ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl05f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BC025467.1| Mus musculus AE binding protein 2, mRNA (cDNA clo... 46 0.087
2gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosom... 46 0.087
3ref|NM_001005605.1| Mus musculus AE binding protein 2 (Aebp2), t... 46 0.087
4emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete ... 44 0.34
5dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.34
6gb|AE004849.1| Pseudomonas aeruginosa PAO1, section 410 of 529 o... 44 0.34
7gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.34
8dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.34
9ref|XM_483075.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
10ref|NM_186067.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
11ref|NM_185761.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
12gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.4
13emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.4
14gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.4
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
19dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
20dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
21dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
22dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
23dbj|AK102353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
24gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.4
25gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 1.4
26gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.4
27gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
28gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.4
29gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 40 5.4
30gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.4
31ref|XM_848999.1| PREDICTED: Canis familiaris similar to RIC3 pro... 40 5.4
32ref|XM_743108.1| Aspergillus fumigatus Af293 hypothetical protei... 40 5.4
33gb|AY162971.1| Micromonospora chersina dynemicin enediyne iterat... 40 5.4
34emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.4
35emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete ... 40 5.4
36emb|AJ632203.2| Streptomyces antibioticus oviedomycin biosynthet... 40 5.4
37emb|AL954258.2| Pan troglodytes chromosome 22 clone PTB-146D01 m... 40 5.4
38emb|AJ621740.1| Gallus gallus GMCSF gene for granulocyte-macroph... 40 5.4
39gb|AE005999.1| Caulobacter crescentus CB15 section 325 of 359 of... 40 5.4
40gb|AC152174.15| Gasterosteus aculeatus clone ch213-202d23, compl... 40 5.4
41gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 gen... 40 5.4
42dbj|AB041960.1| TT virus DNA, complete genome, isolate:So-TTV2 40 5.4
43dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
44dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
45gb|AF546156.1| Micromonospora chersinia UnbL (unbL), UnbV (unbV)... 40 5.4
46gb|AF151965.1|AF151965 Pseudomonas putida strain KT2440 proline ... 40 5.4
47gb|AF153207.1|AF153207 Pseudomonas putida proline dehydrogenase ... 40 5.4
48dbj|AK070291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
49dbj|AK067277.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
50gb|AY109356.1| Zea mays CL604_1 mRNA sequence 40 5.4
51gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.4
52gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
53gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4 
>gb|BC025467.1| Mus musculus AE binding protein 2, mRNA (cDNA clone IMAGE:5351959)
          Length = 3752

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 209 cgccatggccgccgcgctcgccg 231
           |||||||||||||||||||||||
Sbjct: 201 cgccatggccgccgcgctcgccg 223
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>gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosome 6, complete sequence
          Length = 182955

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 209   cgccatggccgccgcgctcgccg 231
             |||||||||||||||||||||||
Sbjct: 30404 cgccatggccgccgcgctcgccg 30426
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>ref|NM_001005605.1| Mus musculus AE binding protein 2 (Aebp2), transcript variant 1,
           mRNA
          Length = 6192

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 209 cgccatggccgccgcgctcgccg 231
           |||||||||||||||||||||||
Sbjct: 3   cgccatggccgccgcgctcgccg 25
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>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29
          Length = 299050

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 374   ggtgaccgggacgccgcggacggcgc 399
             ||||| ||||||||||||||||||||
Sbjct: 13487 ggtgagcgggacgccgcggacggcgc 13512
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 208     gcgccatggccgccgcgctcgc 229
               ||||||||||||||||||||||
Sbjct: 7432000 gcgccatggccgccgcgctcgc 7431979
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>gb|AE004849.1| Pseudomonas aeruginosa PAO1, section 410 of 529 of the complete
            genome
          Length = 10113

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 287  ggcgtggggcagcagcaggacg 308
            ||||||||||||||||||||||
Sbjct: 5963 ggcgtggggcagcagcaggacg 5984
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 209     cgccatggccgccgcgctcgccgcgg 234
               |||| |||||||||||||||||||||
Sbjct: 3521119 cgccctggccgccgcgctcgccgcgg 3521094



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 214     tggccgccgcgctcgccgcgg 234
               |||||||||||||||||||||
Sbjct: 2875197 tggccgccgcgctcgccgcgg 2875177



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 214     tggccgccgcgctcgccgcgg 234
               |||||||||||||||||||||
Sbjct: 2770455 tggccgccgcgctcgccgcgg 2770435



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    ggccgccgcgctcgccgcgg 234
              ||||||||||||||||||||
Sbjct: 675713 ggccgccgcgctcgccgcgg 675732
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 207     ggcgccatggccgccgcgctcgccgc 232
               ||||||| ||||||||||||||||||
Sbjct: 1314991 ggcgccaaggccgccgcgctcgccgc 1315016



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 214     tggccgccgcgctcgccgcgg 234
               |||||||||||||||||||||
Sbjct: 3497493 tggccgccgcgctcgccgcgg 3497513
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>ref|XM_483075.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1392

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 210  gccatggccgccgcgctcgccgcgg 234
            |||| ||||||||||||||||||||
Sbjct: 1267 gccaaggccgccgcgctcgccgcgg 1291
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>ref|NM_186067.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 921

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 208 gcgccatggccgccgcgctcgccgcggac 236
           ||||||||||||||| ||||| |||||||
Sbjct: 236 gcgccatggccgccgagctcggcgcggac 264
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>ref|NM_185761.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1368

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 204 ccgggcgccatggccgccgcgctcgccgc 232
           ||||||||||| | |||||||||||||||
Sbjct: 205 ccgggcgccatcgacgccgcgctcgccgc 233
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 214    tggccgccgcgctcgccgcgg 234
              |||||||||||||||||||||
Sbjct: 737887 tggccgccgcgctcgccgcgg 737907
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 214     tggccgccgcgctcgccgcgg 234
               |||||||||||||||||||||
Sbjct: 1163683 tggccgccgcgctcgccgcgg 1163703



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    ggccgccgcgctcgccgcgg 234
              ||||||||||||||||||||
Sbjct: 528220 ggccgccgcgctcgccgcgg 528201
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 215     ggccgccgcgctcgccgcggacctc 239
               |||||||| ||||||||||||||||
Sbjct: 1390101 ggccgccgtgctcgccgcggacctc 1390125



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 216     gccgccgcgctcgccgcgga 235
               ||||||||||||||||||||
Sbjct: 5226162 gccgccgcgctcgccgcgga 5226181



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 355    gacgtggacggctcgccccggtgaccgggacg 386
              |||| |||||||||||| ||||||||| ||||
Sbjct: 392992 gacggggacggctcgccacggtgaccgcgacg 393023
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 210      gccatggccgccgcgctcgccgcgg 234
                |||| ||||||||||||||||||||
Sbjct: 24160670 gccaaggccgccgcgctcgccgcgg 24160646
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 208      gcgccatggccgccgcgctcgccgcggac 236
                ||||||||||||||| ||||| |||||||
Sbjct: 28004605 gcgccatggccgccgagctcggcgcggac 28004633



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 204      ccgggcgccatggccgccgcgctcgccgc 232
                ||||||||||| | |||||||||||||||
Sbjct: 21783619 ccgggcgccatcgacgccgcgctcgccgc 21783647
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 216      gccgccgcgctcgccgcggac 236
                |||||||||||||||||||||
Sbjct: 28566610 gccgccgcgctcgccgcggac 28566590
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>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0534A03
          Length = 153170

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 204    ccgggcgccatggccgccgcgctcgccgc 232
              ||||||||||| | |||||||||||||||
Sbjct: 100802 ccgggcgccatcgacgccgcgctcgccgc 100830
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>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1343_D04
          Length = 143407

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 208   gcgccatggccgccgcgctcgccgcggac 236
             ||||||||||||||| ||||| |||||||
Sbjct: 93939 gcgccatggccgccgagctcggcgcggac 93967
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>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0550B04
          Length = 150131

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 216   gccgccgcgctcgccgcggac 236
             |||||||||||||||||||||
Sbjct: 58088 gccgccgcgctcgccgcggac 58068
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>dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0605H02
          Length = 175547

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 210   gccatggccgccgcgctcgccgcgg 234
             |||| ||||||||||||||||||||
Sbjct: 27009 gccaaggccgccgcgctcgccgcgg 26985
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>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0028A08
          Length = 150818

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 210    gccatggccgccgcgctcgccgcgg 234
              |||| ||||||||||||||||||||
Sbjct: 114156 gccaaggccgccgcgctcgccgcgg 114132
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>dbj|AK102353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091F07, full
           insert sequence
          Length = 1613

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 216 gccgccgcgctcgccgcggac 236
           |||||||||||||||||||||
Sbjct: 256 gccgccgcgctcgccgcggac 276
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 379     ccgggacgccgcggacggcgc 399
               |||||||||||||||||||||
Sbjct: 2322538 ccgggacgccgcggacggcgc 2322558
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 215     ggccgccgcgctcgccgcgga 235
               |||||||||||||||||||||
Sbjct: 1382155 ggccgccgcgctcgccgcgga 1382135
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    ggccgccgcgctcgccgcgg 234
              ||||||||||||||||||||
Sbjct: 542327 ggccgccgcgctcgccgcgg 542346
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>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01,
             complete sequence
          Length = 173074

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   atggccgccgcgctcgccgc 232
             ||||||||||||||||||||
Sbjct: 67232 atggccgccgcgctcgccgc 67213
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 209     cgccatggccgccgcgctcgccgc 232
               |||| |||||||||||||||||||
Sbjct: 1442174 cgccctggccgccgcgctcgccgc 1442197
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     gccggtgacagcgcccgccg 48
              ||||||||||||||||||||
Sbjct: 953935 gccggtgacagcgcccgccg 953916
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    ggccgccgcgctcgccgcgg 234
              ||||||||||||||||||||
Sbjct: 719575 ggccgccgcgctcgccgcgg 719556
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>ref|XM_848999.1| PREDICTED: Canis familiaris similar to RIC3 protein (LOC611343),
           mRNA
          Length = 1163

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 209 cgccatggccgccgcgctcgccgc 232
           ||||||||||||||| ||||||||
Sbjct: 29  cgccatggccgccgccctcgccgc 6
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>ref|XM_743108.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g01410)
           partial mRNA
          Length = 1704

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 67  ctttttataccaccatccat 86
           ||||||||||||||||||||
Sbjct: 471 ctttttataccaccatccat 452
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>gb|AY162971.1| Micromonospora chersina dynemicin enediyne iterative type I
            polyketide synthase gene locus, partial sequence
          Length = 6653

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 210  gccatggccgccgcgctcgccgcg 233
            |||||| |||||||||||||||||
Sbjct: 3324 gccatgcccgccgcgctcgccgcg 3301
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     ccgcgctcgccgcggacctc 239
               ||||||||||||||||||||
Sbjct: 2279351 ccgcgctcgccgcggacctc 2279370
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>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29
          Length = 299050

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    cgccatggccgccgcgctcg 228
              ||||||||||||||||||||
Sbjct: 203145 cgccatggccgccgcgctcg 203126
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>emb|AJ632203.2| Streptomyces antibioticus oviedomycin biosynthetic gene cluster, strain
             ATCC 11891
          Length = 24720

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   cggtgaccgggacgccgcgg 392
             ||||||||||||||||||||
Sbjct: 11990 cggtgaccgggacgccgcgg 11971
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>emb|AL954258.2| Pan troglodytes chromosome 22 clone PTB-146D01 map 22q22.3, complete
              sequence
          Length = 185080

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 287    ggcgtggggcagcagcaggacggc 310
              ||||||||| ||||||||||||||
Sbjct: 153362 ggcgtgggggagcagcaggacggc 153385
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>emb|AJ621740.1| Gallus gallus GMCSF gene for granulocyte-macrophage colony-stimulating
             factor and IL3 gene for interleukin-3, BAC bCHORI92M14
             clone, contig 1
          Length = 54760

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    ccgtccgtccgtccactcca 65
             ||||||||||||||||||||
Sbjct: 16844 ccgtccgtccgtccactcca 16863
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>gb|AE005999.1| Caulobacter crescentus CB15 section 325 of 359 of the complete genome
          Length = 12079

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 209  cgccatggccgccgcgctcgccgc 232
            ||||||||||| ||||||||||||
Sbjct: 5516 cgccatggccgacgcgctcgccgc 5493
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>gb|AC152174.15| Gasterosteus aculeatus clone ch213-202d23, complete sequence
          Length = 174464

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    cgccgtccgtccgtccactc 63
             ||||||||||||||||||||
Sbjct: 66426 cgccgtccgtccgtccactc 66445
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>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete
             sequence
          Length = 152172

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 209   cgccatggccgccgcgctcgccgc 232
             |||||||||||||||| |||||||
Sbjct: 53140 cgccatggccgccgcggtcgccgc 53163
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>dbj|AB041960.1| TT virus DNA, complete genome, isolate:So-TTV2
          Length = 3371

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 atggccgccgcgctcgccgc 232
           ||||||||||||||||||||
Sbjct: 831 atggccgccgcgctcgccgc 850
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 209      cgccatggccgccgcgctcgccgc 232
                |||||||||||||||| |||||||
Sbjct: 19323241 cgccatggccgccgcggtcgccgc 19323218
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 213      atggccgccgcgctcgccgc 232
                ||||||||||||||||||||
Sbjct: 20395487 atggccgccgcgctcgccgc 20395468



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 212     catggccgccgcgctcgccg 231
               ||||||||||||||||||||
Sbjct: 4813244 catggccgccgcgctcgccg 4813263
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>gb|AF546156.1| Micromonospora chersinia UnbL (unbL), UnbV (unbV), UnbU (unbU), PksE
            (pksE), and TebC (tebC) genes, complete cds
          Length = 10136

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 210  gccatggccgccgcgctcgccgcg 233
            |||||| |||||||||||||||||
Sbjct: 6555 gccatgcccgccgcgctcgccgcg 6532
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>gb|AF151965.1|AF151965 Pseudomonas putida strain KT2440 proline dehydrogenase (putA) gene,
            complete cds
          Length = 5162

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 296  cagcagcaggacggcgaagg 315
            ||||||||||||||||||||
Sbjct: 3704 cagcagcaggacggcgaagg 3723
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>gb|AF153207.1|AF153207 Pseudomonas putida proline dehydrogenase (putA) and proline permease
            (putP) genes, complete cds
          Length = 8660

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  cagcagcaggacggcgaagg 315
            ||||||||||||||||||||
Sbjct: 1459 cagcagcaggacggcgaagg 1440
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>dbj|AK070291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052I10, full
           insert sequence
          Length = 1849

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 209 cgccatggccgccgcgctcgccgc 232
           |||||||||||||||| |||||||
Sbjct: 51  cgccatggccgccgcggtcgccgc 74
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>dbj|AK067277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099K07, full
           insert sequence
          Length = 1626

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 atggccgccgcgctcgccgc 232
           ||||||||||||||||||||
Sbjct: 69  atggccgccgcgctcgccgc 88
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>gb|AY109356.1| Zea mays CL604_1 mRNA sequence
          Length = 1502

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  cgccatggccgccgcgctcg 228
            ||||||||||||||||||||
Sbjct: 1357 cgccatggccgccgcgctcg 1338
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 296     cagcagcaggacggcgaagg 315
               ||||||||||||||||||||
Sbjct: 5633817 cagcagcaggacggcgaagg 5633836



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 200     ggcaccgggcgccatggccg 219
               ||||||||||||||||||||
Sbjct: 3177335 ggcaccgggcgccatggccg 3177354
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 209      cgccatggccgccgcgctcgccgc 232
                |||||||||||||||| |||||||
Sbjct: 19334517 cgccatggccgccgcggtcgccgc 19334494
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
             complete sequence
          Length = 187956

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   catggccgccgcgctcgccg 231
             ||||||||||||||||||||
Sbjct: 85652 catggccgccgcgctcgccg 85671


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,352,462
Number of Sequences: 3902068
Number of extensions: 2352462
Number of successful extensions: 77587
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74315
Number of HSP's gapped (non-prelim): 3272
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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