>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1183

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = -2

Query: 237 PPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQPAHPWQ 58
           PPY RLL +  T P  FP +       +   +  APAH H +     QQ   +    P Q
Sbjct: 445 PPYGRLLPNNNTHPGPFPPT-----GGQSTAHPPAPAHHHHQ-----QQQQPQPQPQPQQ 494

Query: 57  HHL----PPRPQA 31
           HH     PP P A
Sbjct: 495 HHHGNSGPPPPGA 507

>IL4RA_HUMAN (P24394) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)|
           (CD124 antigen) [Contains: Soluble interleukin-4
           receptor alpha chain (sIL4Ralpha/prot) (IL-4-binding
           protein) (IL4-BP)]
          Length = 825

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 102 RDPPPNGHELELSHSLPAHLGLDPA-KMQEMRMALFPNDEEDEDMEDGFPS 251
           R+PP +     L  S P HLGL+P  K+++M     P ++  + + D   S
Sbjct: 659 REPPRSPQSSHLPSSSPEHLGLEPGEKVEDMPKPPLPQEQATDPLVDSLGS 709

>IWS1_USTMA (Q4P7X6) Transcription factor IWS1|
          Length = 380

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = +3

Query: 198 ALFPNDEEDEDMEDG------FPSDHRHLSRERMNVDSPNTS--GKGQRMRSLSPLHGSS 353
           A+F  D+EDED +DG       PS  +  +R+  N D P+ +   K ++ R  SP   SS
Sbjct: 76  AIFDEDDEDED-DDGDEVGNDLPSFRKRDARDASNADDPDAAVMRKKKKKRHHSPEEASS 134

Query: 354 QK 359
            +
Sbjct: 135 MR 136

>PCQAP_MOUSE (Q924H2) Positive cofactor 2 glutamine/Q-rich-associated protein|
           (PC2 glutamine/Q-rich-associated protein) (mPcqap)
          Length = 792

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
 Frame = -2

Query: 252 QMESHPPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQP 73
           Q +    +L  LHH           LQ  AQ +     +      L+    +QQP ++QP
Sbjct: 216 QQQQQQQHLIKLHHQSQQQQIQQQQLQRMAQLQLQQQQQQQQQQALQAQPPMQQPSMQQP 275

Query: 72  --------------AHPWQHHLPPRPQAQ 28
                          H  QHH PP PQAQ
Sbjct: 276 QPPPSQALPQQLSQLHHPQHHQPP-PQAQ 303

>PHC2_MOUSE (Q9QWH1) Polyhomeotic-like protein 2 (mPH2) (Early development|
           regulatory protein 2) (p36)
          Length = 850

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -2

Query: 135 APAHAHLEVGLLLQQPVVEQPAHPW---QHHLPPRPQAQ 28
           APA+AHL+   LL QP  + P   +   Q   PPRP  Q
Sbjct: 323 APAYAHLQSHQLLPQPPAKHPQPQFVAQQQPQPPRPAPQ 361

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 243  SHPPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQ-PAH 67
            +HPP L+L+   + +PS+ PA   G  Q +   +   PA +H   G L Q P     P H
Sbjct: 974  AHPPPLQLMPQSQPLPSS-PAQPPGLTQSQ---SLPPPAASHPTTGGLHQVPSQSPFPQH 1029

Query: 66   PWQHHLPP 43
            P+    PP
Sbjct: 1030 PFVPGGPP 1037

>MAGBI_HUMAN (Q96M61) Melanoma-associated antigen B18 (MAGE-B18 antigen)|
          Length = 343

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 207 ETMPSAFPASLQGQAQD-EQATNAKAPAHAH 118
           +T+PSAFP+  +   +D EQ T A+A A AH
Sbjct: 293 DTVPSAFPSCYEEALRDEEQRTQARAAARAH 323

>AMEL_CAVPO (Q9Z0K9) Amelogenin precursor|
          Length = 226

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
 Frame = -2

Query: 165 AQDEQATNAKAPAHAHLEVG-----LLLQQPVVEQPAH----PWQHHLPPRP 37
           +Q    ++   P H H+ VG     ++ QQP++  P H    P QHH P  P
Sbjct: 85  SQQHPPSHTTLPPHHHIPVGPAQQPVVPQQPLMPVPGHHSMTPNQHHQPNLP 136

>ZN512_HUMAN (Q96ME7) Zinc finger protein 512|
          Length = 567

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 207 PNDEEDEDMEDGFPSDHRHLSRERMNVDSPNTSGKGQRMRSLSPLHGS 350
           P  EEDED  +     H+   R++     PN   + +R+R   P++ +
Sbjct: 105 PRQEEDEDYREFPQKKHKLYGRKQRPKTQPNPKSQARRIRKEPPVYAA 152

>YIGA_SHIFL (Q83IW8) Hypothetical protein yigA|
          Length = 235

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
 Frame = +3

Query: 129 LELSHSLPAHLGLDPAKMQEMRMA-----------LFPNDEEDEDMEDGFPSDHRHLSRE 275
           L L  SL A   LD   M+  R A           LFP     +    G PS+H HL+  
Sbjct: 90  LYLQRSLTAASSLDDMLMRFHRWARDLGLAGASLRLFP-----DRWRLGAPSNHTHLALS 144

Query: 276 RMNVDSPNTSGKGQRMRSLSPLHG 347
           R + +       GQ    L PL+G
Sbjct: 145 RQSFEPLRIQRLGQEQHYLGPLNG 168

>YIGA_ECOLI (P23305) Hypothetical protein yigA|
          Length = 235

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
 Frame = +3

Query: 129 LELSHSLPAHLGLDPAKMQEMRMA-----------LFPNDEEDEDMEDGFPSDHRHLSRE 275
           L L  SL A   LD   M+  R A           LFP     +    G PS+H HL+  
Sbjct: 90  LYLQRSLTAASSLDDMLMRFHRWARDLGLAGASLRLFP-----DRWRLGAPSNHTHLALS 144

Query: 276 RMNVDSPNTSGKGQRMRSLSPLHG 347
           R + +       GQ    L PL+G
Sbjct: 145 RQSFEPLRIQRLGQEQHYLGPLNG 168

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 32/124 (25%), Positives = 42/124 (33%), Gaps = 13/124 (10%)
 Frame = -2

Query: 336  ETETSSSDLYHLCWVNPHSSFLC*GVCDQMESHPPYLRLLHHWETMPSAFPASLQGQAQD 157
            E+++ SS    +    P +     G      + PP    L      PSA     QG    
Sbjct: 722  ESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPAT 781

Query: 156  EQATNAK----APA-HAHLEVGLLLQQPVVEQP--------AHPWQHHLPPRPQAQTY*S 16
             Q  N      APA H H++    L  P +  P        A P Q    P PQ   +  
Sbjct: 782  SQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHGQ 841

Query: 15   GRPG 4
            G PG
Sbjct: 842  GPPG 845



 Score = 29.3 bits (64), Expect = 5.2
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -2

Query: 243  SHPPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQPAHP 64
            +HPP L+L+   + +PS+ PA   G  Q +   +   PA +H   GL         P HP
Sbjct: 975  AHPPPLQLMPQSQPLPSS-PAQPPGLTQSQ---SLPPPAASHPTTGLHQVPSQSPFPQHP 1030

Query: 63   WQHHLPP 43
            +    PP
Sbjct: 1031 FVPGGPP 1037

>ZN512_MACFA (Q95JV5) Zinc finger protein 512|
          Length = 565

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 207 PNDEEDEDMEDGFPSDHRHLSRERMNVDSPNTSGKGQRMRSLSPLHGS 350
           P  EEDED  +     H+   R++     PN   + +R+R   P++ +
Sbjct: 104 PRQEEDEDYREFPQKKHKLYGRKQRPKTQPNPKSQARRIRKEPPVYAA 151

>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1186

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
 Frame = -2

Query: 237 PPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQPAHPWQ 58
           PPY RLL +    P  FP S   Q      + A  P   H       QQ   +Q     Q
Sbjct: 445 PPYGRLLANSNAHPGPFPPSTGAQ------STAHPPVSTHHHHHQQQQQQQQQQQQQQQQ 498

Query: 57  HH---LPPRPQA 31
           HH    PP P A
Sbjct: 499 HHGNSGPPPPGA 510

>MATK_SCIVE (Q9MVV9) Maturase K (Intron maturase)|
          Length = 505

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 145 RCLLILGLTLQRCRKCGWHCFPMMKKTKIWRMAFHLITDTSAEKG*MWIH 294
           R LL+L  T  + +KC +H F      K W+ +FHL     A+   +WIH
Sbjct: 280 RSLLVLKGTQLQVKKCRYHLF------KFWQCSFHL----WAQPYRIWIH 319

>TRMB_RHOPA (Q6NCM9) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 265

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 240 GFPSDHRHLSRERMNVDSPNTSGKGQRMRSLSPLHGSSQKFGRRSGVLXRKEPHALLESM 419
           G P      SR   N+D P+++   +       +HG    FGRR G   R     L+E++
Sbjct: 7   GRPVQKCERSRLMFNIDQPDSAPDNEDHDGDVVMHGQGSFFGRRKGHKLRAHQADLIENL 66

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -2

Query: 243  SHPPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQPAHP 64
            +HPP L+L+   + +PS+ PA   G  Q +   N   P  +H   GL    P      HP
Sbjct: 983  AHPPPLQLMPQSQPLPSS-PAQPPGLTQSQ---NLPPPPASHPPTGLHQVAPQPPFAQHP 1038

Query: 63   WQHHLPP 43
            +    PP
Sbjct: 1039 FVPGGPP 1045

>ATG1_EMENI (Q5BCU8) Serine/threonine-protein kinase atg1 (EC 2.7.11.1)|
           (Autophagy-related protein 1)
          Length = 935

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 150 PAHLGLDPAKMQEMRMALFPNDEEDEDMEDGFPSDHRHLSRERMNVDSPNTSGKGQRMR 326
           P  +  + A+ Q +   ++P + + E  ED +P  HR++       D P T      MR
Sbjct: 353 PEVIPTESAEPQSVSDTIYPRNNDAEPKEDRYPPPHRYVPHN----DRPQTPTSSSPMR 407

>SPRL1_MOUSE (P70663) SPARC-like protein 1 precursor (Matrix glycoprotein Sc1)|
           (Extracellular matrix protein 2)
          Length = 650

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 213 DEEDEDMEDGFPSDHRHLSRERMNVDSPNTSGKGQRMRSLSPLHGSSQ 356
           +EE+E  + G PSD++   +E +  + P +  +G R +S   L  SSQ
Sbjct: 203 EEEEEPEDIGAPSDNQEEGKEPLE-EQPTSKWEGNREQSDDTLEESSQ 249

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = -2

Query: 201  MPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQPAHPWQHHLPPRPQA 31
            M S  P  + GQA  +Q    + P+H H            + P H   H +PP   A
Sbjct: 1705 MMSQKPPPMPGQAMQQQPLQQQPPSHQHPHPH--------QHPQHQHPHQMPPNQTA 1753

>ACOR_RALEU (P28614) Acetoin catabolism regulatory protein|
          Length = 668

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 162 GLDPAKMQEMRMALFPNDEEDEDMEDGFPSDHRH 263
           GLDP++MQE R+   P   E ++  D F    RH
Sbjct: 47  GLDPSRMQEARILPQPRLREHQERIDDFARIARH 80

>PURA_DROME (Q9Y0Y2) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 447

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 160 LGLTLQRCRKCGWHCFPMMKKTKI 231
           +G+T +R R+CGW   P++K T +
Sbjct: 318 VGVTTKRKRRCGWLDIPLLKYTSL 341

>GP2D_CHLMU (Q46438) Virulence plasmid protein pGP2-D|
          Length = 353

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 333 SPLHGSSQKFGRRSGVLXRKEP 398
           SP+H  +QKFGRR G L +  P
Sbjct: 12  SPIHLENQKFGRRPGQLIKISP 33

>Y1672_METJA (Q59066) Hypothetical protein MJ1672|
          Length = 800

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 281 ECGFTQHKW*RSEDEVSVSFAWFFSEIWKEI 373
           E G T + + +SED+ S    W F++ WKE+
Sbjct: 367 EVGVTPNDFKKSEDKESKEKTWGFAKKWKEV 397

>PCQAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associated protein|
           (PC2 glutamine/Q-rich-associated protein) (TPA-inducible
           gene 1 protein) (TIG-1) (Activator-recruited cofactor
           105 kDa component) (ARC105) (CTG repeat protein 7a)
          Length = 788

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
 Frame = -2

Query: 183 ASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQP--------------AHPWQHHLP 46
           A LQ Q Q +Q    +      L+    +QQP ++QP               H  QHH P
Sbjct: 242 AQLQLQQQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQP 301

Query: 45  PRPQAQ 28
           P PQ Q
Sbjct: 302 P-PQPQ 306

>FTZF1_BOMMO (P49867) Nuclear hormone receptor FTZ-F1 (BmFTZ-F1)|
          Length = 534

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -2

Query: 255 DQMESHPPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQ 76
           D+ E+H P+          P AF    Q       ++ A+A +   L V  ++++ V   
Sbjct: 259 DKWEAHSPH-------SASPDAFTFDTQSNTAATPSSTAEATSTETLRVSPMIREFVQTV 311

Query: 75  PAHPWQHHLPPRPQAQTY 22
               WQ+ L    Q+QTY
Sbjct: 312 DDREWQNALFGLLQSQTY 329

>DEXT_ARTGO (P70744) Dextranase precursor (EC 3.2.1.11)|
           (Alpha-1,6-glucan-6-glucanohydrolase) (Endodextranase)
          Length = 640

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +2

Query: 263 PQQRKDECGFTQHKW*RSEDEVSVSFAWFFSEIWKEIWCAXQERTTCTAGINVKSTELGP 442
           P+  K + G+T+        E  ++ +W   E  K++W     RT  T   +    ++ P
Sbjct: 111 PRSGKGKIGYTEEDGAEFSSEAGLTMSWSSFEYAKDVWVEVSLRTGQTIS-SADQVQIRP 169

Query: 443 SSH 451
           SS+
Sbjct: 170 SSY 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,357,197
Number of Sequences: 219361
Number of extensions: 1577766
Number of successful extensions: 5279
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5264
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)