ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05f06 |
|---|---|
| Clone Library Name | barley_pub |
>GAG_MLVDU (P23090) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 528 Score = 32.3 bits (72), Expect = 0.44 Identities = 22/80 (27%), Positives = 33/80 (41%) Frame = +2 Query: 74 PPSHASAIDAVAHELPQIWPIHPQIWVRNAPPDLTNPPPNLG*KR*RVRARSEAPSFY*D 253 PP+ ID + LP + P+ + PP PPN RVR R + P+ D Sbjct: 143 PPNGGPLIDLLTENLPNLPPLSKGPVKKRRPPPPRYSPPNP--MESRVRGRRDPPAA--D 198 Query: 254 HTRTHLFPPSIRLNSTFSFW 313 T + FP + + +W Sbjct: 199 STSSQAFPLRMGGDGQLQYW 218
>AKT3_RAT (Q63484) RAC-gamma serine/threonine-protein kinase (EC 2.7.11.1)| (RAC-PK-gamma) (Protein kinase Akt-3) (Protein kinase B, gamma) (PKB gamma) Length = 454 Score = 32.0 bits (71), Expect = 0.58 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +3 Query: 195 WVRNGEEFGHDLKHHRFTKTTRARIYSPPLSVSILLFRSGRLIRTDLQVADLPV*EPGHF 374 +V GE F H L R R R Y + ++ SG+++ DL++ +L + + GH Sbjct: 227 YVNGGELFFH-LSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHI 285 Query: 375 ---DFG 383 DFG Sbjct: 286 KITDFG 291
>AKT3_MOUSE (Q9WUA6) RAC-gamma serine/threonine-protein kinase (EC 2.7.11.1)| (RAC-PK-gamma) (Protein kinase Akt-3) (Protein kinase B, gamma) (PKB gamma) Length = 479 Score = 32.0 bits (71), Expect = 0.58 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +3 Query: 195 WVRNGEEFGHDLKHHRFTKTTRARIYSPPLSVSILLFRSGRLIRTDLQVADLPV*EPGHF 374 +V GE F H L R R R Y + ++ SG+++ DL++ +L + + GH Sbjct: 227 YVNGGELFFH-LSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHI 285 Query: 375 ---DFG 383 DFG Sbjct: 286 KITDFG 291
>AKT3_HUMAN (Q9Y243) RAC-gamma serine/threonine-protein kinase (EC 2.7.11.1)| (RAC-PK-gamma) (Protein kinase Akt-3) (Protein kinase B, gamma) (PKB gamma) (STK-2) Length = 479 Score = 32.0 bits (71), Expect = 0.58 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +3 Query: 195 WVRNGEEFGHDLKHHRFTKTTRARIYSPPLSVSILLFRSGRLIRTDLQVADLPV*EPGHF 374 +V GE F H L R R R Y + ++ SG+++ DL++ +L + + GH Sbjct: 227 YVNGGELFFH-LSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHI 285 Query: 375 ---DFG 383 DFG Sbjct: 286 KITDFG 291
>IRX1_MOUSE (P81068) Iroquois-class homeodomain protein IRX-1 (Iroquois| homeobox protein 1) (Homeodomain protein IRXA1) Length = 480 Score = 31.6 bits (70), Expect = 0.76 Identities = 15/57 (26%), Positives = 25/57 (43%) Frame = +2 Query: 23 LDRIRRLGFQASPRLLHPPSHASAIDAVAHELPQIWPIHPQIWVRNAPPDLTNPPPN 193 L ++ + S RLL P + A + H P+IW + + P + PPP+ Sbjct: 282 LGLVKEVSEPGSTRLLSPGAAAVGLQGAPHSKPKIWSLAETATSPDGAPKASPPPPS 338
>HOB1_SCHPO (O74352) Protein hob1 (Homolog of Bin1)| Length = 466 Score = 31.2 bits (69), Expect = 0.99 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = +1 Query: 106 SARTPPDLANPPPNLG*KRSPRSDQSTPKSGLETVKSSGTI*STIVLLRPHAHASIPPLY 285 S+ T D+ PPP + SD STP +G +TV+++ T P A PP+ Sbjct: 314 SSSTATDI--PPPYSTPSVAGASDYSTPSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVM 371 Query: 286 P 288 P Sbjct: 372 P 372
>IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS)| Length = 1321 Score = 31.2 bits (69), Expect = 0.99 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Frame = +1 Query: 157 KRSPRSDQ-----STPKSGLETVKSSGTI*STIVLLRPHAHASIPPLYP 288 +RSP SD S+PKS + +S T+ S LL P A + PPL P Sbjct: 963 QRSPLSDYMNLDPSSPKSPKPSTRSGDTVGSMDGLLSPEASSPYPPLPP 1011
>SGK2_RAT (Q8R4U9) Serine/threonine-protein kinase Sgk2 (EC 2.7.11.1)| (Serum/glucocorticoid-regulated kinase 2) (Fragment) Length = 302 Score = 30.4 bits (67), Expect = 1.7 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = +3 Query: 195 WVRNGEEFGHDLKHHRFTKTTRARIYSPPLSVSILLFRSGRLIRTDLQVADLPV*EPGHF 374 +V GE F H + HRF + RAR Y+ ++ +I S +I DL+ ++ + GH Sbjct: 98 YVNGGELFFHLQREHRFLEP-RARFYTAEVASAIGYLHSLNIIYRDLKPENILLDCQGHV 156 Query: 375 ---DFG 383 DFG Sbjct: 157 VLTDFG 162
>IRX1_HUMAN (P78414) Iroquois-class homeodomain protein IRX-1 (Iroquois| homeobox protein 1) (Homeodomain protein IRXA1) Length = 480 Score = 30.0 bits (66), Expect = 2.2 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = +2 Query: 56 SPRLLHPPSHASAIDAVAHELPQIWPIHPQIWVRNAPPDLTNPPP 190 S RLL P + A + H P+IW + + P + PPP Sbjct: 293 STRLLSPGAAAGGLQGAPHGKPKIWSLAETATSPDGAPKASPPPP 337
>SCMH1_HUMAN (Q96GD3) Polycomb protein SCMH1 (Sex comb on midleg homolog 1)| Length = 660 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +1 Query: 103 GSARTPPDLANPPPNLG*KRSPRSDQSTPKSGLETVKSS 219 GS R P L NPPP +P D ST T+ SS Sbjct: 314 GSKRKPRTLLNPPPASPTTSTPEPDTSTVPQDAATIPSS 352
>AKT1_DROME (Q8INB9) RAC serine/threonine-protein kinase (EC 2.7.11.1)| (DRAC-PK) (Akt) (Dakt1) (Protein kinase B) (PKB) Length = 611 Score = 28.9 bits (63), Expect = 4.9 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = +3 Query: 204 NGEEFGHDLKHHRFTKTTRARIYSPPLSVSILLFRSGRLIRTDLQVADLPV*EPGHF--- 374 NG E L H R R R Y + ++ S +I DL++ +L + + GH Sbjct: 347 NGGELFWHLSHERIFTEDRTRFYGAEIISALGYLHSQGIIYRDLKLENLLLDKDGHIKVA 406 Query: 375 DFG 383 DFG Sbjct: 407 DFG 409
>CUTL1_CANFA (P39881) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) (Homeobox protein Clox) (Clox-1) (Fragment) Length = 975 Score = 28.9 bits (63), Expect = 4.9 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Frame = +1 Query: 163 SPRSDQS-----TPKSGLETVKSSGTI*STIVLLRPHAHASIPPLYPSQFYFFV 309 SPR+ QS T S ET ++S S IV + A S+PPL P Q+ ++ Sbjct: 326 SPRTPQSSELSLTGASRSETPQNSPLPSSPIVPMSKPAKPSVPPLTPEQYEIYM 379
>SGK1_RABIT (Q9XT18) Serine/threonine-protein kinase Sgk1 (EC 2.7.11.1)| (Serum/glucocorticoid-regulated kinase 1) Length = 431 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +3 Query: 204 NGEEFGHDLKHHRFTKTTRARIYSPPLSVSILLFRSGRLIRTDLQVADLPV*EPGHF--- 374 NG E + L+ R RAR Y+ ++ ++ S ++ DL+ ++ + GH Sbjct: 180 NGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLT 239 Query: 375 DFGRVERN 398 DFG + N Sbjct: 240 DFGLCKEN 247
>SGK1_MOUSE (Q9WVC6) Serine/threonine-protein kinase Sgk1 (EC 2.7.11.1)| (Serum/glucocorticoid-regulated kinase 1) Length = 431 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +3 Query: 204 NGEEFGHDLKHHRFTKTTRARIYSPPLSVSILLFRSGRLIRTDLQVADLPV*EPGHF--- 374 NG E + L+ R RAR Y+ ++ ++ S ++ DL+ ++ + GH Sbjct: 180 NGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLT 239 Query: 375 DFGRVERN 398 DFG + N Sbjct: 240 DFGLCKEN 247
>SGK1_HUMAN (O00141) Serine/threonine-protein kinase Sgk1 (EC 2.7.11.1)| (Serum/glucocorticoid-regulated kinase 1) Length = 431 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +3 Query: 204 NGEEFGHDLKHHRFTKTTRARIYSPPLSVSILLFRSGRLIRTDLQVADLPV*EPGHF--- 374 NG E + L+ R RAR Y+ ++ ++ S ++ DL+ ++ + GH Sbjct: 180 NGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLT 239 Query: 375 DFGRVERN 398 DFG + N Sbjct: 240 DFGLCKEN 247
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/49 (36%), Positives = 21/49 (42%) Frame = +2 Query: 44 GFQASPRLLHPPSHASAIDAVAHELPQIWPIHPQIWVRNAPPDLTNPPP 190 G Q SP PP A + + LP P HP R +PP PPP Sbjct: 1023 GDQESPEACLPPEPPEASAPLQNPLPSQSPKHPAPQSRLSPP----PPP 1067
>SGK1_RAT (Q06226) Serine/threonine-protein kinase Sgk1 (EC 2.7.11.1)| (Serum/glucocorticoid-regulated kinase 1) Length = 430 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +3 Query: 204 NGEEFGHDLKHHRFTKTTRARIYSPPLSVSILLFRSGRLIRTDLQVADLPV*EPGHF--- 374 NG E + L+ R RAR Y+ ++ ++ S ++ DL+ ++ + GH Sbjct: 180 NGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLT 239 Query: 375 DFGRVERN 398 DFG + N Sbjct: 240 DFGLCKEN 247
>MECT1_MOUSE (Q68ED7) Mucoepidermoid carcinoma translocated protein 1 homolog| Length = 630 Score = 28.1 bits (61), Expect = 8.3 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Frame = +2 Query: 17 LSLDRIRRLGFQASPRL--LHPPSHASAIDAVAHELPQIWPIHPQIWVRNAPPDLTNPPP 190 LS + R+ Q SP L L P + A A+DA++ E + Q + PP PPP Sbjct: 312 LSTEARRQQAQQVSPTLSPLSPITQAVAMDALSLEQQLPYAFFTQTGSQQPPPQPQPPPP 371
>YHZ8_YEAST (P38884) Hypothetical 36.5 kDa protein in EGD2-SUN1 intergenic| region Length = 321 Score = 28.1 bits (61), Expect = 8.3 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +1 Query: 328 RICKLQIYLCENQATLISDASNETF 402 ++ L +YL EN L+SD NET+ Sbjct: 131 KVYALGLYLAENDENLVSDTLNETY 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,819,393 Number of Sequences: 219361 Number of extensions: 1264444 Number of successful extensions: 3438 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3172 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3430 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
