ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl05c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein ... 30 3.5
2UMP8_ARATH (Q9SMN1) Unknown mitochondrial protein At3g48680 29 7.8

>ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein 14 (BDG-29)|
          Length = 949

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 1    KRRGCARPPRDVSRPVSFRYSFAPPVIHISAT 96
            + + C +P  D +RP +FR  +APP   + +T
Sbjct: 917  RAQDCKQPSMDFNRPGTFRLKYAPPAESLDST 948



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>UMP8_ARATH (Q9SMN1) Unknown mitochondrial protein At3g48680|
          Length = 256

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -1

Query: 278 ALSSRAVNGGQIPKPSLRASPSPTFI*LDAMRRNKWG*KLIFPLSS-APKLCSNLYPSPR 102
           A  + AV   + PKP  + +PSP     D ++ +  G + I PL    PK+  + Y +P 
Sbjct: 27  AAEAVAVATTETPKPKSQVTPSP-----DRVKWDYRGQRQIIPLGQWLPKVAVDAYVAPN 81

Query: 101 ILVA 90
           +++A
Sbjct: 82  VVLA 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,456,585
Number of Sequences: 219361
Number of extensions: 860601
Number of successful extensions: 2008
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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