Clone Name | bastl05e03 |
---|---|
Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 176 bits (446), Expect(2) = 4e-44 Identities = 89/112 (79%), Positives = 89/112 (79%) Frame = +3 Query: 141 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPGNGRRTSVSKVGXXXXXXXXXXXXXL 320 MLTATKPLVGGAC TFVVPEARRKPGNGRRTSVSKVG L Sbjct: 1 MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTL 60 Query: 321 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRDFLYDLILK 476 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRDFLYDLILK Sbjct: 61 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRDFLYDLILK 112 Score = 21.2 bits (43), Expect(2) = 4e-44 Identities = 7/8 (87%), Positives = 8/8 (100%) Frame = +2 Query: 473 QTWLHVDL 496 +TWLHVDL Sbjct: 112 KTWLHVDL 119
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 64.3 bits (155), Expect = 2e-10 Identities = 48/119 (40%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Frame = +3 Query: 141 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPG-NGRRTSVSKVGXXXXXXXXXXXXX 317 M TATKPLVG +F+V EARRKP N RRT V Sbjct: 1 MQTATKPLVGARAVPLSRRA---SFLVAEARRKPSTNARRTRVGSTSTTTTTTT------ 51 Query: 318 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHM-------SKAAGVRDFLYDLIL 473 + D NG A+ TV +P H D EMKATV+VHM K RD+ YDLIL Sbjct: 52 ILTDVNGPALTTVAKPG-HQYDLKQTVEMKATVSVHMKSFWWSDEKKERARDWAYDLIL 109
>SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 436 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +3 Query: 318 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGV 446 ++ + A + TRPD++V +R E A V H +AAG+ Sbjct: 320 INPSGSAARLRASTRPDLYVVNRGEQAERVALVIAHQLRAAGL 362
>SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit (Sodium| channel protein type X alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.8) (Peripheral nerve sodium channel 3) (Sensory neuron sodium channel) Length = 1956 Score = 29.6 bits (65), Expect = 4.6 Identities = 17/55 (30%), Positives = 22/55 (40%) Frame = +2 Query: 62 LGRNQPRRCNLPPHRVAQ*PTP*RTHDADGDQAASRGRVCRAVVVGPAEDVRGAR 226 LGR + LP + Q P P R H +G G + GPA D G + Sbjct: 538 LGRGAGQTGPLPRSPLPQSPNPGRRHGEEGQLGVPTGELTAGAPEGPALDTTGQK 592
>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) Length = 1200 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = -2 Query: 240 VSGEPRAPRTSSAGPTTTARHTRPRLAAWSPSA 142 +S EPR PR S+ RH RP L A P A Sbjct: 71 LSREPRGPRALSSFVRDARRHPRPALTASPPPA 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,051,212 Number of Sequences: 219361 Number of extensions: 1072532 Number of successful extensions: 3052 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2982 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3050 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)