ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl05c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Z30243.1|SCCLHSP S.cereale (Halo) chloroplast mRNA for heat-... 287 1e-74
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
3dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
4dbj|AK073817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
5ref|XM_483065.1| Oryza sativa (japonica cultivar-group), mRNA 76 9e-11
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
7dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
8dbj|AK122102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
9ref|XM_480968.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
10dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.020
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.020
13emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa... 48 0.020
14gb|BC068411.1| Danio rerio wu:fi72h12, mRNA (cDNA clone IMAGE:69... 44 0.32
15gb|AE005066.1| Halobacterium sp. NRC-1 section 97 of 170 of the ... 44 0.32
16gb|AC005586.2| Homo sapiens PAC clone RP4-584D14 from 7, complet... 42 1.3
17gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.3
18gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 42 1.3
19emb|CR616556.1| full-length cDNA clone CS0DI009YN08 of Placenta ... 42 1.3
20dbj|AK092804.1| Homo sapiens cDNA FLJ35485 fis, clone SMINT20084... 42 1.3
21emb|CR604348.1| full-length cDNA clone CS0DI071YN06 of Placenta ... 42 1.3
22gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome 42 1.3
23gb|AC146055.4| Pan troglodytes BAC clone RP43-80G9 from chromoso... 42 1.3
24gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.3
25ref|XM_464182.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
26ref|XM_463289.1| Oryza sativa (japonica cultivar-group), predic... 40 5.0
27gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosom... 40 5.0
28gb|AC146430.4| Pan troglodytes BAC clone RP43-21F8 from 7, compl... 40 5.0
29gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 5.0
30ref|XM_422230.1| PREDICTED: Gallus gallus similar to chromosome ... 40 5.0
31gb|AC132595.3| Mus musculus BAC clone RP24-229G7 from chromosome... 40 5.0
32gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.0
33gb|AC141057.2| Homo sapiens chromosome 16 clone RP11-1023K5, com... 40 5.0
34gb|AC165968.3| Mus musculus BAC clone RP23-181K4 from chromosome... 40 5.0
35gb|DQ334070.1| Drosophila miranda CG11409 gene, partial cds 40 5.0
36gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 5.0
37emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome... 40 5.0
38emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.0
39emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 5.0
40gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 gen... 40 5.0
41gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.0
42dbj|AB097473.1| Oryza sativa (japonica cultivar-group) transposo... 40 5.0
43gb|AC026782.6| Homo sapiens chromosome 5 clone CTD-2015A6, compl... 40 5.0
44gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7,... 40 5.0
45emb|CR353128.1| Gallus gallus finished cDNA, clone ChEST821i9 40 5.0
46dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
47dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
48dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
49gb|AC023824.6| Homo sapiens chromosome 16 clone RP11-244B22, com... 40 5.0
50gb|AC007353.5| Homo sapiens chromosome 16 clone RP11-488I20, com... 40 5.0
51dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
52dbj|AP006175.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
53dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
54dbj|AP004126.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
55dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
56dbj|AK109618.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
57dbj|AK069167.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
58gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.0
59gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0 
>emb|Z30243.1|SCCLHSP S.cereale (Halo) chloroplast mRNA for heat-shock protein
          Length = 2654

 Score =  287 bits (145), Expect = 1e-74
 Identities = 202/221 (91%)
 Strand = Plus / Plus

                                                                       
Query: 151 tctccctctcatggcgcccgcgctgagcaggaccctgggcccgtcgtcggtggcggcgct 210
           |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 92  tctctctctcatggcgcccgcgctgagcaggaccctgggcccgtcctcggtggcggcgct 151

                                                                       
Query: 211 gcggccgagcccgtcgcgggggctgccgcgggccgcgctcgcgccgcaggggaggaggcc 270
           ||||||||||||||||||||||||||||| |||||||||    || ||||| | |||| |
Sbjct: 152 gcggccgagcccgtcgcgggggctgccgctggccgcgctacttccacagggtaagaggtc 211

                                                                       
Query: 271 cgccggcgccagaggggtcaggtgggaggccgggagggagaggctcgtcggggcgaggtg 330
             || |||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||
Sbjct: 212 ttccagcgccagaggagtcaggtgggaggccgggaggggcaggctggtcggggcgaggtg 271

                                                    
Query: 331 cgcctccgccgtcgccgagaagaccgccggggaggaggagg 371
           |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 272 cgcctccgccgtcgccgagaagaccgccggcgaggaggagg 312



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 57/61 (93%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                       
Query: 83  acaccgcgccggaaccc-aaaccatccgagcaaccaaccaccagcgaaagcggtaggctc 141
           ||||||||||||||||| ||||||||||| |||||||||||||||||  |||||||||||
Sbjct: 7   acaccgcgccggaaccccaaaccatccgaacaaccaaccaccagcgagcgcggtaggctc 66

            
Query: 142 g 142
           |
Sbjct: 67  g 67
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                            
Query: 160      catggcgcccgcgctgagcaggaccctgggcccgtcgtcggtggcggcgctgcggccgag 219
                ||||||||| ||||||||||||| ||||||  ||||||| || ||||||||| |||||| 
Sbjct: 18100658 catggcgccggcgctgagcaggagcctgggggcgtcgtccgttgcggcgctgaggccgac 18100599

                            
Query: 220      cccgtcgcgggg 231
                ||||||||||||
Sbjct: 18100598 cccgtcgcgggg 18100587



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 336      ccgccgtcgccgagaagaccgccggggaggaggaggc 372
                |||||||| |||||||| |||||||||||||||||||
Sbjct: 18100455 ccgccgtcaccgagaagcccgccggggaggaggaggc 18100419



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 281      agaggggtcaggtgggaggccgggagg 307
                |||||||| ||||||||||||||||||
Sbjct: 18100522 agaggggtgaggtgggaggccgggagg 18100496



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 235      gccgcgggccgcgctcgcgc 254
                ||||||||||||||||||||
Sbjct: 20021717 gccgcgggccgcgctcgcgc 20021736
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>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0026C08
          Length = 155316

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                         
Query: 160   catggcgcccgcgctgagcaggaccctgggcccgtcgtcggtggcggcgctgcggccgag 219
             ||||||||| ||||||||||||| ||||||  ||||||| || ||||||||| |||||| 
Sbjct: 93780 catggcgccggcgctgagcaggagcctgggggcgtcgtccgttgcggcgctgaggccgac 93721

                         
Query: 220   cccgtcgcgggg 231
             ||||||||||||
Sbjct: 93720 cccgtcgcgggg 93709



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 336   ccgccgtcgccgagaagaccgccggggaggaggaggc 372
             |||||||| |||||||| |||||||||||||||||||
Sbjct: 93577 ccgccgtcaccgagaagcccgccggggaggaggaggc 93541



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 281   agaggggtcaggtgggaggccgggagg 307
             |||||||| ||||||||||||||||||
Sbjct: 93644 agaggggtgaggtgggaggccgggagg 93618
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>dbj|AK073817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068G01, full
           insert sequence
          Length = 2890

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                       
Query: 160 catggcgcccgcgctgagcaggaccctgggcccgtcgtcggtggcggcgctgcggccgag 219
           ||||||||| ||||||||||||| ||||||  ||||||| || ||||||||| |||||| 
Sbjct: 117 catggcgccggcgctgagcaggagcctgggggcgtcgtccgttgcggcgctgaggccgac 176

                       
Query: 220 cccgtcgcgggg 231
           ||||||||||||
Sbjct: 177 cccgtcgcgggg 188



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 336 ccgccgtcgccgagaagaccgccggggaggaggaggc 372
           |||||||| |||||||| |||||||||||||||||||
Sbjct: 320 ccgccgtcaccgagaagcccgccggggaggaggaggc 356



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 281 agaggggtcaggtgggaggccgggagg 307
           |||||||| ||||||||||||||||||
Sbjct: 253 agaggggtgaggtgggaggccgggagg 279
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>ref|XM_483065.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2702

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                     
Query: 160 catggcgcccgcgctgagcaggaccctgggcccgtcgtcggtggcggcgctgcggccg 217
           |||||||||  |||||||||||| ||||||  ||||||||||||||||||||||||||
Sbjct: 130 catggcgccttcgctgagcaggagcctgggggcgtcgtcggtggcggcgctgcggccg 187
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                          
Query: 160      catggcgcccgcgctgagcaggaccctgggcccgtcgtcggtggcggcgctgcggccg 217
                |||||||||  |||||||||||| ||||||  ||||||||||||||||||||||||||
Sbjct: 24122119 catggcgccttcgctgagcaggagcctgggggcgtcgtcggtggcggcgctgcggccg 24122062



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 170     gcgctgagcaggaccctgggcccgtcgtcggtggcggcgctgcggccgagccc 222
               ||||||| ||||||||| ||  ||||||||||||||||||| || ||||||||
Sbjct: 8972161 gcgctgaacaggaccctaggggcgtcgtcggtggcggcgctacgaccgagccc 8972109



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                       
Query: 317     gtcggggcgaggtgcgcctccgccgtcgccgagaagaccgccggggaggaggaggc 372
               |||||||  ||||||| | ||||| || |||||||| || ||||||||||||||||
Sbjct: 8971990 gtcggggtcaggtgcgacgccgccatcaccgagaagcccaccggggaggaggaggc 8971935



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 281     agaggggtcaggtgggaggccgggagg 307
               |||||||| ||||||||||||||||||
Sbjct: 8972038 agaggggtgaggtgggaggccgggagg 8972012



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 291     ggtgggaggccgggagggag 310
               ||||||||||||||||||||
Sbjct: 7617533 ggtgggaggccgggagggag 7617514
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>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0028A08
          Length = 150818

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                       
Query: 160   catggcgcccgcgctgagcaggaccctgggcccgtcgtcggtggcggcgctgcggccg 217
             |||||||||  |||||||||||| ||||||  ||||||||||||||||||||||||||
Sbjct: 75605 catggcgccttcgctgagcaggagcctgggggcgtcgtcggtggcggcgctgcggccg 75548
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>dbj|AK122102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125K17, full
           insert sequence
          Length = 2702

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                     
Query: 160 catggcgcccgcgctgagcaggaccctgggcccgtcgtcggtggcggcgctgcggccg 217
           |||||||||  |||||||||||| ||||||  ||||||||||||||||||||||||||
Sbjct: 129 catggcgccttcgctgagcaggagcctgggggcgtcgtcggtggcggcgctgcggccg 186
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>ref|XM_480968.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 309

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 170 gcgctgagcaggaccctgggcccgtcgtcggtggcggcgctgcggccgagccc 222
           ||||||| ||||||||| ||  ||||||||||||||||||| || ||||||||
Sbjct: 197 gcgctgaacaggaccctaggggcgtcgtcggtggcggcgctacgaccgagccc 145



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 281 agaggggtcaggtgggaggccgggagg 307
           |||||||| ||||||||||||||||||
Sbjct: 74  agaggggtgaggtgggaggccgggagg 48
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>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0049G15
          Length = 155303

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 170   gcgctgagcaggaccctgggcccgtcgtcggtggcggcgctgcggccgagccc 222
             ||||||| ||||||||| ||  ||||||||||||||||||| || ||||||||
Sbjct: 73823 gcgctgaacaggaccctaggggcgtcgtcggtggcggcgctacgaccgagccc 73771



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 317   gtcggggcgaggtgcgcctccgccgtcgccgagaagaccgccggggaggaggaggc 372
             |||||||  ||||||| | ||||| || |||||||| || ||||||||||||||||
Sbjct: 73652 gtcggggtcaggtgcgacgccgccatcaccgagaagcccaccggggaggaggaggc 73597



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 281   agaggggtcaggtgggaggccgggagg 307
             |||||||| ||||||||||||||||||
Sbjct: 73700 agaggggtgaggtgggaggccgggagg 73674
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 336      ccgccgtcgccgagaagaccgccggggaggaggagg 371
                ||||||||||||||||| | |||| |||||||||||
Sbjct: 26483062 ccgccgtcgccgagaaggcggccgaggaggaggagg 26483027
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 336      ccgccgtcgccgagaagaccgccggggaggaggagg 371
                ||||||||||||||||| | |||| |||||||||||
Sbjct: 26411231 ccgccgtcgccgagaaggcggccgaggaggaggagg 26411196
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>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146366

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 336   ccgccgtcgccgagaagaccgccggggaggaggagg 371
             ||||||||||||||||| | |||| |||||||||||
Sbjct: 59014 ccgccgtcgccgagaaggcggccgaggaggaggagg 59049
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>gb|BC068411.1| Danio rerio wu:fi72h12, mRNA (cDNA clone IMAGE:6965542), partial
           cds
          Length = 2598

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 141 cgccgccgtctctccctctcat 162
           ||||||||||||||||||||||
Sbjct: 590 cgccgccgtctctccctctcat 569
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>gb|AE005066.1| Halobacterium sp. NRC-1 section 97 of 170 of the complete genome
          Length = 11460

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 193 gtcgtcggtggcggcgctgcgg 214
           ||||||||||||||||||||||
Sbjct: 135 gtcgtcggtggcggcgctgcgg 114
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>gb|AC005586.2| Homo sapiens PAC clone RP4-584D14 from 7, complete sequence
          Length = 132150

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 220   cccgtcgcgggggctgccgcgggcc 244
             |||| ||||||||||||||||||||
Sbjct: 40729 cccggcgcgggggctgccgcgggcc 40705
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 237     cgcgggccgcgctcgcgccgc 257
               |||||||||||||||||||||
Sbjct: 1293633 cgcgggccgcgctcgcgccgc 1293653
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 192     cgtcgtcggtggcggcgctgc 212
               |||||||||||||||||||||
Sbjct: 1339767 cgtcgtcggtggcggcgctgc 1339747
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>emb|CR616556.1| full-length cDNA clone CS0DI009YN08 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1580

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 220 cccgtcgcgggggctgccgcgggcc 244
           |||| ||||||||||||||||||||
Sbjct: 411 cccggcgcgggggctgccgcgggcc 387
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>dbj|AK092804.1| Homo sapiens cDNA FLJ35485 fis, clone SMINT2008455, moderately
           similar to RETINOIC ACID RECEPTOR RESPONDER PROTEIN 2
           PRECURSOR
          Length = 1906

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 220 cccgtcgcgggggctgccgcgggcc 244
           |||| ||||||||||||||||||||
Sbjct: 466 cccggcgcgggggctgccgcgggcc 442
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>emb|CR604348.1| full-length cDNA clone CS0DI071YN06 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1618

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 220 cccgtcgcgggggctgccgcgggcc 244
           |||| ||||||||||||||||||||
Sbjct: 448 cccggcgcgggggctgccgcgggcc 424
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>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 337   cgccgtcgccgagaagaccgc 357
             |||||||||||||||||||||
Sbjct: 38961 cgccgtcgccgagaagaccgc 38941
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>gb|AC146055.4| Pan troglodytes BAC clone RP43-80G9 from chromosome 7, complete sequence
          Length = 184851

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 220    cccgtcgcgggggctgccgcgggcc 244
              |||| ||||||||||||||||||||
Sbjct: 171746 cccggcgcgggggctgccgcgggcc 171722
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 37/41 (90%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                        
Query: 207     cgctgcggccgagcccgtcgcgggggctgccgcgggccgcg 247
               ||||||||||||  ||||||||| ||||| |||||||||||
Sbjct: 1106525 cgctgcggccgacgccgtcgcggcggctg-cgcgggccgcg 1106564
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>ref|XM_464182.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1804

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 cgtcggtggcggcgctgcgg 214
           ||||||||||||||||||||
Sbjct: 422 cgtcggtggcggcgctgcgg 441
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>ref|XM_463289.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1917

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 cgaggtgcgcctccgccgtc 343
           ||||||||||||||||||||
Sbjct: 505 cgaggtgcgcctccgccgtc 486
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>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0096G08 map E1363S, complete sequence
          Length = 140681

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 336   ccgccgtcgccgagaagaccgccggggaggaggagg 371
             ||||||||||| ||||| | |||| |||||||||||
Sbjct: 35219 ccgccgtcgccaagaaggcggccgaggaggaggagg 35254
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>gb|AC146430.4| Pan troglodytes BAC clone RP43-21F8 from 7, complete sequence
          Length = 179251

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    cagaggggtcaggtgggagg 299
              ||||||||||||||||||||
Sbjct: 152963 cagaggggtcaggtgggagg 152944
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 198     cggtggcggcgctgcggccg 217
               ||||||||||||||||||||
Sbjct: 1119395 cggtggcggcgctgcggccg 1119414
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>ref|XM_422230.1| PREDICTED: Gallus gallus similar to chromosome 1 open reading frame
           9; membrane protein CH1 (LOC424386), partial mRNA
          Length = 732

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 241 ggccgcgctcgcgccgcaggggag 264
           ||||||||||||||||||| ||||
Sbjct: 16  ggccgcgctcgcgccgcagcggag 39
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>gb|AC132595.3| Mus musculus BAC clone RP24-229G7 from chromosome 7, complete sequence
          Length = 155547

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   gccggggaggaggaggccgc 375
             ||||||||||||||||||||
Sbjct: 63821 gccggggaggaggaggccgc 63840
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>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940128D9, complete sequence
          Length = 128585

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 198    cggtggcggcgctgcggccgagcc 221
              ||||||||||||||| ||||||||
Sbjct: 104151 cggtggcggcgctgccgccgagcc 104174
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>gb|AC141057.2| Homo sapiens chromosome 16 clone RP11-1023K5, complete sequence
          Length = 144576

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    ctagcctagagccttatcct 57
             ||||||||||||||||||||
Sbjct: 98331 ctagcctagagccttatcct 98350
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>gb|AC165968.3| Mus musculus BAC clone RP23-181K4 from chromosome 7, complete sequence
          Length = 190840

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   gccggggaggaggaggccgc 375
             ||||||||||||||||||||
Sbjct: 32971 gccggggaggaggaggccgc 32990
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>gb|DQ334070.1| Drosophila miranda CG11409 gene, partial cds
          Length = 1053

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 347 gagaagaccgccggggaggaggag 370
           |||||||||||||| |||||||||
Sbjct: 590 gagaagaccgccggcgaggaggag 567
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    ggcggcgctgcggccgagcc 221
              ||||||||||||||||||||
Sbjct: 485518 ggcggcgctgcggccgagcc 485499
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>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13
          Length = 349306

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   cggtggcggcgctgcggccg 217
             ||||||||||||||||||||
Sbjct: 85570 cggtggcggcgctgcggccg 85589
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>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    gcgctgcggccgagcccgtc 225
              ||||||||||||||||||||
Sbjct: 339830 gcgctgcggccgagcccgtc 339811
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>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14
          Length = 327650

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    cggtggcggcgctgcggccg 217
              ||||||||||||||||||||
Sbjct: 132808 cggtggcggcgctgcggccg 132827
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>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence,
            complete sequence
          Length = 137366

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 336  ccgccgtcgccgagaagaccgccggggaggaggagg 371
            ||||||||||| ||||| | |||| |||||||||||
Sbjct: 3331 ccgccgtcgccaagaaggcggccgaggaggaggagg 3296
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 340     cgtcgccgagaagaccgccg 359
               ||||||||||||||||||||
Sbjct: 3414992 cgtcgccgagaagaccgccg 3415011
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>dbj|AB097473.1| Oryza sativa (japonica cultivar-group) transposon AnacB12 DNA,
           complete sequence
          Length = 1571

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 336 ccgccgtcgccgagaagaccgccggggaggaggagg 371
           ||||||||||| ||||| | |||| |||||||||||
Sbjct: 526 ccgccgtcgccaagaaggcggccgaggaggaggagg 561
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>gb|AC026782.6| Homo sapiens chromosome 5 clone CTD-2015A6, complete sequence
          Length = 214025

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 288    tcaggtgggaggccgggagggaga 311
              ||||||||||||| ||||||||||
Sbjct: 197656 tcaggtgggaggctgggagggaga 197679
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>gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7, complete sequence
          Length = 133030

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   cagaggggtcaggtgggagg 299
             ||||||||||||||||||||
Sbjct: 97325 cagaggggtcaggtgggagg 97344
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>emb|CR353128.1| Gallus gallus finished cDNA, clone ChEST821i9
          Length = 934

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 241 ggccgcgctcgcgccgcaggggag 264
           ||||||||||||||||||| ||||
Sbjct: 19  ggccgcgctcgcgccgcagcggag 42
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 336      ccgccgtcgccgagaagaccgccggggaggaggagg 371
                ||||||||||| ||||| | |||| |||||||||||
Sbjct: 19774181 ccgccgtcgccaagaaggcggccgaggaggaggagg 19774216
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 195     cgtcggtggcggcgctgcgg 214
               ||||||||||||||||||||
Sbjct: 3255344 cgtcggtggcggcgctgcgg 3255363
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 324      cgaggtgcgcctccgccgtc 343
                ||||||||||||||||||||
Sbjct: 18366623 cgaggtgcgcctccgccgtc 18366604
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>gb|AC023824.6| Homo sapiens chromosome 16 clone RP11-244B22, complete sequence
          Length = 144577

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    ctagcctagagccttatcct 57
             ||||||||||||||||||||
Sbjct: 46246 ctagcctagagccttatcct 46227
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>gb|AC007353.5| Homo sapiens chromosome 16 clone RP11-488I20, complete sequence
          Length = 201061

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ctagcctagagccttatcct 57
              ||||||||||||||||||||
Sbjct: 176627 ctagcctagagccttatcct 176608
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>dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1108H10
          Length = 136357

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    cgaggtgcgcctccgccgtc 343
              ||||||||||||||||||||
Sbjct: 123957 cgaggtgcgcctccgccgtc 123938
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>dbj|AP006175.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0669G04
          Length = 74610

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   gccgcgggccgcgctcgcgc 254
             ||||||||||||||||||||
Sbjct: 28848 gccgcgggccgcgctcgcgc 28867
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>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1103G11
          Length = 182931

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    cgtcggtggcggcgctgcgg 214
              ||||||||||||||||||||
Sbjct: 127531 cgtcggtggcggcgctgcgg 127550
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>dbj|AP004126.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ9003_G05
          Length = 141860

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  cgtcggtggcggcgctgcgg 214
            ||||||||||||||||||||
Sbjct: 4204 cgtcggtggcggcgctgcgg 4223
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>dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0494D11
          Length = 149198

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   ggtgggaggccgggagggag 310
             ||||||||||||||||||||
Sbjct: 42728 ggtgggaggccgggagggag 42709
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>dbj|AK109618.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H06, full
           insert sequence
          Length = 1804

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 cgtcggtggcggcgctgcgg 214
           ||||||||||||||||||||
Sbjct: 422 cgtcggtggcggcgctgcgg 441
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>dbj|AK069167.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009D19, full
           insert sequence
          Length = 1199

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 336 ccgccgtcgccgagaagaccgccggggaggaggagg 371
           ||||||||||| ||||| | |||| |||||||||||
Sbjct: 616 ccgccgtcgccaagaaggcggccgaggaggaggagg 581
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 225     cgcgggggctgccgcgggccgcgc 248
               ||||||||||||||| ||||||||
Sbjct: 1657675 cgcgggggctgccgctggccgcgc 1657698



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 320    ggggcgaggtgcgcctccgccgtcgccg 347
              |||||| |||||||| ||||||||||||
Sbjct: 555522 ggggcggggtgcgccgccgccgtcgccg 555495
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 336      ccgccgtcgccgagaagaccgccggggaggaggagg 371
                ||||||||||| ||||| | |||| |||||||||||
Sbjct: 19785457 ccgccgtcgccaagaaggcggccgaggaggaggagg 19785492


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,696,474
Number of Sequences: 3902068
Number of extensions: 3696474
Number of successful extensions: 78644
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 77176
Number of HSP's gapped (non-prelim): 1468
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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