ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05f05 |
|---|---|
| Clone Library Name | barley_pub |
>CEA20_HUMAN (Q6UY09) Carcinoembryonic antigen-related cell adhesion molecule 20| precursor Length = 585 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = +1 Query: 19 LPHDDRRGRLASPWRAPPDRAGPAMVHSAYDAVELVSGVPGRIEAV 156 LP RRG SPW+ PP P + LVS VP +E++ Sbjct: 540 LPSASRRGNSFSPWKPPPKPLMPPL--------RLVSTVPKNMESI 577
>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)| Length = 825 Score = 30.0 bits (66), Expect = 2.5 Identities = 21/62 (33%), Positives = 23/62 (37%) Frame = -3 Query: 251 PLRISPSAGGGAE*MRSEQSEAATRSFPAWEATASMRPGTPETSSTASYALCTMAGPARS 72 P R GGGA R AATR P PG P +SS+ L G Sbjct: 259 PRRAPRRGGGGAGATRGTSQPAATRPAP---------PGAPRSSSSGGAPLRAGVGSGSG 309 Query: 71 GG 66 GG Sbjct: 310 GG 311
>GR65_MOUSE (Q91X51) Golgi reassembly-stacking protein 1 (Golgi| reassembly-stacking protein of 65 kDa) (GRASP65) (Golgi peripheral membrane protein p65) Length = 445 Score = 30.0 bits (66), Expect = 2.5 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%) Frame = +1 Query: 55 PWRAPPDRAGPAMVHSAYDAVELVSGVPGR-IEAVASHAGKLLVAASDC-----SLRIYS 216 PW P D +GP + D +E + VPG +E G A+DC ++ I Sbjct: 236 PWPIPQDSSGPELGSRQSDFMEALPQVPGSFMEGQLLGPGSPSHGAADCGGCLRAMEIPL 295 Query: 217 APPP 228 PPP Sbjct: 296 QPPP 299
>CARB_XANAC (P58942) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1080 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = +1 Query: 109 DAVELVSGVPGRIEAVASHAGKLLVAASDCSLRIYSAPPPADGEIRR 249 D L+ GV IE H+G S CSL YS P E+RR Sbjct: 771 DGNVLIGGVMEHIEEAGVHSGD-----SSCSLPPYSLSPQTQAELRR 812
>VPS39_MOUSE (Q8R5L3) Vam6/Vps39-like protein (Vps39 protein)| Length = 886 Score = 30.0 bits (66), Expect = 2.5 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 8/120 (6%) Frame = +1 Query: 94 VHSAYDAVELVSGVPGRIEAVASHAGKLLVAASDCSLRIYSAPP---PADGEIRRGG--- 255 +H A++ V ++ +P +I+ +A+ LLV L +Y PAD G Sbjct: 1 MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN 60 Query: 256 --PYALERQEQRLWRRAPSAMEXXXXXXXXXXXXEWVALHRLPGLETVAVVSKTKGANVF 429 LE+ + ++ + +H L + + VSK KGA++F Sbjct: 61 RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF 120
>VPS39_HUMAN (Q96JC1) Vam6/Vps39-like protein (hVam6p)| Length = 886 Score = 30.0 bits (66), Expect = 2.5 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 8/120 (6%) Frame = +1 Query: 94 VHSAYDAVELVSGVPGRIEAVASHAGKLLVAASDCSLRIYSAPP---PADGEIRRGG--- 255 +H A++ V ++ +P +I+ +A+ LLV L +Y PAD G Sbjct: 1 MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN 60 Query: 256 --PYALERQEQRLWRRAPSAMEXXXXXXXXXXXXEWVALHRLPGLETVAVVSKTKGANVF 429 LE+ + ++ + +H L + + VSK KGA++F Sbjct: 61 RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF 120
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 29.6 bits (65), Expect = 3.3 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = -3 Query: 269 SSA*GPPLRISPSAGGGAE*MRSEQSEAATRSFPAWEATASMRPGTPETSS 117 SSA GPP+R S+ + S S AAT +PA + S P +S Sbjct: 365 SSAPGPPMRYPYSSCSSSSVAASSSSSAATSQYPASQTLPSYPHSFPPPTS 415
>PGCA_HUMAN (P16112) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) (Chondroitin sulfate proteoglycan core protein 1) [Contains: Aggrecan core protein 2] Length = 2415 Score = 29.6 bits (65), Expect = 3.3 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +1 Query: 28 DDRRGRLASPWRAPPDRAGPAMVHSAYDAVELVSGVPGR 144 ++ G PW P GPA ++ D V V+ VPG+ Sbjct: 433 ENETGEATRPWGFPTPGLGPATAFTSEDLVVQVTAVPGQ 471
>FMT_CAUCR (Q9ABE9) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 308 Score = 29.3 bits (64), Expect = 4.3 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 4/73 (5%) Frame = +1 Query: 31 DRRGRLASP----WRAPPDRAGPAMVHSAYDAVELVSGVPGRIEAVASHAGKLLVAASDC 198 DR R SP W P GP V + VE SGV G + LL+A + Sbjct: 221 DRHIRGLSPFPGAWFEAPSEKGPVRVKALLSRVEAASGVAG-----TTLDDALLIACGEG 275 Query: 199 SLRIYSAPPPADG 237 S+R+ A G Sbjct: 276 SIRLLKAQREGKG 288
>EPAS1_RAT (Q9JHS1) Endothelial PAS domain-containing protein 1 (EPAS-1)| (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) Length = 874 Score = 29.3 bits (64), Expect = 4.3 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -3 Query: 242 ISPSAGGGAE*MRSEQSEAATRSFPAWEATASMRPGTPETSSTASYALCTMAGP 81 I P A +RS +++ +RS PA+ + PG S+T+S + T + P Sbjct: 431 ILPPGQPWATELRSHSAQSESRSLPAFTVPQAGSPGNATPSATSSSSCSTPSSP 484
>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21| Length = 1629 Score = 28.9 bits (63), Expect = 5.7 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -3 Query: 200 EQSEAATRSFPAWEATASMRPGTPETSSTASYALCTMAGPARSGGAL 60 +QS A+ S + A S RP TPETS+ ++ + PA++ A+ Sbjct: 214 QQSNRASLSTKSDAAATSTRPNTPETSTESATTANPVPPPAKNTQAV 260
>RGS20_HUMAN (O76081) Regulator of G-protein signaling 20 (RGS20) (Regulator of| Gz-selective protein signaling 1) (Gz-selective GTPase-activating protein) (G(z)GAP) Length = 388 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = -3 Query: 209 MRSEQSEAATRSFPAWEATASMRPGTPETSSTASYALC 96 M SE+ E R PA + T PG P S S A C Sbjct: 172 MGSERMEMRKRQMPAAQDTPGAAPGQPGAGSRGSNACC 209
>CARB_HAEDU (Q7VP67) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1075 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = +1 Query: 121 LVSGVPGRIEAVASHAGKLLVAASDCSLRIYSAPPPADGEIRR 249 L+ G+ +E H+G S CSL YS GEIRR Sbjct: 768 LIGGIMQHVEQAGIHSGD-----SACSLPAYSLTNEVQGEIRR 805
>PTC1_MOUSE (Q61115) Protein patched homolog 1 (PTC1) (PTC)| Length = 1434 Score = 28.5 bits (62), Expect = 7.4 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Frame = +1 Query: 73 DRAGP--AMVHSAYDAVELVSGVPGRIEAVASHAGKLLVAASDCSLRIYSAPPPADGEIR 246 DR+GP A H+ + G +V S+ + + S+ + PPP G Sbjct: 1323 DRSGPRGARSHNPRNPTSTAMG-----SSVPSYCQPITTVTASASVTVAVHPPPGPGRNP 1377 Query: 247 RGGP 258 RGGP Sbjct: 1378 RGGP 1381
>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1687 Score = 28.5 bits (62), Expect = 7.4 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%) Frame = -3 Query: 302 GARRQRRCSWRSSA*GPPLRISPSAGGGAE-------*MRSEQSEAATRSFPAWEATASM 144 G RR+R ++ P+ P+AGGGA ++ S AA S + ++AS Sbjct: 71 GRRRRRGAPQPAAGGAAPV---PAAGGGANSLLLKRGRLKRNLSAAAAASSSSSPSSASS 127 Query: 143 RPGTPETSSTASYALCT 93 G S +AS +LCT Sbjct: 128 AAGGLPASCSASASLCT 144
>YEHM_ECOLI (P33349) Hypothetical protein yehM| Length = 759 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -3 Query: 152 ASMRPGTPETSSTASYALCTMAGPARSGGALHG 54 A MR P S+ A+ + PA+SG ALHG Sbjct: 623 ALMRLEHPNASAEAALTMLAQLSPAQSGEALHG 655 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,439,055 Number of Sequences: 219361 Number of extensions: 561645 Number of successful extensions: 2284 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2279 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
