>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                       
Query: 346     agagacctgggaactccaacaaggatttaagcaatgtatg 385
               |||||||| ||||| |||| ||||||||||||||||||||
Sbjct: 8740064 agagaccttggaaccccaagaaggatttaagcaatgtatg 8740025

>dbj|AP002817.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0699D11
          Length = 140825

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 346   agagacctgggaactccaacaaggatttaagcaatgtatg 385
             |||||||| ||||| |||| ||||||||||||||||||||
Sbjct: 57521 agagaccttggaaccccaagaaggatttaagcaatgtatg 57482

>dbj|AK070313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049J12, full
           insert sequence
          Length = 3512

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 346 agagacctgggaactccaacaaggatttaagcaatgtatg 385
           |||||||| ||||| |||| ||||||||||||||||||||
Sbjct: 531 agagaccttggaaccccaagaaggatttaagcaatgtatg 570

>dbj|AB154403.1| Uncultured bacterium gene for 16S ribosomal RNA, partial sequence,
           clone:MS-3
          Length = 465

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 403 ctcccctagctctcgcacactc 424
           ||||||||||||||||||||||
Sbjct: 403 ctcccctagctctcgcacactc 382

>ref|NM_015627.1| Homo sapiens low density lipoprotein receptor adaptor protein 1
            (LDLRAP1), mRNA
          Length = 2862

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 65   gcagacactcaaacgcacacacaga 89
            ||||||||||||||| |||||||||
Sbjct: 1842 gcagacactcaaacggacacacaga 1818

>gb|BC029770.1| Homo sapiens LDL receptor adaptor protein, mRNA (cDNA clone MGC:34705
            IMAGE:5197824), complete cds
          Length = 2899

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 65   gcagacactcaaacgcacacacaga 89
            ||||||||||||||| |||||||||
Sbjct: 1842 gcagacactcaaacggacacacaga 1818

>gb|AY389348.1| Homo sapiens LDL receptor adaptor protein (ARH) gene, complete cds
          Length = 43420

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 65    gcagacactcaaacgcacacacaga 89
             ||||||||||||||| |||||||||
Sbjct: 34310 gcagacactcaaacggacacacaga 34286

>emb|AL606491.19| Human DNA sequence from clone RP11-70P17 on chromosome 1 Contains the
            3' end of the gene for LDL receptor adaptor protein (ARH)
            and a novel gene, complete sequence
          Length = 49875

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 65   gcagacactcaaacgcacacacaga 89
            ||||||||||||||| |||||||||
Sbjct: 5587 gcagacactcaaacggacacacaga 5563

>emb|AL357520.12| Human DNA sequence from clone RP11-288D15 on chromosome 10 Contains a
             pseudogene similar to part of glycogen synthase kinase 3
             and a ubiquitin-conjugating enzyme pseudogene, complete
             sequence
          Length = 178942

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 349   gacctgggaactccaacaagg 369
             |||||||||||||||||||||
Sbjct: 66608 gacctgggaactccaacaagg 66628

>emb|AL117654.1|HSM801191 Homo sapiens mRNA; cDNA DKFZp586D0624 (from clone DKFZp586D0624)
          Length = 2869

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 65   gcagacactcaaacgcacacacaga 89
            ||||||||||||||| |||||||||
Sbjct: 1839 gcagacactcaaacggacacacaga 1815

>gb|AC153538.10| Mus musculus 10 BAC RP23-136I11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210649

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 66     cagacactcaaacgcacacacagag 90
              ||||||| |||||||||||||||||
Sbjct: 209701 cagacacacaaacgcacacacagag 209725

>dbj|AK124554.1| Homo sapiens cDNA FLJ42563 fis, clone BRACE3007258
          Length = 3336

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 65   gcagacactcaaacgcacacacaga 89
            ||||||||||||||| |||||||||
Sbjct: 2333 gcagacactcaaacggacacacaga 2309

>dbj|AK091219.1| Homo sapiens cDNA FLJ33900 fis, clone CTONG2008262
          Length = 2939

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 65   gcagacactcaaacgcacacacaga 89
            ||||||||||||||| |||||||||
Sbjct: 1936 gcagacactcaaacggacacacaga 1912

>gb|AC010665.6| Drosophila melanogaster 3L BAC RP98-23H9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 156526

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 63    aggcagacactcaaacgcacacaca 87
             ||||||||||||| |||||||||||
Sbjct: 60529 aggcagacactcacacgcacacaca 60553

>dbj|AK024397.1| Homo sapiens cDNA FLJ14335 fis, clone PLACE4000411, highly similar to
            Homo sapiens mRNA; cDNA DKFZp586D0624 (from clone
            DKFZp586D0624)
          Length = 4674

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 65   gcagacactcaaacgcacacacaga 89
            ||||||||||||||| |||||||||
Sbjct: 3671 gcagacactcaaacggacacacaga 3647

>gb|AC156504.5| Mus musculus 10 BAC RP24-315I19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 208535

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 66     cagacactcaaacgcacacacagag 90
              ||||||| |||||||||||||||||
Sbjct: 189437 cagacacacaaacgcacacacagag 189413

>gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16 of 83 of the
            complete sequence
          Length = 302417

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 63   aggcagacactcaaacgcacacaca 87
            ||||||||||||| |||||||||||
Sbjct: 7383 aggcagacactcacacgcacacaca 7407

>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     gacactcaaacgcacacaca 87
              ||||||||||||||||||||
Sbjct: 718518 gacactcaaacgcacacaca 718499

>emb|CR706888.2|CNS0G8DW Tetraodon nigroviridis full-length cDNA
          Length = 1369

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 255 gcaatcactggtttgtggtt 274
           ||||||||||||||||||||
Sbjct: 627 gcaatcactggtttgtggtt 608

>gb|AC159272.2| Mus musculus BAC clone RP23-423J20 from chromosome 13, complete
            sequence
          Length = 186588

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  aagataccagctgcaggaac 161
            ||||||||||||||||||||
Sbjct: 4035 aagataccagctgcaggaac 4016

>gb|AC112342.14| Rattus norvegicus 14 BAC CH230-253H12 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 150292

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 63    aggcagacactcaaacgcacacacagag 90
             |||||||||| ||||| |||||||||||
Sbjct: 67473 aggcagacacacaaacacacacacagag 67500

>gb|AC109635.6| Homo sapiens chromosome 11, clone RP11-347H15, complete sequence
          Length = 167920

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tcccttgaccaaaagatacc 149
             ||||||||||||||||||||
Sbjct: 72040 tcccttgaccaaaagatacc 72021

>gb|AC122371.4| Mus musculus BAC clone RP23-459C10 from chromosome 13, complete
             sequence
          Length = 177577

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   aagataccagctgcaggaac 161
             ||||||||||||||||||||
Sbjct: 46209 aagataccagctgcaggaac 46228

>gb|AC025787.9| Homo sapiens chromosome 11, clone RP11-227P3, complete sequence
          Length = 168793

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    tcccttgaccaaaagatacc 149
              ||||||||||||||||||||
Sbjct: 136437 tcccttgaccaaaagatacc 136418

>gb|AC091401.2| Sus scrofa clone RP44-198J22, complete sequence
          Length = 177559

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   gggaactccaacaaggattt 373
             ||||||||||||||||||||
Sbjct: 33552 gggaactccaacaaggattt 33571


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,927,591
Number of Sequences: 3902068
Number of extensions: 2927591
Number of successful extensions: 49483
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49423
Number of HSP's gapped (non-prelim): 60
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)