ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl05e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 169 3e-42
2HOMEZ_MOUSE (Q80W88) Homeobox and leucine zipper protein Homez (... 31 1.4
3PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiestera... 30 4.1
4HOMEZ_RAT (Q8K3E9) Homeobox and leucine zipper protein Homez (Ho... 29 5.4
5SYA_WOLTR (Q5GSS5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 28 9.2
6STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.... 28 9.2

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score =  169 bits (428), Expect = 3e-42
 Identities = 86/106 (81%), Positives = 91/106 (85%)
 Frame = +3

Query: 156 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHFET 335
           MTTDQPVISL             LFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLH E+
Sbjct: 1   MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHSES 60

Query: 336 RERIRYSRDQLLDLRKITDISEQILRPQQEIEAELHGDDQSWVRND 473
           RER+RYSRDQLLDLRKITD++EQILR QQEIEAEL+GDDQSWVRND
Sbjct: 61  RERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSWVRND 106



to top

>HOMEZ_MOUSE (Q80W88) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 518

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDISEQILRPQQE 425
           G+S   +   ETR R+ Y RDQLL  + +   ++Q +RP QE
Sbjct: 87  GISWSSEEIEETRARVVYHRDQLL-FKSLLSFTQQSVRPPQE 127



to top

>PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiesterase (EC|
           3.1.4.17) (Cyclic GMP-stimulated phosphodiesterase)
           (CGS-PDE) (cGSPDE)
          Length = 941

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 11  RSQTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSSCRGALVGFGTL 151
           RSQ  P   P E   +++ FL+   P  PP PC  S + AL+  G++
Sbjct: 12  RSQQYPAARPAEPRGQQV-FLKPDEPPPPPQPCADSLQDALLSLGSV 57



to top

>HOMEZ_RAT (Q8K3E9) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 513

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 300 GVSRIGDLHFETRERIRYSRDQLLDLRKITDISEQILRPQQEI 428
           G+S   +   ETR R+ Y RDQLL  + +   +   +RP QE+
Sbjct: 87  GISWSSEEIEETRARVVYHRDQLL-FKSLLSFTHHAVRPPQEM 128



to top

>SYA_WOLTR (Q5GSS5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 875

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 21/49 (42%), Positives = 28/49 (57%)
 Frame = +3

Query: 294 ASGVSRIGDLHFETRERIRYSRDQLLDLRKITDISEQILRPQQEIEAEL 440
           ASGV RI  L    +E I Y+RD  ++LRK   I+E +  P  EI + L
Sbjct: 704 ASGVRRIEAL--TGQEAIDYARDNEINLRK---IAELVKAPVNEITSRL 747



to top

>STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.11.1) (pEg2)|
           (p46Eg265)
          Length = 407

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   GERSQTEPNPPPREEGKKKLGFLRDFLPGAP 97
           G   Q + +  P+EEGKKK   L DF  G P
Sbjct: 115 GSTDQGKTSAVPKEEGKKKQWCLEDFEIGRP 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,093,300
Number of Sequences: 219361
Number of extensions: 812195
Number of successful extensions: 3195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3194
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top