>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 34   PFAS*LTNHSAAMFSPPAQ--PRFDPLRPTSPTS*PFIAPSCYLRQRRQVRPPAATHPMR 207
            P +S  T+H  +   PP Q  P+  PL P+SP   P       L Q + + PPAA+HP  
Sbjct: 963  PLSSLSTHHPPSAHPPPLQLMPQSQPL-PSSPAQPPG------LTQSQSLPPPAASHPTT 1015

Query: 208  PLVQFAGASP 237
             L Q    SP
Sbjct: 1016 GLHQVPSQSP 1025

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +1

Query: 34   PFAS*LTNHSAAMFSPPAQ--PRFDPLRPTSPTS*PFIAPSCYLRQRRQVRPPAATHPMR 207
            P +S  T+H  +   PP Q  P+  PL P+SP   P       L Q + + PP A+HP  
Sbjct: 971  PLSSLSTHHPPSAHPPPLQLMPQSQPL-PSSPAQPPG------LTQSQNLPPPPASHPPT 1023

Query: 208  PLVQFAGASP 237
             L Q A   P
Sbjct: 1024 GLHQVAPQPP 1033

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 34   PFAS*LTNHSAAMFSPPAQ--PRFDPLRPTSPTS*PFIAPSCYLRQRRQVRPPAATHP 201
            P +S  T+H  +   PP Q  P+  PL P+SP   P       L Q + + PPAA+HP
Sbjct: 962  PLSSLSTHHPPSAHPPPLQLMPQSQPL-PSSPAQPPG------LTQSQSLPPPAASHP 1012

>S23IP_HUMAN (Q9Y6Y8) SEC23-interacting protein (p125)|
          Length = 1000

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
 Frame = +1

Query: 88  QPRFDPLR--PTSPTS*PFIAPSCYLRQRRQVRPPAATHPMRPLVQFAGASPGN*VXXXX 261
           QP ++P R  P S  + P+IAP   L+Q +   PPA   P  P VQ     PG+      
Sbjct: 177 QPGYNPYRHTPGSSRANPYIAPP-QLQQCQTPGPPAHPPPSGPPVQMYQMPPGSLPPVPS 235

Query: 262 XXXXP----FPVSPGCLEDQLLSVYRSKN 336
               P     P  PG    Q+ S +  +N
Sbjct: 236 SVQSPAQQQVPARPGAPSVQVPSPFLLQN 264

>ERC2_RAT (Q8K3M6) ERC protein 2 (CAZ-associated structural protein 1)|
           (CAST1) (Cast) (Cytomatrix protein p110)
          Length = 957

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 243 LGGRSHHHHHPVSCLTRLPGGSTAFRL 323
           LGG SHHHHH V  + R    ST   L
Sbjct: 124 LGGSSHHHHHQVPSMLRQVRDSTMLDL 150

>RAD50_METKA (Q8TXI4) DNA double-strand break repair rad50 ATPase|
          Length = 876

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 147 RCDEWLARR*GGAQGVESGLRR---RREHGGAVVRELGGEGEK 28
           RC++ + R   G + VE  LRR    R+H G  +RE  GE E+
Sbjct: 565 RCEKVIGRTPSGVEDVEEELRRLEEERDHVGQKLREAEGELER 607

>RCOR2_BRARE (Q6P116) REST corepressor 2|
          Length = 536

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +1

Query: 55  NHSAAMFSPPAQPRFDPLRPTSPTS*PFIAPSCYLRQ--RRQVRP----PAATHPMRPLV 216
           NHS+A  SPP       LRP  P+     AP   LRQ    Q RP        HP  PL+
Sbjct: 440 NHSSAQSSPPLTQPPPLLRPAPPS-----APPSLLRQPPPLQTRPLQNRTPHNHPPPPLI 494

Query: 217 QFAGAS 234
           + A AS
Sbjct: 495 RPAIAS 500

>PMK3_CAEEL (O44514) Mitogen-activated protein kinase pmk-3 (EC 2.7.11.24) (p38|
           MAP kinase 3) (Stress-activated protein kinase pmk-3)
          Length = 474

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 77  LRRRSPDSTPCAPPHRRANHSSHLPVIYD 163
           +RR    STP APP +R+N+ S  P  Y+
Sbjct: 15  VRRHEDVSTPSAPPTKRSNNQSQPPESYE 43

>AMEL_TACAC (O97647) Amelogenin (Fragment)|
          Length = 121

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/56 (30%), Positives = 21/56 (37%)
 Frame = +1

Query: 52  TNHSAAMFSPPAQPRFDPLRPTSPTS*PFIAPSCYLRQRRQVRPPAATHPMRPLVQ 219
           T H  +    P Q  F P  P  PT              R ++P A  HPM P+ Q
Sbjct: 52  TQHHQSNLPQPGQQPFQPQFPQKPT-------------HRPIQPQAPVHPMPPMPQ 94

>SOS2_MOUSE (Q02384) Son of sevenless homolog 2 (SOS-2) (mSOS-2) (Fragment)|
          Length = 1297

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 76   SPPAQPRFDPLRPTSPTS*PFIAPSCYLRQRRQVRPPAATHPMR 207
            SPP  P  DPL P +P   P   P  ++     ++PP   HP R
Sbjct: 1167 SPPPPPPRDPL-PDTPPPVPLRPPEHFINCPFNLQPPPLGHPHR 1209

>VL2_HPV67 (O90729) Minor capsid protein L2|
          Length = 465

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
 Frame = +1

Query: 10  PGLADFFFPFAS*LTNHSAAMFSPPAQPRFDPLRPTSPTS*PF-----------IAPSCY 156
           P  + F FPF+S +          P  P + P  P  PTS PF           + PS +
Sbjct: 388 PLSSGFDFPFSSTVPLQPGPDIVSPVAPTYTPFVPVIPTS-PFNNVLVYGSDFILHPSYF 446

Query: 157 LRQRRQVRP 183
           LR+RR+  P
Sbjct: 447 LRRRRKRFP 455

>AHM2_ARATH (O64474) Putative cadmium/zinc-transporting ATPase 2 (EC 3.6.3.3) (EC|
            3.6.3.5)
          Length = 1172

 Score = 25.4 bits (54), Expect(2) = 4.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 225  RCVARELGGRSHHHHH 272
            R  A+EL    HHHHH
Sbjct: 1148 RSYAKELCSHRHHHHH 1163



 Score = 22.3 bits (46), Expect(2) = 4.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 258  HHHHHPVS 281
            HHHHH VS
Sbjct: 1164 HHHHHHVS 1171

>ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural protein 1)|
           (CAST1)
          Length = 957

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 243 LGGRSHHHHHPVSCLTRLPGGSTAFRL 323
           L G SHHHHH V  + R    ST   L
Sbjct: 124 LSGSSHHHHHQVPSMLRQVRDSTMLDL 150

>CD2AP_MOUSE (Q9JLQ0) CD2-associated protein (Mesenchym-to-epithelium transition|
           protein with SH3 domains 1) (METS-1)
          Length = 637

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 76  SPPAQPRFDPLRPTSPTS*PFIAPSCYLRQRRQVRPPAATHPMRP 210
           S PA P+  P +PT+PT           +    +R P A +P RP
Sbjct: 380 SKPAAPQVPPKKPTAPT-----------KASNLLRSPGAVYPKRP 413

>SNX41_CRYNE (Q5KKB9) Sorting nexin-41|
          Length = 638

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 70  MFSPPAQPRFDPLRPTSPTS*PFIAPSCYLRQRRQVRPPAATHPMR 207
           + +P   P F P  PTSP+  P  A + Y+     +  P+ +HP+R
Sbjct: 218 LHAPSHNPTFQPTTPTSPSEAP--ATTSYI-AHHLLPTPSPSHPLR 260

>PRIL_METTH (O26686) Probable DNA primase large subunit (EC 2.7.7.-)|
          Length = 434

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 80  RRRSPDSTPCAPPHRRANHSSHLPVIYDNAGKCDP 184
           R R+P       P  R      LPVIYD A +C+P
Sbjct: 317 RDRTPMKVSDLDPDLRITLGEILPVIYDAADRCEP 351

>PDE2_CAEEL (P30645) Probable 3',5'-cyclic phosphodiesterase pde-2 (EC|
           3.1.4.17)
          Length = 859

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 216 PVRRCVARELGGRSHHHHHPVSCLTRLPGGSTAF 317
           P   C   + G   HHHHH  +  +   GG T F
Sbjct: 17  PQTNCQNSQRGDGLHHHHHEAASGSTCCGGMTVF 50

>AMEL_ORNAN (O97646) Amelogenin (Fragment)|
          Length = 121

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/56 (30%), Positives = 21/56 (37%)
 Frame = +1

Query: 52  TNHSAAMFSPPAQPRFDPLRPTSPTS*PFIAPSCYLRQRRQVRPPAATHPMRPLVQ 219
           T H  +    PAQ  F P  P  P   P             ++P A  HPM P+ Q
Sbjct: 52  TQHHQSNLPQPAQQPFQPQVPQQPPHQP-------------IQPQAPAHPMPPMPQ 94

>MEP50_MOUSE (Q99J09) Methylosome protein 50 (MEP50 protein) (WD-repeat protein|
           77)
          Length = 342

 Score = 24.6 bits (52), Expect(2) = 8.9
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 431 PSAEPHEGFCS 463
           PSA P+EGFCS
Sbjct: 64  PSAAPNEGFCS 74



 Score = 22.3 bits (46), Expect(2) = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 280 PVSPGCLEDQLLSV-YRSKNSSLL 348
           P +P C+E QL +  YRS  S LL
Sbjct: 21  PNAPACMERQLEAARYRSDGSLLL 44


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,987,877
Number of Sequences: 219361
Number of extensions: 1233232
Number of successful extensions: 3849
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3800
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)