALVGPGSPPRSAPGQLPSPRAHSL-NPDASGSSCSLARTRSRESCASVRRASS---ADD 287

Query: 242 AECSRRTSSDSASVTPLLLLHTPIGAI--LRNG 150
            E  R      A V P    H   GA+  LR+G
Sbjct: 288 IEAMR------AGVLPPPPRHASTGAMHPLRSG 314

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>ENV_FSVSM (P21445) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 645

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
 Frame = -1

Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261
           T+PR H    +  +Q       H L  P G+  AC    +PC S   +   SD       
Sbjct: 367 TVPRTHQALCNKTQQGHTGA--HYLAAPNGTYWACNTGLTPCISMAVLNWTSDFCVLIEL 424

Query: 260 WPR 252
           WPR
Sbjct: 425 WPR 427

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>ENV_FLVC6 (P21443) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 668

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
 Frame = -1

Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261
           T+P+ H    +  ++  R    H L  P G+  AC    +PC S   +   SD       
Sbjct: 384 TVPKTHQALCNKTQKGHRGT--HYLVAPNGTYWACNTGLTPCISMAVLNWTSDFCVLTEL 441

Query: 260 WPRA---------GDAECSRRTSSDSASVTPLLLL-HTPIGAILRN 153
           WPR             E   R   D  S+T  L+L    +G + RN
Sbjct: 442 WPRITYHEPEYIYSHFENKPRFKRDPISLTVALMLGGITVGGMARN 487

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>E1A_ADE05 (P03255) Early E1A 32 kDa protein|
          Length = 289

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 386 PEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPS 267
           PE  P P P  P R P+ + +  R   SP    C  +T S
Sbjct: 192 PEPEPEPEPARPTRRPKMAPAILRRPTSPVSRECNSSTDS 231

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>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor|
           (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS
           MICROSPOROCYTES1 protein)
          Length = 1192

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 262 ASDGVVIAQADLQGLQAIRQALVDPRGFLSGWNGTGLGACSGEWAGVKCARGKVVAL 432
           +S  +V   ++   L + +++L +P   LS WN +   A   +W GV C  G+V +L
Sbjct: 16  SSSAIVDLSSETTSLISFKRSLENP-SLLSSWNVSS-SASHCDWVGVTCLLGRVNSL 70

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>MDCB_PSEAE (Q9I6S9) Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A|
           synthase (EC 2.7.8.25)
           (2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase)
          Length = 293

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +3

Query: 87  ASRVALGLDPGASGGSGRAWLAVT*YGTNGCVEEQ*WCHARAVTAGPP 230
           A R+AL  DP A+ G          YG  G  EE   C  RAV  G P
Sbjct: 139 AGRIALLDDPAAAIGDSHGERVRRRYGVGGAREEARLCFPRAVRHGLP 186

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>HIP_PARSP (P00264) High-potential iron-sulfur protein (HiPIP)|
          Length = 71

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 256 GQASDGVVIAQADLQGLQAIRQALVDPRGFLSGW 357
           G+  D  +  QAD QG Q   Q  V+P G+   W
Sbjct: 34  GEQCDNCMFFQADSQGCQLFPQNSVEPAGWCQSW 67

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>KCNH2_RAT (O08962) Potassium voltage-gated channel subfamily H member 2|
           (Voltage-gated potassium channel subunit Kv11.1)
           (Ether-a-go-go-related gene potassium channel 1) (ERG1)
           (r-ERG) (RERG) (Ether-a-go-go-related protein 1)
           (Eag-related protein 1)
          Length = 1163

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
 Frame = -1

Query: 413 RAHLTPAHSPEQA----PRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAG 246
           RA + PA +   A    P P P     NP  S S+C +A +  R +CA    + +   A 
Sbjct: 232 RALVGPASASPVASIPGPHPSPRAQSLNPDASGSSCSLARTRSRESCASVRRASS---AD 288

Query: 245 DAECSRRTSSDSASVTPLLLLHTPIGAI--LRNG 150
           D E  R      A   PL   H   GA+  LR+G
Sbjct: 289 DIEAMR------AGALPLPPRHASTGAMHPLRSG 316

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>MTB_SALAL (P68502) Metallothionein B (MT-B)|
          Length = 60

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -1

Query: 344 NPRGSTSACRMACSPCRSACAITTPSDAWPRAGDAECSRRTSSDS 210
           N  GS      AC+ C+ +C    PSD    A    C  +T   S
Sbjct: 13  NCGGSCKCSNCACTSCKKSCCPCCPSDCSKCASGCVCKGKTCDTS 57

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>MTB_ONCMY (P68501) Metallothionein B (MT-B)|
          Length = 60

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -1

Query: 344 NPRGSTSACRMACSPCRSACAITTPSDAWPRAGDAECSRRTSSDS 210
           N  GS      AC+ C+ +C    PSD    A    C  +T   S
Sbjct: 13  NCGGSCKCSNCACTSCKKSCCPCCPSDCSKCASGCVCKGKTCDTS 57

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>ENV_FLVCS (Q02077) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E] (Fragment)
          Length = 436

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
 Frame = -1

Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261
           T+P+ H    +  +Q       H L  P G+  AC    +PC S   +   SD       
Sbjct: 334 TVPKTHQALCNKTQQGHTGA--HYLAAPNGTYWACNTGLTPCISMAVLNWTSDFCVLIEL 391

Query: 260 WPR 252
           WPR
Sbjct: 392 WPR 394

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>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)|
          Length = 367

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 341 PRGSTSACRMACSPCRSACAITTPSDA 261
           P  S S+C  + S C SA A +TPS A
Sbjct: 266 PSSSASSCSSSASSCSSASAASTPSGA 292

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>ENV_FLVGL (P08359) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 642

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
 Frame = -1

Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261
           T+P+ H    +  +Q       H L  P G+  AC    +PC S   +   SD       
Sbjct: 364 TVPKTHQALCNKTQQGHTGA--HYLAAPNGTYWACNTGLTPCISMAVLNWTSDFCVLIEL 421

Query: 260 WPR 252
           WPR
Sbjct: 422 WPR 424

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>ENV_FSVGA (P03391) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E; R protein]
          Length = 662

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
 Frame = -1

Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261
           T+P+ H    +  +Q       H L  P G+  AC    +PC S   +   SD       
Sbjct: 384 TVPKTHQALCNETQQGHTGA--HYLAAPNGTYWACNTGLTPCISMAVLNWTSDFCVLIEL 441

Query: 260 WPR 252
           WPR
Sbjct: 442 WPR 444

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>JDP_DROME (Q9TVP3) J domain-containing protein (dJDP)|
          Length = 195

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 283 AQADLQGLQAIRQALVDP--RGFLSGWNGTGLGACSGEWAGVKCARGKV 423
           A+A  Q L+  ++ L DP  R     W  +G+     +W G+K   G+V
Sbjct: 55  AEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHVGQV 103

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>HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-like protein 1|
          Length = 859

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 416 PRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSA 288
           P+    P   P+Q P P  + P RNP G++S  + +  P  SA
Sbjct: 701 PQQPPPPQPPPQQPPPPPSYSPARNPPGASSYNKNSNIPGSSA 743

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>ENV_FLVCA (Q02076) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E] (Fragment)
          Length = 410

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
 Frame = -1

Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261
           T+P+ H    +  +Q       H L  P G+  AC    +PC S   +   SD       
Sbjct: 324 TVPKTHQALCNETQQGHTGA--HYLAAPNGTYWACNTGLTPCISMAVLNWTSDFCVLIEL 381

Query: 260 WPR 252
           WPR
Sbjct: 382 WPR 384

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>HUNB_DROCY (O46238) Protein hunchback (Fragments)|
          Length = 198

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 22/76 (28%), Positives = 32/76 (42%)
 Frame = -1

Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGD 243
           TL  A +TP+ S      P+    L NP  S     +   PC +A   TTP+ A P    
Sbjct: 87  TLCAAAMTPSPSNNDQNSPLMPPGLPNPMQSIMPANLR--PCPTATTTTTPAAAAPTTTA 144

Query: 242 AECSRRTSSDSASVTP 195
           A    + +    ++TP
Sbjct: 145 ATIVLQANDKLQALTP 160

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>HXB13_MOUSE (P70321) Homeobox protein Hox-B13|
          Length = 286

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 19/70 (27%), Positives = 25/70 (35%)
 Frame = -1

Query: 431 SATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPR 252
           SA    + H  P      +P PVP+        S    R +  PC    A+ T     P 
Sbjct: 57  SAEPPKQCHPCPGVPQGASPAPVPYGYFGGGYYSCRVSRSSLKPCAQTAALATYPSETPA 116

Query: 251 AGDAECSRRT 222
            G+   SR T
Sbjct: 117 PGEEYPSRPT 126

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>ENV_RMCFV (P06445) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP70; Coat protein p12E; Spike protein
           p15E]
          Length = 640

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
 Frame = -1

Query: 341 PRGSTSACRMACSPCRSACAITTPSD------AWPRA---------GDAECSRRTSSDSA 207
           P G+T AC    +PC SA  +   +D       WPR             E S R   +  
Sbjct: 387 PAGTTWACNTGLTPCLSATVLNRTTDYCVLVELWPRVTYHPPSYVYSQFEKSYRHKREPV 446

Query: 206 SVTPLLLL 183
           S+T  LLL
Sbjct: 447 SLTLALLL 454

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>SYFA_CAUCR (Q9A9E4) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 357

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 277 VIAQADLQGLQAIRQALVDPRGFLSGWNGTGLGACSGE-----WAGVKCARGKV 423
           V A +DLQ L A+R A V   G +SG   T LGA S E      A +   R KV
Sbjct: 15  VAAASDLQALDAVRVAAVGKTGSISGLLKT-LGAMSPEERKTQGAAINALRDKV 67

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>ENV_MLVF5 (P03390) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E; R protein]
          Length = 675

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
 Frame = -1

Query: 341 PRGSTSACRMACSPCRSACAITTPSD------AWPRA---------GDAECSRRTSSDSA 207
           P G+T AC    +PC SA  +   +D       WPR             E S R   +  
Sbjct: 423 PTGTTWACNTGLTPCLSATVLNRTTDYCVLVELWPRVTYHPPSYVYSQFEKSYRHKREPV 482

Query: 206 SVTPLLLL 183
           S+T  LLL
Sbjct: 483 SLTLALLL 490

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>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional|
           corepressor Sin3a) (Histone deacetylase complex subunit
           Sin3a)
          Length = 1273

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 18/87 (20%), Positives = 35/87 (40%)
 Frame = -1

Query: 431 SATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPR 252
           + TT  + H  P H  +  P+P P HP   P   ++      +P      ++ PS     
Sbjct: 201 NVTTPGQVHQIPTHGIQPQPQPPPQHP-SQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAH 259

Query: 251 AGDAECSRRTSSDSASVTPLLLLHTPI 171
              ++ +      ++  +P +  HTP+
Sbjct: 260 TPASQQTPPLPPYASPRSPPVQPHTPV 286

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>ENV_MLVFF (P26804) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E; R protein]
          Length = 676

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
 Frame = -1

Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261
           T+P+ H    ++  +A +   +  L  P G+  AC    +PC SA  +   +D       
Sbjct: 398 TVPKTHQALCNTTLKAGKGSYY--LVAPTGTMWACNTGLTPCLSATVLNRTTDYCVLVEL 455

Query: 260 WPRA---------GDAECSRRTSSDSASVTPLLLL 183
           WPR             E S R   +  S+T  LLL
Sbjct: 456 WPRVTYHPPSYVYSQFEKSHRHKREPVSLTLALLL 490

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>KCNH2_CANFA (Q9TSZ3) Potassium voltage-gated channel subfamily H member 2|
           (Voltage-gated potassium channel subunit Kv11.1)
           (Ether-a-go-go-related gene potassium channel 1) (ERG1)
           (c-erg) (DERG) (Ether-a-go-go-related protein 1)
           (Eag-related protein 1)
          Length = 1158

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 398 PAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACA 282
           PA +PE  P P   H L NP  S S+C +A +  R +CA
Sbjct: 241 PAGAPEPLPSPRA-HSL-NPDASGSSCSLARTRSRESCA 277

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>E1A_ADE02 (P03254) Early E1A 32 kDa protein|
          Length = 289

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 386 PEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPS 267
           PE  P P P  P R P+   +  R   SP    C  +T S
Sbjct: 192 PEPEPEPEPARPTRRPKLVPAILRRPTSPVSRECNSSTDS 231

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>VSIG2_MOUSE (Q9Z109) V-set and immunoglobulin domain-containing protein 2|
           precursor (CT-like protein) (Cortical thymocyte-like
           protein)
          Length = 328

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -1

Query: 362 PFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGDA 240
           P HPL +  G TS    A   CRS+     P   W R G +
Sbjct: 146 PSHPLCSQSGQTSVGGSAALGCRSSEGAPKPVYNWERLGSS 186

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>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 277 VIAQADLQGLQAIRQALVDPRGFLSGWNGTGLGACSGEWAGVKC 408
           V   A+   L A++ +L DP   L  W+ T +  C+  W  V C
Sbjct: 23  VSGNAEGDALSALKNSLADPNKVLQSWDATLVTPCT--WFHVTC 64

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>TA29_TOBAC (P24804) Anther-specific protein TA-29|
          Length = 321

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 265 SDGVVIAQADLQGLQAIRQALVDPRGFLSGWNGTGLGACSGEWAG 399
           SD +   +AD   L+A   + +D +GF  G  G G+G   G WAG
Sbjct: 27  SDAIKAKEADHDNLKAHTLSNIDAKGF-GGGGGFGIG---GGWAG 67

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>CP306_DROME (Q9VWR5) Cytochrome P450 306a1 (EC 1.14.-.-) (CYPCCCVIA1) (Phantom|
           protein) (Dmphm)
          Length = 574

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = +3

Query: 57  VRGYIHRNCIASRVALGLDPGASGGSGRAWLAVT*YGTNGCVEEQ*WCHARAVTAGPPAA 236
           VR +  R+ +  R  L L  G  GG G             C +E  W HAR  T     A
Sbjct: 102 VRDFFRRDVMTGRAPLYLTHGIMGGFGII-----------CAQEDIWRHARRETIDWLKA 150

Query: 237 LGV 245
           LG+
Sbjct: 151 LGM 153

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>HNRL1_HUMAN (Q9BUJ2) Heterogeneous nuclear ribonucleoprotein U-like protein 1|
           (Adenovirus early region 1B-associated protein 5)
           (E1B-55 kDa-associated protein 5) (E1B-AP5)
          Length = 856

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 416 PRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSA 288
           P+    P   P+Q P P  + P RNP G+++  + +  P  SA
Sbjct: 698 PQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSSA 740

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>CS021_PONPY (Q5RBH3) Protein C19orf21 homolog|
          Length = 685

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 428 ATTLPRAHLTPAHSPEQAPRPVPF--HPLRNPRGSTSACR 315
           A T P+A ++P H  E + +P+     P + PRGS  A R
Sbjct: 463 AATSPKATMSPRHLSESSGKPMSTKQEPWKLPRGSPQANR 502

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>RADC_VIBVY (Q7MPS7) DNA repair protein radC homolog|
          Length = 224

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 354 PAQEPPRVDQRLPDGLQPLQVRLRDHHAVG 265
           P+Q   R+ +RL D L  + +R+ DH  VG
Sbjct: 182 PSQADRRITRRLSDALGLVDIRVLDHFVVG 211

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>RADC_VIBVU (Q8DDY0) DNA repair protein radC homolog|
          Length = 224

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 354 PAQEPPRVDQRLPDGLQPLQVRLRDHHAVG 265
           P+Q   R+ +RL D L  + +R+ DH  VG
Sbjct: 182 PSQADRRITRRLSDALGLVDIRVLDHFVVG 211

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>RADC_VIBCH (Q9KVC9) DNA repair protein radC homolog|
          Length = 224

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 354 PAQEPPRVDQRLPDGLQPLQVRLRDHHAVG 265
           P+Q   R+  RL D L  +++R+ DH  VG
Sbjct: 182 PSQADRRITDRLRDALGLVEIRVLDHFVVG 211

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>HXB13_HUMAN (Q92826) Homeobox protein Hox-B13|
          Length = 284

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 19/70 (27%), Positives = 25/70 (35%)
 Frame = -1

Query: 431 SATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPR 252
           SA    + H  P      +P PVP+        S    R +  PC  A  +       P 
Sbjct: 56  SAEPPKQCHPCPGVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAYPAETPT 115

Query: 251 AGDAECSRRT 222
           AG+   SR T
Sbjct: 116 AGEEYPSRPT 125

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>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response|
           factor 2) (ERF-2)
          Length = 492

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = -1

Query: 431 SATTLPRAHLTPA---HSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDA 261
           S +  P  H  P     SP     P    P      S S+C  + S C SA A +TPS A
Sbjct: 259 SFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGA 318

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>RHSD_ECOLI (P16919) Protein rhsD precursor|
          Length = 1426

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 328  VDPRGFLSGWNGTGLGACSGEWAGV 402
            +DP G L  W+    GAC+G   GV
Sbjct: 1253 IDPMGLLQTWDDARSGACTGGVCGV 1277

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>HUNB_DROSL (O46256) Protein hunchback (Fragments)|
          Length = 196

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = -1

Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGD 243
           TL  A +TP+ S      P+    L NP  S     +  SP  +A   TTP+ A P    
Sbjct: 85  TLCAAAMTPSSSNNDQNSPLMPPGLPNPMQSIMPANLRPSP--TATTTTTPAAAAPTTTA 142

Query: 242 AECSRRTSSDSASVTP 195
           A  + + +    ++TP
Sbjct: 143 ATIALQANDKLQALTP 158

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>ENV_FLVSA (P06752) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 639

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
 Frame = -1

Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261
           T+P+ H       ++  +    H L  P G+  AC    +PC S   +   SD       
Sbjct: 361 TVPKTHQALCKKTQKGHKGT--HYLAAPNGTYWACNTGLTPCISMAVLNWTSDFCVLIEL 418

Query: 260 WPR 252
           WPR
Sbjct: 419 WPR 421

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>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 870

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = -1

Query: 404 LTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGDAECSRR 225
           +TP  SP+   RP P  P  +P  +  A R++ S   SA    TPS   P       S  
Sbjct: 476 ITPTSSPKTKKRPAPRAPSASPL-AIHASRLSHSEPPSA----TPS---PALSVESLSSE 527

Query: 224 TSSDSASVTPL 192
           +SS +A+  PL
Sbjct: 528 SSSHTANAEPL 538


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,687,512
Number of Sequences: 219361
Number of extensions: 816466
Number of successful extensions: 3156
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3139
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result