>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)|
          Length = 859

 Score =  139 bits (350), Expect = 4e-33
 Identities = 67/82 (81%), Positives = 70/82 (85%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           LY ELWHACAGPLVTVP   D VFYFPQGHIEQVEAS NQ A  QM LYDLP KLLCRVI
Sbjct: 58  LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVI 117

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
           NV+LKAEADTDEVYAQ+ L+PE
Sbjct: 118 NVDLKAEADTDEVYAQITLLPE 139

>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score =  115 bits (288), Expect = 6e-26
 Identities = 51/84 (60%), Positives = 68/84 (80%)
 Frame = +1

Query: 223 DPLYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCR 402
           D L  ELWHACAGPLVT+P  G+ V+YFP+GH+EQ+EASM+Q    QM  ++LP K+LC+
Sbjct: 17  DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 76

Query: 403 VINVELKAEADTDEVYAQVMLMPE 474
           VIN++ +AE +TDEVYAQ+ L+PE
Sbjct: 77  VINIQRRAEPETDEVYAQITLLPE 100

>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score =  115 bits (287), Expect = 8e-26
 Identities = 55/88 (62%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
 Frame = +1

Query: 214 SAGDPLYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQ-VAGNQMRLYDLPPK 390
           S  D LY ELW ACAGPLV VP  G+ VFYFPQGH+EQ+ AS NQ V   ++ +++LPPK
Sbjct: 13  SNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPK 72

Query: 391 LLCRVINVELKAEADTDEVYAQVMLMPE 474
           +LCRV++V LKAE +TDEVYAQ+ L PE
Sbjct: 73  ILCRVLSVTLKAEHETDEVYAQITLQPE 100

>ARFI_ARATH (Q9XED8) Auxin response factor 9|
          Length = 638

 Score =  112 bits (281), Expect = 4e-25
 Identities = 54/85 (63%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
 Frame = +1

Query: 220 GDPLYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMR-LYDLPPKLL 396
           G+ LYDELW  CAGPLV VP   + V+YFPQGH+EQ+EAS  QV  N M+ L+ LPPK+L
Sbjct: 6   GEYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKIL 65

Query: 397 CRVINVELKAEADTDEVYAQVMLMP 471
           C V+NV L+AE DTDEVYAQ+ L+P
Sbjct: 66  CNVMNVSLQAEKDTDEVYAQITLIP 90

>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score =  111 bits (278), Expect = 9e-25
 Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
 Frame = +1

Query: 223 DPLYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQ-VAGNQMRLYDLPPKLLC 399
           D LY ELW  CAGPLV VP   + VFYFPQGH+EQ+ AS NQ +   ++ ++DLPPK+LC
Sbjct: 20  DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILC 79

Query: 400 RVINVELKAEADTDEVYAQVMLMPE 474
           RV++V LKAE +TDEVYAQ+ L PE
Sbjct: 80  RVLDVTLKAEHETDEVYAQITLQPE 104

>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 43/81 (53%), Positives = 61/81 (75%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y ELWHACAGPL  +P  G++V YFPQGH+EQ +A ++  +  ++  +DL P+++CRV+
Sbjct: 62  IYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ-DAMVSYSSPLEIPKFDLNPQIVCRVV 120

Query: 409 NVELKAEADTDEVYAQVMLMP 471
           NV+L A  DTDEVY QV L+P
Sbjct: 121 NVQLLANKDTDEVYTQVTLLP 141

>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14|
          Length = 605

 Score = 95.5 bits (236), Expect = 6e-20
 Identities = 41/82 (50%), Positives = 57/82 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P +G+ V+YFPQGHIE VEAS  +       + D P KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            ++LK E ++DE YA++ LMP+
Sbjct: 84  AIQLKVENNSDETYAEITLMPD 105

>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)|
          Length = 608

 Score = 95.1 bits (235), Expect = 8e-20
 Identities = 46/87 (52%), Positives = 58/87 (66%)
 Frame = +1

Query: 214 SAGDPLYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKL 393
           SAG  +  ELWHACAGPL+++P  G LV YFPQGH+E       Q       +Y LPP +
Sbjct: 46  SAGGGVCLELWHACAGPLISLPKRGSLVLYFPQGHLE-------QAPDFSAAIYGLPPHV 98

Query: 394 LCRVINVELKAEADTDEVYAQVMLMPE 474
            CR+++V+L AE  TDEVYAQV L+PE
Sbjct: 99  FCRILDVKLHAETTTDEVYAQVSLLPE 125

>ARFM_ARATH (Q9FX25) Putative auxin response factor 13|
          Length = 623

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 40/82 (48%), Positives = 58/82 (70%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW+ CAGPL  +P  G+ V+YFPQGHIE +E S      +   ++DLP KL CRV+
Sbjct: 24  MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVV 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            ++ K + +TDEVYAQ+ LMP+
Sbjct: 84  AIDRKVDKNTDEVYAQISLMPD 105

>ARFL_ARATH (Q9XID4) Putative auxin response factor 12|
          Length = 593

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 41/82 (50%), Positives = 56/82 (68%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P +G+ V+YFPQGHIE VE S  +       + DLP KL CRVI
Sbjct: 24  VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            + LK E ++DE YA++ LMP+
Sbjct: 84  AIHLKVENNSDETYAEITLMPD 105

>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 45/82 (54%), Positives = 57/82 (69%)
 Frame = +1

Query: 226 PLYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRV 405
           P+  +LWHACAGPLV++P VG LV YFPQGH EQV ASM +         +LP KL+C +
Sbjct: 19  PINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICLL 78

Query: 406 INVELKAEADTDEVYAQVMLMP 471
            +V L A+ +TDEVYAQ+ L P
Sbjct: 79  HSVTLHADTETDEVYAQMTLQP 100

>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22|
          Length = 598

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 40/82 (48%), Positives = 58/82 (70%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P +G+ ++YFPQG+IE VEAS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            ++LK E ++DE YA++ LMP+
Sbjct: 84  AIQLKVENNSDETYAEITLMPD 105

>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)|
           (Auxin-responsive protein IAA24)
          Length = 902

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 45/79 (56%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLY-DLPPKLLCRVINV 414
           ELWHACAGPLV +P VG LV+YF QGH EQV  S  + A  Q+  Y +LP +L+C+V NV
Sbjct: 54  ELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNV 113

Query: 415 ELKAEADTDEVYAQVMLMP 471
            L A+ D+DE+YAQ+ L P
Sbjct: 114 TLHADKDSDEIYAQMSLQP 132

>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21|
          Length = 606

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 40/82 (48%), Positives = 58/82 (70%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P +G+ V+YFPQG+IE V+AS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            + LK E ++DE+YA++ LMP+
Sbjct: 84  AIHLKVENNSDEIYAEITLMPD 105

>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15|
          Length = 593

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 41/82 (50%), Positives = 57/82 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P +G+ V+YFPQG+IE VEAS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            + LK E ++DE YA++ LMP+
Sbjct: 84  AIHLKVENNSDETYAKITLMPD 105

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMN-QVAGNQMRLYDLPPKLLCRV 405
           L  ELWHACAGPLV++P  G  V YFPQGH EQV A+ N +V G+      LPP+L+C++
Sbjct: 19  LNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQL 78

Query: 406 INVELKAEADTDEVYAQVMLMP 471
            NV + A+ +TDEVYAQ+ L P
Sbjct: 79  HNVTMHADVETDEVYAQMTLQP 100

>ARFW_ARATH (Q9LP07) Putative auxin response factor 23|
          Length = 222

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 41/82 (50%), Positives = 55/82 (67%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P +G+ V+YFPQGHIE VEAS  +         DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            + LK E ++DE Y ++ LMP+
Sbjct: 84  AIHLKVENNSDETYVEITLMPD 105

>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 44/78 (56%), Positives = 54/78 (69%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINVE 417
           ELWHACAGPL+++P  G LV YFPQGH EQV ASM +         +LP KL+C + NV 
Sbjct: 24  ELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVT 83

Query: 418 LKAEADTDEVYAQVMLMP 471
           L A+ +TDEVYAQ+ L P
Sbjct: 84  LNADPETDEVYAQMTLQP 101

>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20|
          Length = 606

 Score = 92.0 bits (227), Expect = 7e-19
 Identities = 40/82 (48%), Positives = 57/82 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P +G+ V+YFPQG+IE V+AS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            + LK E ++DE YA++ LMP+
Sbjct: 84  AIHLKVENNSDETYAEITLMPD 105

>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 45/82 (54%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLY-DLPPKLLCRV 405
           L  ELWHACAGPLV++P VG  V YFPQGH EQV AS N+     +  Y  L P+L+C++
Sbjct: 20  LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQL 79

Query: 406 INVELKAEADTDEVYAQVMLMP 471
            NV + A+ +TDEVYAQ+ L P
Sbjct: 80  HNVTMHADVETDEVYAQMTLQP 101

>ARFJ_ARATH (Q9SKN5) Auxin response factor 10|
          Length = 693

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 36/80 (45%), Positives = 52/80 (65%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINVE 417
           +LWHACAG +V +P +   VFYF QGH E   A  +  A        +PP +LCRV++V+
Sbjct: 10  QLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHAPR------VPPLILCRVVSVK 63

Query: 418 LKAEADTDEVYAQVMLMPEP 477
             A+A+TDEV+A++ L+P P
Sbjct: 64  FLADAETDEVFAKITLLPLP 83

>ARFP_ARATH (Q93YR9) Auxin response factor 16|
          Length = 670

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 34/78 (43%), Positives = 52/78 (66%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINVE 417
           +LWHACAG +V +P +   VFYFPQGH E     ++   GN      +PP +LCRV+ ++
Sbjct: 19  QLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVD--FGN----LPIPPMVLCRVLAIK 72

Query: 418 LKAEADTDEVYAQVMLMP 471
             A+A++DEV+A++ L+P
Sbjct: 73  YMADAESDEVFAKLRLIP 90

>ARFQ_ARATH (Q84WU6) Auxin response factor 17|
          Length = 585

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
 Frame = +1

Query: 214 SAGDPLYDE----LWHACAGPLVTVPHVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDL 381
           +AGD  + E    +W ACAG  V +P +   V+YFPQGH+E     ++ +  +       
Sbjct: 7   TAGDINHREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSS------- 59

Query: 382 PPKLLCRVINVELKAEADTDEVYAQVMLMP 471
              + C + +++L A+  TDEV+A ++L P
Sbjct: 60  TSPVPCIITSIQLLADPVTDEVFAHLILQP 89

>HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog (Light-ear|
           protein) (Le protein)
          Length = 671

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 286 GDLVFYFPQGHIEQVEASMNQVAGNQMRLYDL--PPKLLCRVINVELKAEADTDEVYA 453
           G   FY PQ  ++Q E    Q+AG    L+DL   P +L R+ N++    AD D ++A
Sbjct: 36  GICYFYPPQTLLDQQELLCGQLAGVVRCLWDLSGTPPMLIRMRNLKFAIRADGDYLWA 93

>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2304

 Score = 32.0 bits (71), Expect = 0.87
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 274  VPHVGDLVFYFPQGHIEQVEA 336
            VP +GD V YFPQGH   +EA
Sbjct: 959  VPQMGDEVIYFPQGHEAYIEA 979

>BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2320

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 274  VPHVGDLVFYFPQGHIEQVEA 336
            VP +GD V YF QGH   +EA
Sbjct: 958  VPQMGDEVIYFRQGHEAYIEA 978

>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)|
            [Includes: ATP-dependent asparagine adenylase (AsnA)
            (Asparagine activase); ATP-dependent glutamine adenylase
            (GlnA) (Glutamine activase); ATP-dependent tyrosine
            adenylase (TyrA) (Ty
          Length = 6486

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 271  TVPHVGDLVFYFPQGHIEQVEASMNQV--AGNQMRLYDLPPKLL 396
            T+   GD+V Y P GHIE +    +QV   G+++ L ++   LL
Sbjct: 1871 TMYRTGDMVRYLPDGHIEYLGRIDHQVKIRGHRIELGEIEATLL 1914


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,325,264
Number of Sequences: 219361
Number of extensions: 305881
Number of successful extensions: 1194
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)