>XRN2_HUMAN (Q9H0D6) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (DHM1-like protein)|
           (DHP protein)
          Length = 950

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 39/80 (48%), Positives = 48/80 (60%)
 Frame = +1

Query: 145 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHPCFHP 324
           F+RWL+ KYP +                   D SKPNPN +EFDNLYLDMNGIIHPC HP
Sbjct: 6   FFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHP 65

Query: 325 EDRASPTTFAEVFQCMFDYI 384
           ED+ +P    E+   +F+YI
Sbjct: 66  EDKPAPKNEDEMMVAIFEYI 85

>XRN2_MOUSE (Q9DBR1) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Protein Dhm1)|
          Length = 951

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 39/80 (48%), Positives = 48/80 (60%)
 Frame = +1

Query: 145 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHPCFHP 324
           F+RWL+ KYP +                   D SKPNPN +EFDNLYLDMNGIIHPC HP
Sbjct: 6   FFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHP 65

Query: 325 EDRASPTTFAEVFQCMFDYI 384
           ED+ +P    E+   +F+YI
Sbjct: 66  EDKPAPKNEDEMMVAIFEYI 85

>XRN2_SCHPO (P40848) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Protein dhp1)|
          Length = 991

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +1

Query: 238 DTSKPNPNGLEFDNLYLDMNGIIHPCFHPEDRASPTTFAEVFQCMFDY 381
           D S PNPNG+E DNLYLDMNGI+HPC HPEDR +P T  E+   +F+Y
Sbjct: 38  DLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEY 85

>XRN2_YEAST (Q02792) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Ribonucleic acid|
           trafficking protein 1) (p116)
          Length = 1006

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 35/79 (44%), Positives = 44/79 (55%)
 Frame = +1

Query: 145 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHPCFHP 324
           F+RWL+ KYP +                   D S  NPNG E DNLYLDMNGI+HPC HP
Sbjct: 6   FFRWLSRKYPKIISPVLEEQPQIVDGVILPLDYSASNPNG-ELDNLYLDMNGIVHPCSHP 64

Query: 325 EDRASPTTFAEVFQCMFDY 381
           E++  P T  E+   +F+Y
Sbjct: 65  ENKPPPETEDEMLLAVFEY 83

>XRN1_HUMAN (Q8IZH2) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand-exchange|
           protein 1 homolog)
          Length = 1706

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 26/62 (41%), Positives = 29/62 (46%)
 Frame = +1

Query: 145 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHPCFHP 324
           FYRW++E+YP L                             EFDNLYLDMNGIIH C HP
Sbjct: 6   FYRWISERYPCLSEVVKEHQIP-------------------EFDNLYLDMNGIIHQCSHP 46

Query: 325 ED 330
            D
Sbjct: 47  ND 48

>XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1)|
           (Strand-exchange protein 1 homolog) (Protein Dhm2)
          Length = 1719

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 26/62 (41%), Positives = 29/62 (46%)
 Frame = +1

Query: 145 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHPCFHP 324
           FYRW++E+YP L                             EFDNLYLDMNGIIH C HP
Sbjct: 6   FYRWISERYPCLSEVVKEHQIP-------------------EFDNLYLDMNGIIHQCSHP 46

Query: 325 ED 330
            D
Sbjct: 47  ND 48

>XRN1_SCHPO (P40383) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Exonuclease 2)|
           (Exonuclease II) (Exo II) (p140)
          Length = 1328

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +1

Query: 145 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHPCFHP 324
           F+RW++E+YP+                         N    EFDNLYLDMNGI+H C H 
Sbjct: 6   FFRWMSERYPLCSQLIE-------------------NDRIPEFDNLYLDMNGILHNCTHK 46

Query: 325 EDRAS--PTTFAEVFQCMFDYI 384
            D  S  P    E++  +F+YI
Sbjct: 47  NDDHSSPPLPEEEMYIAIFNYI 68

>XRN1_YEAST (P22147) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand exchange|
           protein 1) (KAR(-)-enhancing mutation protein) (5'-3'
           exoribonuclease) (DNA strand transfer protein beta)
           (STP-beta) (p175)
          Length = 1528

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +1

Query: 145 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHPCFH- 321
           F+R+++E++PM+                    T  P     EFDNLYLDMN I+H C H 
Sbjct: 6   FFRYISERWPMILQLIEG--------------TQIP-----EFDNLYLDMNSILHNCTHG 46

Query: 322 -PEDRASPTTFAEVFQCMFDYI 384
             +D     T  EVF  +  YI
Sbjct: 47  NDDDVTKRLTEEEVFAKICTYI 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,010,230
Number of Sequences: 219361
Number of extensions: 384361
Number of successful extensions: 1163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)