>gb|AE005079.1| Halobacterium sp. NRC-1 section 110 of 170 of the complete genome
          Length = 12797

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 226  agagggcgaggaaggcgatgccgctg 251
            |||||||||||||||||||| |||||
Sbjct: 5369 agagggcgaggaaggcgatggcgctg 5394

>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence
          Length = 210614

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 31     gggaggcgatgctgcgcggcg 51
              |||||||||||||||||||||
Sbjct: 127404 gggaggcgatgctgcgcggcg 127384

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 373     gcgcgcccagcatcgtcgcga 393
               |||||||||||||||||||||
Sbjct: 3426994 gcgcgcccagcatcgtcgcga 3426974



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 41      gctgcgcggcggcgccggac 60
               ||||||||||||||||||||
Sbjct: 2094345 gctgcgcggcggcgccggac 2094364

>dbj|AB021222.1| Streptomyces rochei type-II polyketide synthase genes, partial and
            complete cds
          Length = 4767

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 31   gggaggcgatgctgcgcggcg 51
            |||||||||||||||||||||
Sbjct: 1956 gggaggcgatgctgcgcggcg 1976

>ref|XM_468485.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 399

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 42 ctgcgcggcggcgccggacc 61
          ||||||||||||||||||||
Sbjct: 70 ctgcgcggcggcgccggacc 89

>ref|XM_477050.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 465

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 342 gaggggccggaggaggtggagttc 365
           |||| |||||||||||||||||||
Sbjct: 205 gaggagccggaggaggtggagttc 228

>gb|AC125273.9| Mus musculus chromosome 1, clone RP24-156N4, complete sequence
          Length = 187198

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    cacatttgagttctagagag 219
              ||||||||||||||||||||
Sbjct: 164017 cacatttgagttctagagag 163998

>gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome 13, complete sequence
          Length = 170866

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   gaggctgatgggccttgaca 411
             ||||||||||||||||||||
Sbjct: 58638 gaggctgatgggccttgaca 58657

>emb|CR956646.4| Pig DNA sequence from clone CH242-247L10 on chromosome 17, complete
              sequence
          Length = 171329

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     agggggaggcgatgctgcgc 47
              ||||||||||||||||||||
Sbjct: 165329 agggggaggcgatgctgcgc 165348

>emb|AL389916.15| Human DNA sequence from clone RP11-470J18 on chromosome 10, complete
             sequence
          Length = 68567

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   aaagcatggcttctgcaaag 326
             ||||||||||||||||||||
Sbjct: 33028 aaagcatggcttctgcaaag 33047

>gb|AC157921.5| Mus musculus chromosome 1, clone RP23-129L19, complete sequence
          Length = 220521

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  cacatttgagttctagagag 219
            ||||||||||||||||||||
Sbjct: 3778 cacatttgagttctagagag 3797

>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     atgctgcgcggcggcgccgg 58
              ||||||||||||||||||||
Sbjct: 174251 atgctgcgcggcggcgccgg 174232

>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     atgctgcgcggcggcgccgg 58
              ||||||||||||||||||||
Sbjct: 119060 atgctgcgcggcggcgccgg 119079

>gb|BC028691.2| Homo sapiens karyopherin alpha 4 (importin alpha 3), mRNA (cDNA
           clone MGC:26508 IMAGE:4838709), complete cds
          Length = 3815

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ggcaaagacaactgtggggc 286
           ||||||||||||||||||||
Sbjct: 42  ggcaaagacaactgtggggc 23

>gb|BC034493.2| Homo sapiens karyopherin alpha 4 (importin alpha 3), mRNA (cDNA
           clone MGC:26703 IMAGE:4821602), complete cds
          Length = 3816

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ggcaaagacaactgtggggc 286
           ||||||||||||||||||||
Sbjct: 97  ggcaaagacaactgtggggc 78

>gb|AC078868.14| Homo sapiens 3 BAC RP11-758B20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 177301

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   ggcaaagacaactgtggggc 286
             ||||||||||||||||||||
Sbjct: 79320 ggcaaagacaactgtggggc 79339

>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 34      aggcgatgctgcgcggcggcgccg 57
               |||||||||||||||||| |||||
Sbjct: 4666000 aggcgatgctgcgcggcgacgccg 4665977

>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence
          Length = 176095

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    gaggaatcctctttcacatt 205
              ||||||||||||||||||||
Sbjct: 111457 gaggaatcctctttcacatt 111476

>ref|NM_002268.3| Homo sapiens karyopherin alpha 4 (importin alpha 3) (KPNA4), mRNA
          Length = 3816

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ggcaaagacaactgtggggc 286
           ||||||||||||||||||||
Sbjct: 97  ggcaaagacaactgtggggc 78

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 36      gcgatgctgcgcggcggcgc 55
               ||||||||||||||||||||
Sbjct: 2432802 gcgatgctgcgcggcggcgc 2432783

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 342     gaggggccggaggaggtggagttc 365
               |||| |||||||||||||||||||
Sbjct: 5599032 gaggagccggaggaggtggagttc 5599055

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 42       ctgcgcggcggcgccggacc 61
                ||||||||||||||||||||
Sbjct: 35481537 ctgcgcggcggcgccggacc 35481518

>gb|AE004794.1| Pseudomonas aeruginosa PAO1, section 355 of 529 of the complete
           genome
          Length = 13621

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 gggcgaggaaggcgatgccg 248
           ||||||||||||||||||||
Sbjct: 405 gggcgaggaaggcgatgccg 386

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 45      cgcggcggcgccggaccgcgtggaggag 72
               |||||||||||||||||| |||| ||||
Sbjct: 1742651 cgcggcggcgccggaccgggtggtggag 1742624

>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0081K20
          Length = 117287

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 342    gaggggccggaggaggtggagttc 365
              |||| |||||||||||||||||||
Sbjct: 112117 gaggagccggaggaggtggagttc 112140

>dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1063_D06
          Length = 102439

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    ctgcgcggcggcgccggacc 61
             ||||||||||||||||||||
Sbjct: 93058 ctgcgcggcggcgccggacc 93039

>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0431A02
          Length = 165038

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 342   gaggggccggaggaggtggagttc 365
             |||| |||||||||||||||||||
Sbjct: 60724 gaggagccggaggaggtggagttc 60747

>dbj|AP002515.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-3159I7, complete
              sequences
          Length = 166063

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    cacatttgagttctagagag 219
              ||||||||||||||||||||
Sbjct: 129624 cacatttgagttctagagag 129605

>emb|BX897744.17| Zebrafish DNA sequence from clone DKEY-168A10 in linkage group 3,
              complete sequence
          Length = 144823

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    ccaaagcatggcttctgcaa 324
              ||||||||||||||||||||
Sbjct: 125292 ccaaagcatggcttctgcaa 125273


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,687,543
Number of Sequences: 3902068
Number of extensions: 3687543
Number of successful extensions: 69296
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68707
Number of HSP's gapped (non-prelim): 589
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)