>IKKB_MOUSE (O88351) Inhibitor of nuclear factor kappa B kinase beta subunit|
           (EC 2.7.11.10) (I-kappa-B-kinase beta) (IkBKB)
           (IKK-beta) (IKK-B) (I-kappa-B kinase 2) (IKK2) (Nuclear
           factor NF-kappa-B inhibitor kinase beta) (NFKBIKB)
          Length = 757

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -2

Query: 279 ENQFTARPTPSSVLCCLCLRPKTVADFVQLRR 184
           E Q T RP P SV C L   PK    F QLR+
Sbjct: 398 ETQITPRPPPESVSCIL-QEPKRNLSFFQLRK 428

>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
 Frame = -2

Query: 456 HGTCTLSVIEEYLGLEG--------GPPFSRKSDHHSNT--PRFTGKDRTM 334
           H TC+LSV  +YL L+G         P  S +  H +N   PR TG   +M
Sbjct: 28  HCTCSLSVSRQYLALDGIYHPLRAAFPNNSTRRKHFTNNWDPRHTGFSPSM 78

>IKKB_RAT (Q9QY78) Inhibitor of nuclear factor kappa B kinase beta subunit|
           (EC 2.7.11.1) (I-kappa-B-kinase beta) (IkBKB) (IKK-beta)
           (IKK-B) (I-kappa-B kinase 2) (IKK2) (Nuclear factor
           NF-kappa-B inhibitor kinase beta) (NFKBIKB)
          Length = 757

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 279 ENQFTARPTPSSVLCCLCLRPKTVADFVQLRR 184
           E Q T RP P SV C L   PK    F Q+R+
Sbjct: 398 ETQITPRPQPESVSCVL-QEPKRNLSFFQMRK 428

>CED4_CAEEL (P30429) Cell death protein 4|
          Length = 571

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 225 LRPKTVADFVQLRRARYGNFSNYACC 148
           +RP+    F+QL +  Y +  N+ACC
Sbjct: 546 IRPEDFPKFMQLHQKFYDSLKNFACC 571


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,297,460
Number of Sequences: 219361
Number of extensions: 1375982
Number of successful extensions: 3193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3190
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)