ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05e06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3111 Score = 492 bits (248), Expect = e-136 Identities = 329/356 (92%) Strand = Plus / Plus Query: 133 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 192 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 246 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 305 Query: 193 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 252 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 306 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 365 Query: 253 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 312 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 366 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 425 Query: 313 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 372 ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| Sbjct: 426 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 485 Query: 373 ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 432 ||||||||||||||| ||||||||||| ||||| ||| | | |||||||||||||||||| Sbjct: 486 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 545 Query: 433 catctgccagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcg 488 |||||||||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 546 catctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcg 601
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 492 bits (248), Expect = e-136 Identities = 329/356 (92%) Strand = Plus / Minus Query: 133 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 192 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 10025978 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 10025919 Query: 193 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 252 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 10025918 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 10025859 Query: 253 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 312 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 10025858 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 10025799 Query: 313 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 372 ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| Sbjct: 10025798 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 10025739 Query: 373 ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 432 ||||||||||||||| ||||||||||| ||||| ||| | | |||||||||||||||||| Sbjct: 10025738 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 10025679 Query: 433 catctgccagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcg 488 |||||||||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 10025678 catctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcg 10025623
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 492 bits (248), Expect = e-136 Identities = 329/356 (92%) Strand = Plus / Minus Query: 133 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 192 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 106260 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 106201 Query: 193 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 252 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 106200 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 106141 Query: 253 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 312 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 106140 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 106081 Query: 313 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 372 ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| Sbjct: 106080 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 106021 Query: 373 ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 432 ||||||||||||||| ||||||||||| ||||| ||| | | |||||||||||||||||| Sbjct: 106020 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 105961 Query: 433 catctgccagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcg 488 |||||||||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 105960 catctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcg 105905
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 492 bits (248), Expect = e-136 Identities = 329/356 (92%) Strand = Plus / Minus Query: 133 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 192 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 120471 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 120412 Query: 193 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 252 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 120411 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 120352 Query: 253 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 312 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 120351 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 120292 Query: 313 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 372 ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| Sbjct: 120291 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 120232 Query: 373 ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 432 ||||||||||||||| ||||||||||| ||||| ||| | | |||||||||||||||||| Sbjct: 120231 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 120172 Query: 433 catctgccagaatctccgcaacaacctgcagcaccccaatgagtacatccgcggcg 488 |||||||||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 120171 catctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcg 120116
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 367 bits (185), Expect = 2e-98 Identities = 307/347 (88%), Gaps = 3/347 (0%) Strand = Plus / Minus Query: 143 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 202 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 21373 Query: 203 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 262 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 21372 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 21313 Query: 263 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 322 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 21312 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 21253 Query: 323 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 382 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 21252 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 21193 Query: 383 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 439 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 21192 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 21133 Query: 440 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcgg 486 ||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 21132 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcgg 21086
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 367 bits (185), Expect = 2e-98 Identities = 307/347 (88%), Gaps = 3/347 (0%) Strand = Plus / Minus Query: 143 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 202 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170838 Query: 203 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 262 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 170837 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 170778 Query: 263 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 322 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 170777 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 170718 Query: 323 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 382 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 170717 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 170658 Query: 383 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 439 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 170657 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 170598 Query: 440 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcgg 486 ||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 170597 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcgg 170551
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 367 bits (185), Expect = 2e-98 Identities = 307/347 (88%), Gaps = 3/347 (0%) Strand = Plus / Minus Query: 143 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 202 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3653701 Query: 203 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 262 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 3653700 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3653641 Query: 263 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 322 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 3653640 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 3653581 Query: 323 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 382 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 3653580 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 3653521 Query: 383 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 439 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 3653520 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 3653461 Query: 440 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcgg 486 ||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 3653460 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcgg 3653414
>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full insert sequence Length = 1667 Score = 367 bits (185), Expect = 2e-98 Identities = 307/347 (88%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 143 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 202 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 75 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 134 Query: 203 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 262 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 135 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 194 Query: 263 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 322 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 195 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 254 Query: 323 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 382 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 255 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 314 Query: 383 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 439 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 315 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 374 Query: 440 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcgg 486 ||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 375 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcgg 421
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full insert sequence Length = 3363 Score = 367 bits (185), Expect = 2e-98 Identities = 307/347 (88%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 143 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 202 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 201 Query: 203 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 262 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 202 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 261 Query: 263 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 322 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 262 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 321 Query: 323 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 382 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 322 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 381 Query: 383 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 439 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 382 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 441 Query: 440 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcgg 486 ||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 442 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcgg 488
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 367 bits (185), Expect = 2e-98 Identities = 307/347 (88%), Gaps = 3/347 (0%) Strand = Plus / Minus Query: 143 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 202 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3662395 Query: 203 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 262 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 3662394 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3662335 Query: 263 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 322 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 3662334 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 3662275 Query: 323 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 382 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 3662274 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 3662215 Query: 383 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 439 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 3662214 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 3662155 Query: 440 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcgg 486 ||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 3662154 cagaacctccgcaacaacctccagcaccccaacgagtacatccgcgg 3662108
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full insert sequence Length = 3332 Score = 359 bits (181), Expect = 6e-96 Identities = 306/347 (88%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 143 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 202 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170 Query: 203 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 262 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230 Query: 263 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 322 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 290 Query: 323 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 382 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 291 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 350 Query: 383 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 439 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 351 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 410 Query: 440 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcgg 486 | ||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 411 ctgaacctccgcaacaacctccagcaccccaacgagtacatccgcgg 457
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full insert sequence Length = 3332 Score = 359 bits (181), Expect = 6e-96 Identities = 306/347 (88%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 143 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 202 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170 Query: 203 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 262 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230 Query: 263 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 322 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 290 Query: 323 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 382 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 291 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 350 Query: 383 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 439 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 351 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 410 Query: 440 cagaatctccgcaacaacctgcagcaccccaatgagtacatccgcgg 486 | ||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 411 ctgaacctccgcaacaacctccagcaccccaacgagtacatccgcgg 457
>dbj|AB080596.1| Botryococcus braunii bCOP mRNA for coatomer subunit beta, complete cds Length = 3313 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 422 gagatgatcctcatctgccagaatctccgcaacaacctgcagcaccccaatgagtacatc 481 |||||||| || || |||||||| || |||||||||||||||||||| || ||||||||| Sbjct: 484 gagatgattctgatttgccagaacctgcgcaacaacctgcagcacccgaacgagtacatc 543 Query: 482 cg 483 || Sbjct: 544 cg 545
>ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490 mRNA, complete cds Length = 3306 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 437 tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 483 ||||||||||| || || ||||| ||||| || |||||||||||||| Sbjct: 410 tgccagaatcttcgtaataaccttcagcatccgaatgagtacatccg 456
>ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480 mRNA, complete cds Length = 3296 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 437 tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 483 ||||||||||| || || ||||| ||||| || |||||||||||||| Sbjct: 361 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccg 407
>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project) Length = 94319 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 437 tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 483 ||||||||||| || || ||||| ||||| || |||||||||||||| Sbjct: 47630 tgccagaatcttcgtaataaccttcagcatccgaatgagtacatccg 47676 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 437 tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 483 ||||||||||| || || ||||| ||||| || |||||||||||||| Sbjct: 42315 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccg 42361
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 437 tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 483 ||||||||||| || || ||||| ||||| || |||||||||||||| Sbjct: 35695 tgccagaatcttcgtaataaccttcagcatccgaatgagtacatccg 35741 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 437 tgccagaatctccgcaacaacctgcagcaccccaatgagtacatccg 483 ||||||||||| || || ||||| ||||| || |||||||||||||| Sbjct: 30380 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccg 30426
>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 tcgacaagggctccgccgccat 198 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 tcgacaagggctccgccgccat 198 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>emb|X80052.1|NCFOX2 N.crassa fox-2 gene Length = 3401 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 tcgacaagggctccgccgccat 198 |||||||||||||||||||||| Sbjct: 2665 tcgacaagggctccgccgccat 2686
>ref|XM_544073.2| PREDICTED: Canis familiaris similar to CG12002-PA, isoform A (LOC486944), mRNA Length = 3891 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 450 gcaacaacctgcagcacccca 470 ||||||||||||||||||||| Sbjct: 1685 gcaacaacctgcagcacccca 1705
>gb|AE005990.1| Caulobacter crescentus CB15 section 316 of 359 of the complete genome Length = 10324 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 216 cggatctggagggcagcgacgtcgccgcc 244 |||||||| ||||| |||||||||||||| Sbjct: 542 cggatctgcagggcggcgacgtcgccgcc 514 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 ctggagggcagcgacgtcgccgcc 244 ||||||||| |||||||||||||| Sbjct: 508 ctggagggcggcgacgtcgccgcc 531
>ref|XM_693623.1| PREDICTED: Danio rerio similar to CG12002-PA, isoform A (LOC570177), mRNA Length = 2301 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 450 gcaacaacctgcagcacccca 470 ||||||||||||||||||||| Sbjct: 146 gcaacaacctgcagcacccca 166
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 277 cctcctcaatggcgagaccctgccg 301 |||||||||||||||||| |||||| Sbjct: 7448022 cctcctcaatggcgagactctgccg 7448046
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tcgccgccaaggtcgaggcca 257 ||||||||||||||||||||| Sbjct: 4038174 tcgccgccaaggtcgaggcca 4038194
>gb|BC072525.1| Rattus norvegicus paralemmin, mRNA (cDNA clone MGC:91516 IMAGE:7097177), complete cds Length = 2635 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 aggaccacaccatccagaag 361 |||||||||||||||||||| Sbjct: 886 aggaccacaccatccagaag 905
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gccgccaaggtcgaggccat 258 |||||||||||||||||||| Sbjct: 2893165 gccgccaaggtcgaggccat 2893146
>ref|NM_130829.1| Rattus norvegicus paralemmin (Palm), mRNA Length = 2571 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 aggaccacaccatccagaag 361 |||||||||||||||||||| Sbjct: 845 aggaccacaccatccagaag 864
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cgccgtcgccctccggcgcg 123 |||||||||||||||||||| Sbjct: 612231 cgccgtcgccctccggcgcg 612250
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ccaaggtcgaggccatgaag 262 |||||||||||||||||||| Sbjct: 1720007 ccaaggtcgaggccatgaag 1720026 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ccaaggtcgaggccatgaag 262 |||||||||||||||||||| Sbjct: 728522 ccaaggtcgaggccatgaag 728541
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tcctcaatggcgagaccctg 298 |||||||||||||||||||| Sbjct: 4156014 tcctcaatggcgagaccctg 4156033
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gatcaaggcggatctggagg 227 |||||||||||||||||||| Sbjct: 1763887 gatcaaggcggatctggagg 1763868
>gb|AC131405.5| Rattus norvegicus BAC CH230-179I7 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 217197 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 aggaccacaccatccagaag 361 |||||||||||||||||||| Sbjct: 142948 aggaccacaccatccagaag 142929
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 cgtcgccgccaaggtcgagg 254 |||||||||||||||||||| Sbjct: 4994308 cgtcgccgccaaggtcgagg 4994327
>gb|DQ184948.1| Malus x domestica putative receptor kinase (DIPM1) mRNA, complete cds Length = 2440 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 cgtcgtccgctacgtcctcc 335 |||||||||||||||||||| Sbjct: 265 cgtcgtccgctacgtcctcc 284
>gb|AY103647.1| Zea mays PCO142084 mRNA sequence Length = 2598 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tgccgctggccgcgtcctcc 419 |||||||||||||||||||| Sbjct: 1826 tgccgctggccgcgtcctcc 1807
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ccaaggtcgaggccatgaag 262 |||||||||||||||||||| Sbjct: 759001 ccaaggtcgaggccatgaag 759020
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gcgacgtcgccgccaaggtc 250 |||||||||||||||||||| Sbjct: 1266036 gcgacgtcgccgccaaggtc 1266017
>dbj|AB058889.1| Rattus norvegicus mRNA for paralemmin, complete cds Length = 2571 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 aggaccacaccatccagaag 361 |||||||||||||||||||| Sbjct: 845 aggaccacaccatccagaag 864 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,714,764 Number of Sequences: 3902068 Number of extensions: 2714764 Number of successful extensions: 52344 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51369 Number of HSP's gapped (non-prelim): 967 length of query: 488 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 466 effective length of database: 17,147,199,772 effective search space: 7990595093752 effective search space used: 7990595093752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
