ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05f05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 242 bits (122), Expect = 8e-61 Identities = 295/352 (83%), Gaps = 3/352 (0%) Strand = Plus / Minus Query: 88 gccatggtgcacagcgcgtatgacgccgtcgagctggtctccggcgtgcccggccgcatc 147 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| Sbjct: 28680184 gccatggtgcacagcgcgtacgacgccgtcgagctggtctccggcgtgccgggcgacatc 28680125 Query: 148 gaggccgtcgcctcccacgccgggaagctcctcgtcgcggcctccgactgctcgctccgc 207 | |||||| ||| || ||||||||| |||||||||||||| ||| |||| |||||| Sbjct: 28680124 gtggccgtggccgcctacgccgggaggctcctcgtcgcggggaaggacggctccctccgc 28680065 Query: 208 atctactccgcgccgccccccgccgacggcgagatccggaggggcgggccctacgcgctc 267 |||||| || | ||| || ||||| ||||| ||||| | ||| |||||| |||||||| Sbjct: 28680064 atctacgcctccccgggccacgccggcggcgggatcccgcgggacgggccgtacgcgctg 28680005 Query: 268 gagcgccaggagcagcgcctctggcgccgcg---cgccctccgccatggaggccagcgcc 324 ||||| ||| ||| || |||||||||| ||||| || ||||||| ||||||| Sbjct: 28680004 gagcggcagcagccctcgctgtggcgccgcgggacgcccctggcgatggaggtcagcgcc 28679945 Query: 325 agccgcgacctcctgctctcgctctccgagtgggtcgccctccaccgcctcccggggctc 384 ||||||| ||||||||||||||| ||||||| ||| ||||||||||||||| |||||| Sbjct: 28679944 ggccgcgagctcctgctctcgctcgccgagtgcgtcaacctccaccgcctccccgggctc 28679885 Query: 385 gagaccgtcgccgtcgtctccaagaccaagggcgccaacgtcttcgcctggg 436 ||||||||||||||| || |||||||||||||||||| |||||||||||| Sbjct: 28679884 gagaccgtcgccgtcatcgggaagaccaagggcgccaacctcttcgcctggg 28679833 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gacgaccgccggggccgcctcgcg 51 |||||||||||||||| ||||||| Sbjct: 28679833 gacgaccgccggggcctcctcgcg 28679810
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 242 bits (122), Expect = 8e-61 Identities = 295/352 (83%), Gaps = 3/352 (0%) Strand = Plus / Minus Query: 88 gccatggtgcacagcgcgtatgacgccgtcgagctggtctccggcgtgcccggccgcatc 147 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| Sbjct: 28771508 gccatggtgcacagcgcgtacgacgccgtcgagctggtctccggcgtgccgggcgacatc 28771449 Query: 148 gaggccgtcgcctcccacgccgggaagctcctcgtcgcggcctccgactgctcgctccgc 207 | |||||| ||| || ||||||||| |||||||||||||| ||| |||| |||||| Sbjct: 28771448 gtggccgtggccgcctacgccgggaggctcctcgtcgcggggaaggacggctccctccgc 28771389 Query: 208 atctactccgcgccgccccccgccgacggcgagatccggaggggcgggccctacgcgctc 267 |||||| || | ||| || ||||| ||||| ||||| | ||| |||||| |||||||| Sbjct: 28771388 atctacgcctccccgggccacgccggcggcgggatcccgcgggacgggccgtacgcgctg 28771329 Query: 268 gagcgccaggagcagcgcctctggcgccgcg---cgccctccgccatggaggccagcgcc 324 ||||| ||| ||| || |||||||||| ||||| || ||||||| ||||||| Sbjct: 28771328 gagcggcagcagccctcgctgtggcgccgcgggacgcccctggcgatggaggtcagcgcc 28771269 Query: 325 agccgcgacctcctgctctcgctctccgagtgggtcgccctccaccgcctcccggggctc 384 ||||||| ||||||||||||||| ||||||| ||| ||||||||||||||| |||||| Sbjct: 28771268 ggccgcgagctcctgctctcgctcgccgagtgcgtcaacctccaccgcctccccgggctc 28771209 Query: 385 gagaccgtcgccgtcgtctccaagaccaagggcgccaacgtcttcgcctggg 436 ||||||||||||||| || |||||||||||||||||| |||||||||||| Sbjct: 28771208 gagaccgtcgccgtcatcgggaagaccaagggcgccaacctcttcgcctggg 28771157 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gacgaccgccggggccgcctcgcg 51 |||||||||||||||| ||||||| Sbjct: 28771157 gacgaccgccggggcctcctcgcg 28771134
>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete sequence Length = 158839 Score = 242 bits (122), Expect = 8e-61 Identities = 295/352 (83%), Gaps = 3/352 (0%) Strand = Plus / Plus Query: 88 gccatggtgcacagcgcgtatgacgccgtcgagctggtctccggcgtgcccggccgcatc 147 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| Sbjct: 18712 gccatggtgcacagcgcgtacgacgccgtcgagctggtctccggcgtgccgggcgacatc 18771 Query: 148 gaggccgtcgcctcccacgccgggaagctcctcgtcgcggcctccgactgctcgctccgc 207 | |||||| ||| || ||||||||| |||||||||||||| ||| |||| |||||| Sbjct: 18772 gtggccgtggccgcctacgccgggaggctcctcgtcgcggggaaggacggctccctccgc 18831 Query: 208 atctactccgcgccgccccccgccgacggcgagatccggaggggcgggccctacgcgctc 267 |||||| || | ||| || ||||| ||||| ||||| | ||| |||||| |||||||| Sbjct: 18832 atctacgcctccccgggccacgccggcggcgggatcccgcgggacgggccgtacgcgctg 18891 Query: 268 gagcgccaggagcagcgcctctggcgccgcg---cgccctccgccatggaggccagcgcc 324 ||||| ||| ||| || |||||||||| ||||| || ||||||| ||||||| Sbjct: 18892 gagcggcagcagccctcgctgtggcgccgcgggacgcccctggcgatggaggtcagcgcc 18951 Query: 325 agccgcgacctcctgctctcgctctccgagtgggtcgccctccaccgcctcccggggctc 384 ||||||| ||||||||||||||| ||||||| ||| ||||||||||||||| |||||| Sbjct: 18952 ggccgcgagctcctgctctcgctcgccgagtgcgtcaacctccaccgcctccccgggctc 19011 Query: 385 gagaccgtcgccgtcgtctccaagaccaagggcgccaacgtcttcgcctggg 436 ||||||||||||||| || |||||||||||||||||| |||||||||||| Sbjct: 19012 gagaccgtcgccgtcatcgggaagaccaagggcgccaacctcttcgcctggg 19063 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 gacgaccgccggggccgcctcgcg 51 |||||||||||||||| ||||||| Sbjct: 19063 gacgaccgccggggcctcctcgcg 19086
>dbj|AK120055.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O06, full insert sequence Length = 3591 Score = 242 bits (122), Expect = 8e-61 Identities = 295/352 (83%), Gaps = 3/352 (0%) Strand = Plus / Plus Query: 88 gccatggtgcacagcgcgtatgacgccgtcgagctggtctccggcgtgcccggccgcatc 147 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| Sbjct: 154 gccatggtgcacagcgcgtacgacgccgtcgagctggtctccggcgtgccgggcgacatc 213 Query: 148 gaggccgtcgcctcccacgccgggaagctcctcgtcgcggcctccgactgctcgctccgc 207 | |||||| ||| || ||||||||| |||||||||||||| ||| |||| |||||| Sbjct: 214 gtggccgtggccgcctacgccgggaggctcctcgtcgcggggaaggacggctccctccgc 273 Query: 208 atctactccgcgccgccccccgccgacggcgagatccggaggggcgggccctacgcgctc 267 |||||| || | ||| || ||||| ||||| ||||| | ||| |||||| |||||||| Sbjct: 274 atctacgcctccccgggccacgccggcggcgggatcccgcgggacgggccgtacgcgctg 333 Query: 268 gagcgccaggagcagcgcctctggcgccgcg---cgccctccgccatggaggccagcgcc 324 ||||| ||| ||| || |||||||||| ||||| || ||||||| ||||||| Sbjct: 334 gagcggcagcagccctcgctgtggcgccgcgggacgcccctggcgatggaggtcagcgcc 393 Query: 325 agccgcgacctcctgctctcgctctccgagtgggtcgccctccaccgcctcccggggctc 384 ||||||| ||||||||||||||| ||||||| ||| ||||||||||||||| |||||| Sbjct: 394 ggccgcgagctcctgctctcgctcgccgagtgcgtcaacctccaccgcctccccgggctc 453 Query: 385 gagaccgtcgccgtcgtctccaagaccaagggcgccaacgtcttcgcctggg 436 ||||||||||||||| || |||||||||||||||||| |||||||||||| Sbjct: 454 gagaccgtcgccgtcatcgggaagaccaagggcgccaacctcttcgcctggg 505 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 gacgaccgccggggccgcctcgcg 51 |||||||||||||||| ||||||| Sbjct: 505 gacgaccgccggggcctcctcgcg 528
>dbj|AK071327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089C05, full insert sequence Length = 3429 Score = 242 bits (122), Expect = 8e-61 Identities = 295/352 (83%), Gaps = 3/352 (0%) Strand = Plus / Plus Query: 88 gccatggtgcacagcgcgtatgacgccgtcgagctggtctccggcgtgcccggccgcatc 147 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| Sbjct: 163 gccatggtgcacagcgcgtacgacgccgtcgagctggtctccggcgtgccgggcgacatc 222 Query: 148 gaggccgtcgcctcccacgccgggaagctcctcgtcgcggcctccgactgctcgctccgc 207 | |||||| ||| || ||||||||| |||||||||||||| ||| |||| |||||| Sbjct: 223 gtggccgtggccgcctacgccgggaggctcctcgtcgcggggaaggacggctccctccgc 282 Query: 208 atctactccgcgccgccccccgccgacggcgagatccggaggggcgggccctacgcgctc 267 |||||| || | ||| || ||||| ||||| ||||| | ||| |||||| |||||||| Sbjct: 283 atctacgcctccccgggccacgccggcggcgggatcccgcgggacgggccgtacgcgctg 342 Query: 268 gagcgccaggagcagcgcctctggcgccgcg---cgccctccgccatggaggccagcgcc 324 ||||| ||| ||| || |||||||||| ||||| || ||||||| ||||||| Sbjct: 343 gagcggcagcagccctcgctgtggcgccgcgggacgcccctggcgatggaggtcagcgcc 402 Query: 325 agccgcgacctcctgctctcgctctccgagtgggtcgccctccaccgcctcccggggctc 384 ||||||| ||||||||||||||| ||||||| ||| ||||||||||||||| |||||| Sbjct: 403 ggccgcgagctcctgctctcgctcgccgagtgcgtcaacctccaccgcctccccgggctc 462 Query: 385 gagaccgtcgccgtcgtctccaagaccaagggcgccaacgtcttcgcctggg 436 ||||||||||||||| || |||||||||||||||||| |||||||||||| Sbjct: 463 gagaccgtcgccgtcatcgggaagaccaagggcgccaacctcttcgcctggg 514 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 gacgaccgccggggccgcctcgcg 51 |||||||||||||||| ||||||| Sbjct: 514 gacgaccgccggggcctcctcgcg 537
>ref|XM_469554.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3117 Score = 236 bits (119), Expect = 5e-59 Identities = 292/349 (83%), Gaps = 3/349 (0%) Strand = Plus / Plus Query: 91 atggtgcacagcgcgtatgacgccgtcgagctggtctccggcgtgcccggccgcatcgag 150 ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| | Sbjct: 1 atggtgcacagcgcgtacgacgccgtcgagctggtctccggcgtgccgggcgacatcgtg 60 Query: 151 gccgtcgcctcccacgccgggaagctcctcgtcgcggcctccgactgctcgctccgcatc 210 ||||| ||| || ||||||||| |||||||||||||| ||| |||| ||||||||| Sbjct: 61 gccgtggccgcctacgccgggaggctcctcgtcgcggggaaggacggctccctccgcatc 120 Query: 211 tactccgcgccgccccccgccgacggcgagatccggaggggcgggccctacgcgctcgag 270 ||| || | ||| || ||||| ||||| ||||| | ||| |||||| |||||||| ||| Sbjct: 121 tacgcctccccgggccacgccggcggcgggatcccgcgggacgggccgtacgcgctggag 180 Query: 271 cgccaggagcagcgcctctggcgccgcg---cgccctccgccatggaggccagcgccagc 327 || ||| ||| || |||||||||| ||||| || ||||||| ||||||| || Sbjct: 181 cggcagcagccctcgctgtggcgccgcgggacgcccctggcgatggaggtcagcgccggc 240 Query: 328 cgcgacctcctgctctcgctctccgagtgggtcgccctccaccgcctcccggggctcgag 387 ||||| ||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||| Sbjct: 241 cgcgagctcctgctctcgctcgccgagtgcgtcaacctccaccgcctccccgggctcgag 300 Query: 388 accgtcgccgtcgtctccaagaccaagggcgccaacgtcttcgcctggg 436 |||||||||||| || |||||||||||||||||| |||||||||||| Sbjct: 301 accgtcgccgtcatcgggaagaccaagggcgccaacctcttcgcctggg 349 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 gacgaccgccggggccgcctcgcg 51 |||||||||||||||| ||||||| Sbjct: 349 gacgaccgccggggcctcctcgcg 372
>gb|DQ237917.1| Oryza sativa (indica cultivar-group) TVLP1 (TVLP1) mRNA, complete cds Length = 3475 Score = 234 bits (118), Expect = 2e-58 Identities = 294/352 (83%), Gaps = 3/352 (0%) Strand = Plus / Plus Query: 88 gccatggtgcacagcgcgtatgacgccgtcgagctggtctccggcgtgcccggccgcatc 147 |||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||| Sbjct: 36 gccatggtgcacagcgcgtacgacgccgtcgagttggtctccggcgtgccgggcgacatc 95 Query: 148 gaggccgtcgcctcccacgccgggaagctcctcgtcgcggcctccgactgctcgctccgc 207 | |||||| ||| || ||||||||| |||||||||||||| ||| |||| |||||| Sbjct: 96 gtggccgtggccgcctacgccgggaggctcctcgtcgcggggaaggacggctccctccgc 155 Query: 208 atctactccgcgccgccccccgccgacggcgagatccggaggggcgggccctacgcgctc 267 |||||| || | ||| || ||||| ||||| ||||| | ||| |||||| |||||||| Sbjct: 156 atctacgcctccccgggccacgccggcggcgggatcccgcgggacgggccgtacgcgctg 215 Query: 268 gagcgccaggagcagcgcctctggcgccgcg---cgccctccgccatggaggccagcgcc 324 ||||| ||| ||| || |||||||||| ||||| || ||||||| ||||||| Sbjct: 216 gagcggcagcagccctcgctgtggcgccgcgggacgcccctggcgatggaggtcagcgcc 275 Query: 325 agccgcgacctcctgctctcgctctccgagtgggtcgccctccaccgcctcccggggctc 384 ||||||| ||||||||||||||| ||||||| ||| ||||||||||||||| |||||| Sbjct: 276 ggccgcgagctcctgctctcgctcgccgagtgcgtcaacctccaccgcctccccgggctc 335 Query: 385 gagaccgtcgccgtcgtctccaagaccaagggcgccaacgtcttcgcctggg 436 ||||||||||||||| || |||||||||||||||||| |||||||||||| Sbjct: 336 gagaccgtcgccgtcatcgggaagaccaagggcgccaacctcttcgcctggg 387 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 gacgaccgccggggccgcctcgcg 51 |||||||||||||||| ||||||| Sbjct: 387 gacgaccgccggggcctcctcgcg 410
>ref|NM_191307.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 822 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 363 cctccaccgcctcccggggctcgagaccgtcgccgtcgtctccaagaccaagggcgccaa 422 |||||| |||||||| ||||||||||||||||||||| || |||||||| |||||||| Sbjct: 704 cctccatcgcctccccgggctcgagaccgtcgccgtcatcgggaagaccaatggcgccaa 763 Query: 423 cgtcttcgcctggg 436 | |||||||||||| Sbjct: 764 cctcttcgcctggg 777
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 363 cctccaccgcctcccggggctcgagaccgtcgccgtcgtctccaagaccaagggcgccaa 422 |||||| |||||||| ||||||||||||||||||||| || |||||||| |||||||| Sbjct: 31873575 cctccatcgcctccccgggctcgagaccgtcgccgtcatcgggaagaccaatggcgccaa 31873634 Query: 423 cgtcttcgcctggg 436 | |||||||||||| Sbjct: 31873635 cctcttcgcctggg 31873648 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ccaaccttatcctcctccca 24 |||||||||||||||||||| Sbjct: 31158921 ccaaccttatcctcctccca 31158940
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131G08 Length = 158241 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 363 cctccaccgcctcccggggctcgagaccgtcgccgtcgtctccaagaccaagggcgccaa 422 |||||| |||||||| ||||||||||||||||||||| || |||||||| |||||||| Sbjct: 59653 cctccatcgcctccccgggctcgagaccgtcgccgtcatcgggaagaccaatggcgccaa 59712 Query: 423 cgtcttcgcctggg 436 | |||||||||||| Sbjct: 59713 cctcttcgcctggg 59726
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 363 cctccaccgcctcccggggctcgagaccgtcgccgtcgtctccaagaccaagggcgccaa 422 |||||| |||||||| |||||||||||||||||| || || |||||||| |||||||| Sbjct: 15446672 cctccatcgcctccccgggctcgagaccgtcgccatcatcgggaagaccaatggcgccaa 15446613 Query: 423 cgtcttcgcctggg 436 | |||||||||||| Sbjct: 15446612 cctcttcgcctggg 15446599
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 363 cctccaccgcctcccggggctcgagaccgtcgccgtcgtctccaagaccaagggcgccaa 422 |||||| |||||||| |||||||||||||||||| || || |||||||| |||||||| Sbjct: 95964 cctccatcgcctccccgggctcgagaccgtcgccatcatcgggaagaccaatggcgccaa 95905 Query: 423 cgtcttcgcctggg 436 | |||||||||||| Sbjct: 95904 cctcttcgcctggg 95891
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 371 gcctcccggggctcgagaccgtcgccgtcgtctccaagaccaagggcgccaacgtcttcg 430 ||||||| |||||||||||||||| |||| || |||||||| ||||||||| |||||| Sbjct: 19184767 gcctccccgggctcgagaccgtcgtcgtcatcgggaagaccaatggcgccaacctcttcg 19184708 Query: 431 cctggg 436 |||||| Sbjct: 19184707 cctggg 19184702
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 371 gcctcccggggctcgagaccgtcgccgtcgtctccaagaccaagggcgccaacgtcttcg 430 ||||||| |||||||||||||||| |||| || |||||||| ||||||||| |||||| Sbjct: 118288 gcctccccgggctcgagaccgtcgtcgtcatcgggaagaccaatggcgccaacctcttcg 118229 Query: 431 cctggg 436 |||||| Sbjct: 118228 cctggg 118223
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 306 cgccatggaggccagcgccagccgcg 331 |||||||| ||||||||||||||||| Sbjct: 52875 cgccatggcggccagcgccagccgcg 52850
>emb|AL591492.11| Zebrafish DNA sequence from clone BUSM1-261O22 in linkage group 20 Contains a novel gene similar to FKBP3 (FK506 binding protein 3), a novel gene for a protein similar to pre-mRNA processing proteins, a novel retrotransposon and two CpG islands, complete sequence Length = 92083 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 287 tctggcgccgcgcgccctccgccatg 312 |||| ||||||||||||||||||||| Sbjct: 12438 tctgtcgccgcgcgccctccgccatg 12413
>ref|XM_521899.1| PREDICTED: Pan troglodytes similar to carbohydrate (keratan sulfate Gal-6) sulfotransferase 1; carbohydrate (chondroitin 6/keratan) sulfotransferase 1 (LOC466500), mRNA Length = 1599 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gcgccagccgcgacctcctgc 340 ||||||||||||||||||||| Sbjct: 716 gcgccagccgcgacctcctgc 736
>ref|NM_003654.2| Homo sapiens carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 (CHST1), mRNA Length = 2734 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gcgccagccgcgacctcctgc 340 ||||||||||||||||||||| Sbjct: 1024 gcgccagccgcgacctcctgc 1044
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 388 accgtcgccgtcgtctccaagaccaagggcgcc 420 |||||| ||||||||||||||||| ||||||| Sbjct: 683651 accgtccccgtcgtctccaagacctcgggcgcc 683619
>gb|BC028235.1| Homo sapiens carbohydrate (keratan sulfate Gal-6) sulfotransferase 1, mRNA (cDNA clone MGC:40025 IMAGE:5245338), complete cds Length = 2453 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gcgccagccgcgacctcctgc 340 ||||||||||||||||||||| Sbjct: 692 gcgccagccgcgacctcctgc 712
>ref|XM_569520.1| Cryptococcus neoformans var. neoformans JEC21 nuclear matrix protein NMP200 (CNC02380) partial mRNA Length = 1637 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 388 accgtcgccgtcgtctccaagaccaagggcgcc 420 |||||| ||||||||||||||||| ||||||| Sbjct: 34 accgtccccgtcgtctccaagacctcgggcgcc 66
>gb|AY339617.1| Homo sapiens carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 (CHST1) gene, complete cds Length = 18954 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gcgccagccgcgacctcctgc 340 ||||||||||||||||||||| Sbjct: 16696 gcgccagccgcgacctcctgc 16716
>gb|AC087442.13| Homo sapiens chromosome 11, clone RP11-495O11, complete sequence Length = 200269 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgc 340 ||||||||||||||||||||| Sbjct: 75762 gcgccagccgcgacctcctgc 75742
>gb|BC022567.1| Homo sapiens carbohydrate (keratan sulfate Gal-6) sulfotransferase 1, mRNA (cDNA clone MGC:27060 IMAGE:4814499), complete cds Length = 2734 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gcgccagccgcgacctcctgc 340 ||||||||||||||||||||| Sbjct: 1024 gcgccagccgcgacctcctgc 1044
>gb|AF090137.1|AF090137 Homo sapiens carbohydrate sulfotransferase 1 (CHST1) mRNA, complete cds Length = 1241 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gcgccagccgcgacctcctgc 340 ||||||||||||||||||||| Sbjct: 357 gcgccagccgcgacctcctgc 377
>gb|U68299.1|MCU68299 Mouse cytomegalovirus 1 complete genomic sequence Length = 230278 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 ctgctctcgctctccgagtgg 357 ||||||||||||||||||||| Sbjct: 127851 ctgctctcgctctccgagtgg 127871
>gb|U65637.1|HSU65637 Homo sapiens chondroitin-6-sulfotransferase mRNA, complete cds Length = 2190 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gcgccagccgcgacctcctgc 340 ||||||||||||||||||||| Sbjct: 477 gcgccagccgcgacctcctgc 497
>dbj|AB003791.1| Homo sapiens mRNA for keratan sulfate Gal-6-sulfotransferase, complete cds Length = 2415 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gcgccagccgcgacctcctgc 340 ||||||||||||||||||||| Sbjct: 719 gcgccagccgcgacctcctgc 739
>gb|AC166710.7| Mus musculus chromosome 1, clone RP24-252K15, complete sequence Length = 156244 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 148815 gcgccagccgcggcctcctgctct 148838
>ref|XM_466121.1| Oryza sativa (japonica cultivar-group), mRNA Length = 408 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gaccgtcgccgtcgtctcca 406 |||||||||||||||||||| Sbjct: 268 gaccgtcgccgtcgtctcca 287
>gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E01, complete sequence Length = 180426 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ccaaccttatcctcctccca 24 |||||||||||||||||||| Sbjct: 35341 ccaaccttatcctcctccca 35322
>ref|XM_417734.1| PREDICTED: Gallus gallus similar to LOC394859 protein (LOC419587), mRNA Length = 2206 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 aggccagcgccagccgcgac 333 |||||||||||||||||||| Sbjct: 391 aggccagcgccagccgcgac 372
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 cgccagccgcgacctcctgc 340 |||||||||||||||||||| Sbjct: 238284 cgccagccgcgacctcctgc 238265
>ref|XM_540763.2| PREDICTED: Canis familiaris similar to carbohydrate (keratan sulfate Gal-6) sulfotransferase 1, transcript variant 1 (LOC483642), mRNA Length = 1848 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gcgccagccgcgacctcctg 339 |||||||||||||||||||| Sbjct: 919 gcgccagccgcgacctcctg 938
>ref|XM_845613.1| PREDICTED: Canis familiaris similar to carbohydrate (keratan sulfate Gal-6) sulfotransferase 1, transcript variant 2 (LOC483642), mRNA Length = 1978 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gcgccagccgcgacctcctg 339 |||||||||||||||||||| Sbjct: 1049 gcgccagccgcgacctcctg 1068
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ccgatcgcgccggcccggccatgg 94 |||| ||||||||||||||||||| Sbjct: 266684 ccgaccgcgccggcccggccatgg 266707
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cgccccccgccgacggcgag 240 |||||||||||||||||||| Sbjct: 96673 cgccccccgccgacggcgag 96692
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 cggcccggccatggtgcacagcgc 104 ||||||||||||||||| |||||| Sbjct: 1712600 cggcccggccatggtgcgcagcgc 1712623
>dbj|AK145499.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0007J20 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 3406 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 458 gcgccagccgcggcctcctgctct 435
>dbj|AK159084.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420001B22 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 2901 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 424 gcgccagccgcggcctcctgctct 401
>dbj|AK145682.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0029C11 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 3404 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 457 gcgccagccgcggcctcctgctct 434
>dbj|AK162264.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420489N23 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 1969 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 460 gcgccagccgcggcctcctgctct 437
>dbj|AK159956.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420039N16 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 3348 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 397 gcgccagccgcggcctcctgctct 374
>dbj|AK168657.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920041N14 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 3341 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 397 gcgccagccgcggcctcctgctct 374
>dbj|AK159614.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420025L06 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 3404 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 460 gcgccagccgcggcctcctgctct 437
>dbj|AK167200.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0038M11 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 3404 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 457 gcgccagccgcggcctcctgctct 434
>dbj|AK165844.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730006M20 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 3670 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 455 gcgccagccgcggcctcctgctct 432
>dbj|AK089058.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430038A15 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 2934 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 456 gcgccagccgcggcctcctgctct 433
>dbj|AK037517.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130023B09 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 2594 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 397 gcgccagccgcggcctcctgctct 374
>dbj|AK029944.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932409F19 product:heterogeneous nuclear ribonucleoprotein U, full insert sequence Length = 2848 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 401 gcgccagccgcggcctcctgctct 378
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ccaaccttatcctcctccca 24 |||||||||||||||||||| Sbjct: 15643237 ccaaccttatcctcctccca 15643218
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gaccgtcgccgtcgtctcca 406 |||||||||||||||||||| Sbjct: 20532561 gaccgtcgccgtcgtctcca 20532580
>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0014K08 Length = 177263 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ccaaccttatcctcctccca 24 |||||||||||||||||||| Sbjct: 85266 ccaaccttatcctcctccca 85285
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ggtcgccctccaccgcctcc 376 |||||||||||||||||||| Sbjct: 1180239 ggtcgccctccaccgcctcc 1180220 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggtcgccctccaccgcctcc 376 |||||||||||||||||||| Sbjct: 1159707 ggtcgccctccaccgcctcc 1159726 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggtcgccctccaccgcctcc 376 |||||||||||||||||||| Sbjct: 1154985 ggtcgccctccaccgcctcc 1155004 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggtcgccctccaccgcctcc 376 |||||||||||||||||||| Sbjct: 1151814 ggtcgccctccaccgcctcc 1151833 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggtcgccctccaccgcctcc 376 |||||||||||||||||||| Sbjct: 1145952 ggtcgccctccaccgcctcc 1145971
>gb|AF275943.1|AF275943 Streptomyces avermitilis avermectin polyketide synthase gene, partial cds Length = 11096 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggtcgccctccaccgcctcc 376 |||||||||||||||||||| Sbjct: 8256 ggtcgccctccaccgcctcc 8275
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gccgccccccgccgacggcg 238 |||||||||||||||||||| Sbjct: 3122420 gccgccccccgccgacggcg 3122401
>dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21 Length = 137959 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gaccgtcgccgtcgtctcca 406 |||||||||||||||||||| Sbjct: 28119 gaccgtcgccgtcgtctcca 28138
>gb|BC018353.1| Mus musculus heterogeneous nuclear ribonucleoprotein U, mRNA (cDNA clone MGC:5768 IMAGE:3584692), complete cds Length = 3272 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gcgccagccgcgacctcctgctct 343 |||||||||||| ||||||||||| Sbjct: 300 gcgccagccgcggcctcctgctct 277
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster, partial and complete cds Length = 113234 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ccgccgacggcgagatccgg 246 |||||||||||||||||||| Sbjct: 93405 ccgccgacggcgagatccgg 93386
>dbj|AB032367.1| Streptomyces avermitilis polyketide synthase gene cluster (aveA1, aveA2, aveA3, aveA4) and aveC, aveE genes, complete cds Length = 64957 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ggtcgccctccaccgcctcc 376 |||||||||||||||||||| Sbjct: 42523 ggtcgccctccaccgcctcc 42504 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggtcgccctccaccgcctcc 376 |||||||||||||||||||| Sbjct: 21991 ggtcgccctccaccgcctcc 22010 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggtcgccctccaccgcctcc 376 |||||||||||||||||||| Sbjct: 17269 ggtcgccctccaccgcctcc 17288 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggtcgccctccaccgcctcc 376 |||||||||||||||||||| Sbjct: 14098 ggtcgccctccaccgcctcc 14117 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggtcgccctccaccgcctcc 376 |||||||||||||||||||| Sbjct: 8236 ggtcgccctccaccgcctcc 8255 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,692,758 Number of Sequences: 3902068 Number of extensions: 2692758 Number of successful extensions: 67299 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66287 Number of HSP's gapped (non-prelim): 1005 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
