Clone Information

BLAST Search Result

Clone Name	bastl05c08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_474309.1\| Oryza sativa (japonica cultivar-group), predic...	121	2e-24
2	emb\|AL606652.4\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	121	2e-24
3	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	121	2e-24
4	dbj\|AK099725.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	121	2e-24
5	emb\|AL732355.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	121	2e-24
6	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.027
7	dbj\|AP004651.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.027
8	dbj\|AK065783.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.027
9	gb\|BT018091.1\| Zea mays clone EL01N0552D12.c mRNA sequence	42	1.6
10	gb\|AC140267.2\| Mus musculus BAC clone RP24-303O5 from chromosome...	42	1.6
11	gb\|AC129328.4\| Mus musculus BAC clone RP23-15O6 from chromosome ...	42	1.6
12	gb\|AC141899.4\| Mus musculus BAC clone RP23-116G15 from chromosom...	42	1.6
13	ref\|XR_001947.1\| PREDICTED: Mus musculus similar to 40S ribosoma...	42	1.6
14	ref\|XM_969706.1\| PREDICTED: Tribolium castaneum similar to Barde...	42	1.6
15	dbj\|AK134982.1\| Mus musculus adult male olfactory brain cDNA, RI...	42	1.6
16	gb\|AC117220.4\| Mus musculus BAC clone RP23-344H17 from chromosom...	42	1.6
17	gb\|AC155313.2\| Mus musculus BAC clone RP23-349D10 from chromosom...	42	1.6
18	tpe\|BN000130.1\|MMU000130 TPA: TPA_inf: Mus musculus mRNA for put...	42	1.6
19	ref\|NM_203660.1\| Mus musculus C6.1A-like (C6.1AL), mRNA	42	1.6
20	gb\|DQ145196.1\| Drosophila miranda neo-X CG13216 gene, partial se...	40	6.5
21	gb\|AC007078.4\| Homo sapiens BAC clone RP11-340A14 from 7, comple...	40	6.5
22	ref\|XM_857850.1\| PREDICTED: Canis familiaris similar to Jumonji ...	40	6.5
23	ref\|XM_539647.2\| PREDICTED: Canis familiaris similar to Jumonji ...	40	6.5
24	ref\|XM_857801.1\| PREDICTED: Canis familiaris similar to Jumonji ...	40	6.5
25	ref\|XM_845912.1\| PREDICTED: Canis familiaris similar to Jumonji ...	40	6.5
26	gb\|AC114737.3\| Homo sapiens BAC clone CTD-2192D1 from 7, complet...	40	6.5
27	emb\|AL157838.24\| Human DNA sequence from clone RP4-724E16 on chr...	40	6.5
28	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	40	6.5
29	emb\|AL939105.1\|SCO939105 Streptomyces coelicolor A3(2) complete ...	40	6.5
30	gb\|AC078925.18\| Homo sapiens 12q BAC RP11-76C10 (Roswell Park Ca...	40	6.5
31	emb\|CR860661.1\| Pongo pygmaeus mRNA; cDNA DKFZp459C1214 (from cl...	40	6.5
32	gb\|AC148314.3\| Pan troglodytes BAC clone CH251-527C13 from chrom...	40	6.5
33	gb\|CP000267.1\| Rhodoferax ferrireducens DSM 15236, complete genome	40	6.5
34	dbj\|AP002086.1\| Agrobacterium rhizogenes plasmid pRi1724 DNA, co...	40	6.5
35	gb\|AF312915.1\|AF312915 Homo sapiens chromosome 20 clones 97 and ...	40	6.5
36	gb\|AC106886.3\| Homo sapiens chromosome 16 clone RP11-2C24, compl...	40	6.5
37	gb\|AC090764.35\| Homo sapiens chromosome 15, clone RP11-289D12, c...	40	6.5
38	gb\|AC135069.17\| Homo sapiens chromosome 15, clone RP11-1081C20, ...	40	6.5
39	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	6.5
40	gb\|AC138417.3\| Homo sapiens chromosome 16 clone LA16c-367E6, com...	40	6.5
41	gb\|AC093540.3\| Pan troglodytes clone RP43-84M6, complete sequence	40	6.5
42	emb\|CT025614.7\| Mouse DNA sequence from clone RP23-418B18 on chr...	40	6.5
43	dbj\|AB039932.1\| Agrobacterium rhizogenes plasmid pRi1724 DNA, VA...	40	6.5

>ref|XM_474309.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2880

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Plus

                                                                       
Query: 296 ccacaagaatccaaacccttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaa 355
           ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 10  ccacaagaatccaattccttgtgcttgaagcgcaagcttgttgatgactgcctgtcaaaa 69

                            
Query: 356 gagtgcaagtctcgtcg 372
           |||||||||||||||||
Sbjct: 70  gagtgcaagtctcgtcg 86



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 419 tgcaagtgctgttgcctgcgacctaatcttgccagtgattgcgtcaattacctgaaaagt 478
           ||||| |||||||||   |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 133 tgcaaatgctgttgcactcgacctaaccttgccagtgattgtgtcaattacctaaaaagt 192

               
Query: 479 ggag 482
           ||||
Sbjct: 193 ggag 196

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>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17,
             complete sequence
          Length = 159894

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                         
Query: 296   ccacaagaatccaaacccttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaa 355
             ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 77086 ccacaagaatccaattccttgtgcttgaagcgcaagcttgttgatgactgcctgtcaaaa 77027

                              
Query: 356   gagtgcaagtctcgtcg 372
             |||||||||||||||||
Sbjct: 77026 gagtgcaagtctcgtcg 77010



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                         
Query: 419   tgcaagtgctgttgcctgcgacctaatcttgccagtgattgcgtcaattacctgaaaagt 478
             ||||| |||||||||   |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 76963 tgcaaatgctgttgcactcgacctaaccttgccagtgattgtgtcaattacctaaaaagt 76904

                 
Query: 479   ggag 482
             ||||
Sbjct: 76903 ggag 76900

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 296      ccacaagaatccaaacccttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaa 355
                ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 34352683 ccacaagaatccaattccttgtgcttgaagcgcaagcttgttgatgactgcctgtcaaaa 34352624

                                 
Query: 356      gagtgcaagtctcgtcg 372
                |||||||||||||||||
Sbjct: 34352623 gagtgcaagtctcgtcg 34352607



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 419      tgcaagtgctgttgcctgcgacctaatcttgccagtgattgcgtcaattacctgaaaagt 478
                ||||| |||||||||   |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 34352560 tgcaaatgctgttgcactcgacctaaccttgccagtgattgtgtcaattacctaaaaagt 34352501

                    
Query: 479      ggag 482
                ||||
Sbjct: 34352500 ggag 34352497

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>dbj|AK099725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B18, full
           insert sequence
          Length = 3560

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Plus

                                                                       
Query: 296 ccacaagaatccaaacccttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaa 355
           ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 296 ccacaagaatccaattccttgtgcttgaagcgcaagcttgttgatgactgcctgtcaaaa 355

                            
Query: 356 gagtgcaagtctcgtcg 372
           |||||||||||||||||
Sbjct: 356 gagtgcaagtctcgtcg 372



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 419 tgcaagtgctgttgcctgcgacctaatcttgccagtgattgcgtcaattacctgaaaagt 478
           ||||| |||||||||   |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 419 tgcaaatgctgttgcactcgacctaaccttgccagtgattgtgtcaattacctaaaaagt 478

               
Query: 479 ggag 482
           ||||
Sbjct: 479 ggag 482

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>emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0322F07, complete
             sequence
          Length = 100419

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                         
Query: 296   ccacaagaatccaaacccttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaa 355
             ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 37221 ccacaagaatccaattccttgtgcttgaagcgcaagcttgttgatgactgcctgtcaaaa 37162

                              
Query: 356   gagtgcaagtctcgtcg 372
             |||||||||||||||||
Sbjct: 37161 gagtgcaagtctcgtcg 37145



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                         
Query: 419   tgcaagtgctgttgcctgcgacctaatcttgccagtgattgcgtcaattacctgaaaagt 478
             ||||| |||||||||   |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 37098 tgcaaatgctgttgcactcgacctaaccttgccagtgattgtgtcaattacctaaaaagt 37039

                 
Query: 479   ggag 482
             ||||
Sbjct: 37038 ggag 37035

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 314     ttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaaga 357
               |||||| |||||||||||||||  ||||| |||||||| |||||
Sbjct: 7710043 ttgtgcctgaagcgcaagcttgttgatgattgcctgtcgaaaga 7710086

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>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0091G06
          Length = 161851

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 314   ttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaaga 357
             |||||| |||||||||||||||  ||||| |||||||| |||||
Sbjct: 22541 ttgtgcctgaagcgcaagcttgttgatgattgcctgtcgaaaga 22584

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>dbj|AK065783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038L18, full
           insert sequence
          Length = 2830

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 314 ttgtgcttgaagcgcaagcttgccgatgactgcctgtcaaaaga 357
           |||||| |||||||||||||||  ||||| |||||||| |||||
Sbjct: 171 ttgtgcctgaagcgcaagcttgttgatgattgcctgtcgaaaga 214

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>gb|BT018091.1| Zea mays clone EL01N0552D12.c mRNA sequence
          Length = 1282

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 144 ccaccgccccggccccgtcgtccgccttctcct 176
           ||||||||||||| || |||||||||| |||||
Sbjct: 60  ccaccgccccggcaccctcgtccgcctcctcct 92

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>gb|AC140267.2| Mus musculus BAC clone RP24-303O5 from chromosome 15, complete sequence
          Length = 169842

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 139   ccccaccaccgccccggccccgtcg 163
             ||||||| |||||||||||||||||
Sbjct: 31940 ccccacccccgccccggccccgtcg 31916

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>gb|AC129328.4| Mus musculus BAC clone RP23-15O6 from chromosome 17, complete sequence
          Length = 234041

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 13    gcacgaggcagaggcagtaggcagg 37
             ||||||||||||||||| |||||||
Sbjct: 30784 gcacgaggcagaggcaggaggcagg 30760

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>gb|AC141899.4| Mus musculus BAC clone RP23-116G15 from chromosome 10, complete sequence
          Length = 210306

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 394    ctctgatccatcatctggtaaatgg 418
              |||||||||||||||||||| ||||
Sbjct: 141776 ctctgatccatcatctggtacatgg 141800

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>ref|XR_001947.1| PREDICTED: Mus musculus similar to 40S ribosomal protein S2
           (LOC666948), mRNA
          Length = 942

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 139 ccccaccaccgccccggccccgtcg 163
           ||||||| |||||||||||||||||
Sbjct: 75  ccccacccccgccccggccccgtcg 51

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>ref|XM_969706.1| PREDICTED: Tribolium castaneum similar to Bardet-Biedl syndrome 1
           (LOC663670), mRNA
          Length = 1767

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 8   caaaggcacgaggcagaggca 28
           |||||||||||||||||||||
Sbjct: 987 caaaggcacgaggcagaggca 967

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>dbj|AK134982.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
           enriched library, clone:6430536H22 product:Putative
           C6.1A-like protease homolog [Mus musculus], full insert
           sequence
          Length = 927

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 394 ctctgatccatcatctggtaaatgg 418
           |||||||||||||||||||| ||||
Sbjct: 41  ctctgatccatcatctggtacatgg 17

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>gb|AC117220.4| Mus musculus BAC clone RP23-344H17 from chromosome 17, complete sequence
          Length = 187691

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 13     gcacgaggcagaggcagtaggcagg 37
              ||||||||||||||||| |||||||
Sbjct: 124830 gcacgaggcagaggcaggaggcagg 124806



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 13    gcacgaggcagaggcagtaggcagg 37
             ||||||||||||||||| |||||||
Sbjct: 67619 gcacgaggcagaggcaggaggcagg 67595

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>gb|AC155313.2| Mus musculus BAC clone RP23-349D10 from chromosome 15, complete sequence
          Length = 213367

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 139    ccccaccaccgccccggccccgtcg 163
              ||||||| |||||||||||||||||
Sbjct: 171052 ccccacccccgccccggccccgtcg 171028

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>tpe|BN000130.1|MMU000130 TPA: TPA_inf: Mus musculus mRNA for putative C6.1A-like protease
           (C6.1AL gene)
          Length = 876

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 394 ctctgatccatcatctggtaaatgg 418
           |||||||||||||||||||| ||||
Sbjct: 443 ctctgatccatcatctggtacatgg 419

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>ref|NM_203660.1| Mus musculus C6.1A-like (C6.1AL), mRNA
          Length = 876

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 394 ctctgatccatcatctggtaaatgg 418
           |||||||||||||||||||| ||||
Sbjct: 443 ctctgatccatcatctggtacatgg 419

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>gb|DQ145196.1| Drosophila miranda neo-X CG13216 gene, partial sequence
          Length = 1170

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 acgccggcggcagccacctc 121
           ||||||||||||||||||||
Sbjct: 411 acgccggcggcagccacctc 430

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>gb|AC007078.4| Homo sapiens BAC clone RP11-340A14 from 7, complete sequence
          Length = 14475

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 113  agccacctctcctgctcccggcct 136
            ||||||||||||||||||| ||||
Sbjct: 3209 agccacctctcctgctccctgcct 3232

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>ref|XM_857850.1| PREDICTED: Canis familiaris similar to Jumonji domain containing
            protein 2A, transcript variant 4 (LOC482530), mRNA
          Length = 3299

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   cctctccatcctcaagccct 69
            ||||||||||||||||||||
Sbjct: 1153 cctctccatcctcaagccct 1134

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>ref|XM_539647.2| PREDICTED: Canis familiaris similar to Jumonji domain containing
            protein 2A, transcript variant 1 (LOC482530), mRNA
          Length = 3398

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   cctctccatcctcaagccct 69
            ||||||||||||||||||||
Sbjct: 1153 cctctccatcctcaagccct 1134

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>ref|XM_857801.1| PREDICTED: Canis familiaris similar to Jumonji domain containing
            protein 2A, transcript variant 3 (LOC482530), mRNA
          Length = 3350

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   cctctccatcctcaagccct 69
            ||||||||||||||||||||
Sbjct: 1153 cctctccatcctcaagccct 1134

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>ref|XM_845912.1| PREDICTED: Canis familiaris similar to Jumonji domain containing
            protein 2A, transcript variant 2 (LOC482530), mRNA
          Length = 3311

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   cctctccatcctcaagccct 69
            ||||||||||||||||||||
Sbjct: 1153 cctctccatcctcaagccct 1134

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>gb|AC114737.3| Homo sapiens BAC clone CTD-2192D1 from 7, complete sequence
          Length = 99227

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 113   agccacctctcctgctcccggcct 136
             ||||||||||||||||||| ||||
Sbjct: 79967 agccacctctcctgctccctgcct 79944

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>emb|AL157838.24| Human DNA sequence from clone RP4-724E16 on chromosome 20q13.12-13.32
             Contains the ZNF217 gene for zinc finger protein 217, the
             gene for a novel protein (FLJ14031) and two CpG islands,
             complete sequence
          Length = 128871

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 129   cccggcctcgccccaccaccgccccggccccg 160
             ||||||| |||||||| |||||||||||||||
Sbjct: 82803 cccggccacgccccac-accgccccggccccg 82833

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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 315     tgtgcttgaagcgcaagctt 334
               ||||||||||||||||||||
Sbjct: 1957083 tgtgcttgaagcgcaagctt 1957064

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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 153   cggccccgtcgtccgccttctcctgatc 180
             |||| ||||||||||||| |||||||||
Sbjct: 12370 cggcgccgtcgtccgcctgctcctgatc 12397

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>gb|AC078925.18| Homo sapiens 12q BAC RP11-76C10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 153284

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   gccacctctcctgctcccggcctc 137
             |||||||||||||||||| |||||
Sbjct: 44119 gccacctctcctgctccccgcctc 44142

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>emb|CR860661.1| Pongo pygmaeus mRNA; cDNA DKFZp459C1214 (from clone DKFZp459C1214)
          Length = 2562

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  cccaccaccgccccggcccc 159
            ||||||||||||||||||||
Sbjct: 1458 cccaccaccgccccggcccc 1439

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>gb|AC148314.3| Pan troglodytes BAC clone CH251-527C13 from chromosome 7, complete
              sequence
          Length = 172090

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 113    agccacctctcctgctcccggcct 136
              ||||||||||||||||||| ||||
Sbjct: 145315 agccacctctcctgctccctgcct 145292

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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 87      tggcgcagcgcctacacgccggcg 110
               |||||||||||| |||||||||||
Sbjct: 3161409 tggcgcagcgccgacacgccggcg 3161432

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>dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence
          Length = 217594

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aatcggcggtggcgcagcgc 97
             ||||||||||||||||||||
Sbjct: 50875 aatcggcggtggcgcagcgc 50894

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>gb|AF312915.1|AF312915 Homo sapiens chromosome 20 clones 97 and 127, complete sequence
          Length = 121143

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 129    cccggcctcgccccaccaccgccccggccccg 160
              ||||||| |||||||| |||||||||||||||
Sbjct: 116539 cccggccacgccccac-accgccccggccccg 116569

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>gb|AC106886.3| Homo sapiens chromosome 16 clone RP11-2C24, complete sequence
          Length = 207950

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 107    ggcggcagccacctctcctgctcc 130
              |||| |||||||||||||||||||
Sbjct: 199615 ggcgtcagccacctctcctgctcc 199592

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>gb|AC090764.35| Homo sapiens chromosome 15, clone RP11-289D12, complete sequence
          Length = 137300

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    gcagaggcagtaggcaggct 39
             ||||||||||||||||||||
Sbjct: 67363 gcagaggcagtaggcaggct 67382

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>gb|AC135069.17| Homo sapiens chromosome 15, clone RP11-1081C20, complete sequence
          Length = 222726

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    gcagaggcagtaggcaggct 39
             ||||||||||||||||||||
Sbjct: 46519 gcagaggcagtaggcaggct 46538

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     accaccgccccggccccgtc 162
               ||||||||||||||||||||
Sbjct: 1485824 accaccgccccggccccgtc 1485805

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>gb|AC138417.3| Homo sapiens chromosome 16 clone LA16c-367E6, complete sequence
          Length = 21579

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   ggcggcagccacctctcctgctcc 130
             |||| |||||||||||||||||||
Sbjct: 16913 ggcgtcagccacctctcctgctcc 16936

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>gb|AC093540.3| Pan troglodytes clone RP43-84M6, complete sequence
          Length = 171092

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 113    agccacctctcctgctcccggcct 136
              ||||||||||||||||||| ||||
Sbjct: 151615 agccacctctcctgctccctgcct 151592

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>emb|CT025614.7| Mouse DNA sequence from clone RP23-418B18 on chromosome 13, complete
              sequence
          Length = 183907

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 215    acctgtaaattgtgtaccatatta 238
              |||||||||||||||||| |||||
Sbjct: 111203 acctgtaaattgtgtaccttatta 111226

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>dbj|AB039932.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, VAR region, complete cds
          Length = 73934

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aatcggcggtggcgcagcgc 97
             ||||||||||||||||||||
Sbjct: 11307 aatcggcggtggcgcagcgc 11326


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,821,279
Number of Sequences: 3902068
Number of extensions: 3821279
Number of successful extensions: 74692
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 74391
Number of HSP's gapped (non-prelim): 303
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result