>NDF2_RAT (Q63689) Neurogenic differentiation factor 2 (NeuroD2) (Brain bHLH|
           protein KW8)
          Length = 382

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 278 LWGGSQHQQPKHGFCKA--TLYERGAGGG 358
           L GG+ H    HG+C A  TLY    GGG
Sbjct: 257 LGGGAAHALRTHGYCAAYETLYAAAGGGG 285

>NDF2_HUMAN (Q15784) Neurogenic differentiation factor 2 (NeuroD2)|
           (NeuroD-related factor) (NDRF)
          Length = 382

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 278 LWGGSQHQQPKHGFCKA--TLYERGAGGG 358
           L GG+ H    HG+C A  TLY    GGG
Sbjct: 257 LGGGAAHALRTHGYCAAYETLYAAAGGGG 285

>NDF2_MOUSE (Q62414) Neurogenic differentiation factor 2 (NeuroD2)|
           (NeuroD-related factor) (NDRF)
          Length = 383

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 278 LWGGSQHQQPKHGFCKA--TLYERGAGGG 358
           L GG+ H    HG+C A  TLY    GGG
Sbjct: 258 LGGGAAHALRTHGYCAAYETLYAAAGGGG 286

>RGYR_PYRAE (Q8ZXT5) Reverse gyrase [Includes: Helicase (EC 3.6.1.-);|
           Topoisomerase (EC 5.99.1.3)]
          Length = 1228

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -1

Query: 347 PLFRKVWLCRSHALVADVD----CRPTVVFASV 261
           P++ K+W CR    V D+D    C+P  V  ++
Sbjct: 731 PVYNKIWRCRGAVYVDDIDIPPGCKPLDVLEAI 763

>SEC16_YEAST (P48415) Multidomain vesicle coat protein|
          Length = 2195

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 219  GSKRARKAMPLSEPHRGKDNCGAAVNISNQSMASAKPHFTKEGP 350
            G+K ++K+MP  E H   DN  A  N    S          EGP
Sbjct: 1665 GNKHSQKSMPEDESHTSHDNSNADQNTLKDSADVTDETMDIEGP 1708

>SR4_PHYPO (P11113) Spherulin-4 precursor|
          Length = 332

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 281 WGGSQHQQPKHGFCKATLYERGAGGGGVHSLRA 379
           W GS+H  P     +A    RG GGGG H+  A
Sbjct: 21  WHGSKHHNPTKAPTEAP--HRGGGGGGGHNTPA 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,176,448
Number of Sequences: 219361
Number of extensions: 552435
Number of successful extensions: 1718
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)