ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05e09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY579884.1| Hordeum vulgare AML6 mRNA, complete cds Length = 3269 Score = 285 bits (144), Expect = 2e-74 Identities = 147/148 (99%) Strand = Plus / Plus Query: 16 agagaaagcgtccttcttcctcctccccgactccggccggcgaggtcgggacggagctcc 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agagaaagcgtccttcttcctcctccccgactccggccggcgaggtcgggacggagctcc 60 Query: 76 gccgctccaccgagccgcggatcggtggcgtaggcagttgaggggctgaggaggtgaaag 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gccgctccaccgagccgcggatcggtggcgtaggcagttgaggggctgaggaggtgaaag 120 Query: 136 aaagaggctacgaaagcacccatggtga 163 |||||||| ||||||||||||||||||| Sbjct: 121 aaagaggcaacgaaagcacccatggtga 148
>gb|AC131741.4| Mus musculus BAC clone RP23-66E21 from 7, complete sequence Length = 193738 Score = 42.1 bits (21), Expect = 0.51 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 agaaagaggctacgaaagcac 154 ||||||||||||||||||||| Sbjct: 168638 agaaagaggctacgaaagcac 168658
>gb|AC122222.6| Mus musculus BAC clone RP23-128D11 from 7, complete sequence Length = 212225 Score = 42.1 bits (21), Expect = 0.51 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 agaaagaggctacgaaagcac 154 ||||||||||||||||||||| Sbjct: 38289 agaaagaggctacgaaagcac 38309
>gb|AC164086.3| Mus musculus BAC clone RP23-25E6 from chromosome 13, complete sequence Length = 214085 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 gggctgaggaggtgaaagaa 137 |||||||||||||||||||| Sbjct: 61096 gggctgaggaggtgaaagaa 61077
>emb|AL078634.24|HS1049G11 Human DNA sequence from clone RP5-1049G11 on chromosome 20p11.1-11.23 Contains part of the KIAA1272 gene for a protein similar to rat tulip proteins 1 and 2, the 5' part of the gene for a novel protein similar to eukaryotic translation initiation factor 4E-like 4 and part of a novel protein similar to fly CG552, complete sequence Length = 136168 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaggtgaaagaaagaggct 144 |||||||||||||||||||| Sbjct: 79792 ggaggtgaaagaaagaggct 79811
>gb|AC007920.18| Homo sapiens 3 BAC RP11-208N14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173534 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 agttgaggggctgaggaggt 130 |||||||||||||||||||| Sbjct: 42382 agttgaggggctgaggaggt 42363
>gb|AC116499.9| Mus musculus chromosome 8, clone RP24-294M17, complete sequence Length = 159272 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 gaggaggtgaaagaaagaggctac 146 |||||||||||||| ||||||||| Sbjct: 81974 gaggaggtgaaagagagaggctac 81997
>gb|AC084425.1|CBRG01B5 Caenorhabditis briggsae cosmid G01B5, complete sequence Length = 42310 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 gaggaggtgaaagaaagagg 142 |||||||||||||||||||| Sbjct: 25887 gaggaggtgaaagaaagagg 25868
>gb|AC147612.5| Mus musculus BAC clone RP23-374K9 from 6, complete sequence Length = 190156 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 tccttcttcctcctccccgactcc 49 |||||||||||||||||| ||||| Sbjct: 50500 tccttcttcctcctcccccactcc 50523
>emb|AL928706.6| Mouse DNA sequence from clone RP23-54E16 on chromosome 2, complete sequence Length = 205358 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ttgaggggctgaggaggtga 132 |||||||||||||||||||| Sbjct: 19619 ttgaggggctgaggaggtga 19638
>emb|AL512356.6|CNS07EF5 Human chromosome 14 DNA sequence BAC R-44N21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158467 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ggaggtgaaagaaagaggct 144 |||||||||||||||||||| Sbjct: 27560 ggaggtgaaagaaagaggct 27541
>ref|NM_184909.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1914 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 cttcttcctcctccccgac 46 ||||||||||||||||||| Sbjct: 1585 cttcttcctcctccccgac 1567
>gb|AC157211.7| Mus musculus chromosome 1, clone RP23-204C6, complete sequence Length = 206840 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 cagtgtatagagggagaga 20 ||||||||||||||||||| Sbjct: 82667 cagtgtatagagggagaga 82649
>gb|AC129942.7| Mus musculus chromosome 8, clone RP23-267A22, complete sequence Length = 175030 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 gaggtgaaagaaagaggct 144 ||||||||||||||||||| Sbjct: 109428 gaggtgaaagaaagaggct 109410
>gb|AE013148.1| Thermoanaerobacter tengcongensis MB4, section 175 of 244 of the complete genome Length = 10807 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 cttcttcctcctccccgac 46 ||||||||||||||||||| Sbjct: 4348 cttcttcctcctccccgac 4366
>ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfamily A (CYP2A) on chromosome 19 Length = 413528 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 120 gctgaggaggtgaaagaaagagg 142 ||||||||||| ||||||||||| Sbjct: 311222 gctgaggaggtaaaagaaagagg 311244
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 89 gccgcggatcggtggcgtaggca 111 |||||||||||||||||| |||| Sbjct: 177556 gccgcggatcggtggcgtcggca 177578
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 cttcttcctcctccccgac 46 ||||||||||||||||||| Sbjct: 31883737 cttcttcctcctccccgac 31883755
>gb|AC157789.5| Mus musculus chromosome 8, clone RP24-95E2, complete sequence Length = 203403 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 gaggtgaaagaaagaggct 144 ||||||||||||||||||| Sbjct: 175637 gaggtgaaagaaagaggct 175655
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 89 gccgcggatcggtggcgtaggca 111 |||||||||||||||||| |||| Sbjct: 1573052 gccgcggatcggtggcgtcggca 1573074
>emb|AL663016.5|OSJN00216 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A22, complete sequence Length = 131489 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 gtccttcttcctcctcccc 43 ||||||||||||||||||| Sbjct: 9781 gtccttcttcctcctcccc 9799
>gb|AC109583.2| Homo sapiens chromosome 3 clone RP11-427P5, complete sequence Length = 177251 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 ctcctccccgactccggcc 53 ||||||||||||||||||| Sbjct: 128771 ctcctccccgactccggcc 128753
>gb|AC009695.7| Homo sapiens chromosome 8, clone RP11-130C12, complete sequence Length = 144328 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 cttcctcctccccgactcc 49 ||||||||||||||||||| Sbjct: 38189 cttcctcctccccgactcc 38207
>gb|AC079943.18| Homo sapiens 3 BAC RP11-290K4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 139556 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 11 gagggagagaaagcgtccttctt 33 ||||||||||||| ||||||||| Sbjct: 38584 gagggagagaaagagtccttctt 38562
>emb|BX322538.9| Zebrafish DNA sequence from clone CH211-245G11 in linkage group 15, complete sequence Length = 159879 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 gtccttcttcctcctcccc 43 ||||||||||||||||||| Sbjct: 21445 gtccttcttcctcctcccc 21463
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 ttgaggggctgaggaggtg 131 ||||||||||||||||||| Sbjct: 1247964 ttgaggggctgaggaggtg 1247946
>dbj|AB006201.2| Homo sapiens gene for parathyroid hormone/parathyroid hormone-related protein receptor, exon 1, exon 2, exon 3, partial and complete sequence Length = 3045 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 ctcctccccgactccggcc 53 ||||||||||||||||||| Sbjct: 2542 ctcctccccgactccggcc 2524
>gb|AC073651.23| Homo sapiens 12 BAC RP11-6B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165565 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 ctgaggaggtgaaagaaag 139 ||||||||||||||||||| Sbjct: 59433 ctgaggaggtgaaagaaag 59451
>gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, complete sequence Length = 194729 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 ctcctccccgactccggcc 53 ||||||||||||||||||| Sbjct: 41139 ctcctccccgactccggcc 41121
>gb|U90325.1|CPU90325 Cyanophora paradoxa actin gene, partial cds Length = 1524 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 49 cggccggcgaggtcgggacggag 71 ||||||||||||||| ||||||| Sbjct: 719 cggccggcgaggtcgagacggag 697
>gb|AC016884.10| Homo sapiens chromosome , clone RP11-350M7, complete sequence Length = 209320 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 cttcttcctcctccccgac 46 ||||||||||||||||||| Sbjct: 145752 cttcttcctcctccccgac 145734
>gb|AF156157.1|AF156157 Schizophyllum commune actin 1 (ACT1) gene, complete cds Length = 2475 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 49 cggccggcgaggtcgggacggag 71 ||||||||||||||| ||||||| Sbjct: 1323 cggccggcgaggtcgagacggag 1301
>gb|DQ248314.1| Symbiotaphrina kochii voucher CBS 589.63 16S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 25S large subunit ribosomal RNA gene, partial sequence Length = 5938 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 tccggccggcgaggtcggg 65 ||||||||||||||||||| Sbjct: 4810 tccggccggcgaggtcggg 4828
>gb|AC008962.9| Homo sapiens chromosome 19 clone CTD-2356P16, complete sequence Length = 154169 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 120 gctgaggaggtgaaagaaagagg 142 ||||||||||| ||||||||||| Sbjct: 87478 gctgaggaggtaaaagaaagagg 87500
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 gtccttcttcctcctcccc 43 ||||||||||||||||||| Sbjct: 18046897 gtccttcttcctcctcccc 18046915
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 gtccttcttcctcctcccc 43 ||||||||||||||||||| Sbjct: 28010559 gtccttcttcctcctcccc 28010541
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 cttcttcctcctccccgac 46 ||||||||||||||||||| Sbjct: 31974253 cttcttcctcctccccgac 31974271
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 agcgtccttcttcctcctc 40 ||||||||||||||||||| Sbjct: 4190288 agcgtccttcttcctcctc 4190306
>gb|AC008178.3| Homo sapiens BAC clone RP11-551O2 from 2, complete sequence Length = 113367 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 cagtgtatagagggagaga 20 ||||||||||||||||||| Sbjct: 20165 cagtgtatagagggagaga 20183
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 7.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 73 tccgccgctccaccgagccgcggatcg 99 ||||||||||||||||| || |||||| Sbjct: 6935344 tccgccgctccaccgagtcgaggatcg 6935370
>gb|AC011890.4|AC011890 Homo sapiens PAC clone RP4-655L22 from Xq23, complete sequence Length = 158907 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 aggaggtgaaagaaagagg 142 ||||||||||||||||||| Sbjct: 68826 aggaggtgaaagaaagagg 68808
>gb|AC078845.2|AC078845 Homo sapiens chromosome 7 clone RP11-707A19, complete sequence Length = 161514 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 gaggtgaaagaaagaggct 144 ||||||||||||||||||| Sbjct: 1414 gaggtgaaagaaagaggct 1432
>dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0504A05 Length = 148360 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 agcgtccttcttcctcctc 40 ||||||||||||||||||| Sbjct: 7102 agcgtccttcttcctcctc 7120
>emb|BX276125.6| Zebrafish DNA sequence from clone CH211-212B14 in linkage group 19, complete sequence Length = 54430 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acagtgtatagagggagag 19 ||||||||||||||||||| Sbjct: 2867 acagtgtatagagggagag 2849
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 agcgtccttcttcctcctc 40 ||||||||||||||||||| Sbjct: 100302 agcgtccttcttcctcctc 100320
>gb|AE005135.1| Halobacterium sp. NRC-1 section 166 of 170 of the complete genome Length = 10922 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 tccggccggcgaggtcggg 65 ||||||||||||||||||| Sbjct: 9295 tccggccggcgaggtcggg 9277
>emb|AL844152.9| Zebrafish DNA sequence from clone DKEY-37L7, complete sequence Length = 180395 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 ttgaggggctgaggaggtg 131 ||||||||||||||||||| Sbjct: 150501 ttgaggggctgaggaggtg 150519
>emb|CR318628.8| Zebrafish DNA sequence from clone DKEY-148N22 in linkage group 19, complete sequence Length = 115655 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 acagtgtatagagggagag 19 ||||||||||||||||||| Sbjct: 93482 acagtgtatagagggagag 93500
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccggcgaggtcgggacgga 70 ||||||||||||||||||| Sbjct: 460622 ccggcgaggtcgggacgga 460640
>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208921 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 137 aagaggctacgaaagcacc 155 ||||||||||||||||||| Sbjct: 112520 aagaggctacgaaagcacc 112502
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 gtccttcttcctcctcccc 43 ||||||||||||||||||| Sbjct: 27985722 gtccttcttcctcctcccc 27985704
>gb|AF077526.1|AF077526 Homo sapiens parathyroid hormone-related protein receptor gene, partial cds Length = 3107 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 ctcctccccgactccggcc 53 ||||||||||||||||||| Sbjct: 1998 ctcctccccgactccggcc 1980
>gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complete sequence Length = 207908 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 137 aagaggctacgaaagcacc 155 ||||||||||||||||||| Sbjct: 192730 aagaggctacgaaagcacc 192712
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete sequence Length = 150663 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 cttcttcctcctccccgac 46 ||||||||||||||||||| Sbjct: 84990 cttcttcctcctccccgac 85008
>gb|M21635.1|DUKFASA Duck (A.platyrhynchos) S-acyl fatty acid synthase thioesterase gene, complete cds Length = 9138 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 49 cggccggcgaggtcgggacggag 71 ||||||||||||||||| ||||| Sbjct: 433 cggccggcgaggtcggggcggag 455 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,812,232 Number of Sequences: 3902068 Number of extensions: 1812232 Number of successful extensions: 181966 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 180969 Number of HSP's gapped (non-prelim): 997 length of query: 163 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 141 effective length of database: 17,147,199,772 effective search space: 2417755167852 effective search space used: 2417755167852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
