ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05c04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468330.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2748 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 212 cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 258 |||||||| ||| ||||||||| ||||||||||||||||| |||||| Sbjct: 62 cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 108
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 212 cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 258 |||||||| ||| ||||||||| ||||||||||||||||| |||||| Sbjct: 34650805 cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 34650851 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tcccgcccgcctccaccccc 273 |||||||||||||||||||| Sbjct: 16466627 tcccgcccgcctccaccccc 16466608
>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E04 Length = 94096 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 212 cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 258 |||||||| ||| ||||||||| ||||||||||||||||| |||||| Sbjct: 7756 cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 7802
>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G06 Length = 122580 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 212 cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 258 |||||||| ||| ||||||||| ||||||||||||||||| |||||| Sbjct: 117420 cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 117466
>emb|AL121756.14|HSDJ726C3 Human DNA sequence from clone RP4-726C3 on chromosome 20 Contains the C20orf185 gene for the possible ortholog of potential ligand_binding protein RYA3 (Rat), the C20orf186 gene for the possible ortholog of potential ligand_binding protein RY2G5 (Rat), the 5' end of the SPAG4L gene for sperm associated antigen 4-like, a novel gene, a FAM16AX (family with sequence similarity 16, member A, X-linked) pseudogene, the BPIL3 gene for bactericidal/permeability-increasing protein-like 3 and a CpG island, complete sequence Length = 129502 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatca 34 |||||||||||||||||||||| Sbjct: 36739 ccatccacccacccaccaatca 36760
>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0023F01, complete sequence Length = 145009 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 143 tggcgccggtgccgacgccgtcgtcg 168 ||||| |||||||||||||||||||| Sbjct: 57389 tggcgacggtgccgacgccgtcgtcg 57414
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 44.1 bits (22), Expect = 0.35 Identities = 38/42 (90%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 230 ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 271 ||||||||| || ||||||||||||||| |||||| |||||| Sbjct: 118283 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 118323
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 44.1 bits (22), Expect = 0.35 Identities = 38/42 (90%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 230 ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 271 ||||||||| || ||||||||||||||| |||||| |||||| Sbjct: 60903 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 60943
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.35 Identities = 38/42 (90%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 230 ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 271 ||||||||| || ||||||||||||||| |||||| |||||| Sbjct: 25334344 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 25334384 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cggcctccgccgccggcgcc 357 |||||||||||||||||||| Sbjct: 21754775 cggcctccgccgccggcgcc 21754756 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 cctcacggcctccgccgccggcgcctcg 360 |||| ||||||||||||||| ||||||| Sbjct: 20577079 cctcccggcctccgccgccgtcgcctcg 20577106
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 143 tggcgccggtgccgacgccgtcgtcg 168 ||||| |||||||||||||||||||| Sbjct: 26532331 tggcgacggtgccgacgccgtcgtcg 26532306 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 cctccgccgccggcgcctcg 360 |||||||||||||||||||| Sbjct: 28260855 cctccgccgccggcgcctcg 28260874 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gcctccgccgccggcgcctc 359 |||||||||||||||||||| Sbjct: 8923817 gcctccgccgccggcgcctc 8923836
>dbj|AK067306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100C22, full insert sequence Length = 5032 Score = 44.1 bits (22), Expect = 0.35 Identities = 38/42 (90%), Gaps = 1/42 (2%) Strand = Plus / Minus Query: 230 ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 271 ||||||||| || ||||||||||||||| |||||| |||||| Sbjct: 172 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 132
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 143 tggcgccggtgccgacgccgtcgtcg 168 ||||| |||||||||||||||||||| Sbjct: 26857595 tggcgacggtgccgacgccgtcgtcg 26857570 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 cctccgccgccggcgcctcg 360 |||||||||||||||||||| Sbjct: 28245434 cctccgccgccggcgcctcg 28245453 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gcctccgccgccggcgcctc 359 |||||||||||||||||||| Sbjct: 8995480 gcctccgccgccggcgcctc 8995499
>gb|AC109509.20| Mus musculus chromosome 14, clone RP23-16M15, complete sequence Length = 216410 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 30975 ccatccacccacccaccaatc 30995 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaat 32 |||||||||||||||||||| Sbjct: 31306 ccatccacccacccaccaat 31325
>gb|AC147054.4| Pan troglodytes BAC clone RP43-145A1 from 7, complete sequence Length = 153627 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 130490 ccatccacccacccaccaatc 130510
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 365 tggaggtcccgggcggcgcgggcgg 389 ||||||||| ||||||||||||||| Sbjct: 1592668 tggaggtcctgggcggcgcgggcgg 1592644 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cgccgcaggcgacggcgggg 207 |||||||||||||||||||| Sbjct: 2473274 cgccgcaggcgacggcgggg 2473293
>gb|AC165293.2| Mus musculus BAC clone RP23-268A5 from chromosome 12, complete sequence Length = 179330 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 98244 ccatccacccacccaccaatc 98224
>gb|AC183833.2| Pan troglodytes BAC clone CH251-141C5 from chromosome 7, complete sequence Length = 155911 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 59718 ccatccacccacccaccaatc 59738
>gb|AC093168.3| Homo sapiens BAC clone RP11-148M21 from 7, complete sequence Length = 148689 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 101527 ccatccacccacccaccaatc 101547
>gb|AC112342.14| Rattus norvegicus 14 BAC CH230-253H12 (Children's Hospital Oakland Research Institute) complete sequence Length = 150292 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 94446 ccatccacccacccaccaatc 94426
>emb|AL591916.8| Human DNA sequence from clone RP11-168B8 on chromosome 1 Contains the 5' end of a novel gene (FLJ36179), complete sequence Length = 159159 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 112330 ccatccacccacccaccaatc 112350
>emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genome; segment 3/16 Length = 349260 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 ccgccggcgcctcggtgctgg 367 ||||||||||||||||||||| Sbjct: 135731 ccgccggcgcctcggtgctgg 135751
>emb|AJ746242.1| Stenotrophomonas maltophilia multidrug efflux pump gene cluster, isolate N531 Length = 9620 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tcggccgcgtgcgcaacctca 337 ||||||||||||||||||||| Sbjct: 6702 tcggccgcgtgcgcaacctca 6722
>gb|DQ429871.1| Sorghum propinquum locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429870.1| Sorghum bicolor voucher PI585454 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429869.1| Sorghum bicolor voucher PI267539 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429868.1| Sorghum bicolor voucher PI267408 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429867.1| Sorghum bicolor voucher PI221607 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429866.1| Sorghum bicolor voucher PI152702 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429865.1| Sorghum bicolor voucher NSL92371 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429864.1| Sorghum bicolor voucher NSL87902 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429863.1| Sorghum bicolor voucher NSL87666 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429862.1| Sorghum bicolor voucher NSL77217 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429861.1| Sorghum bicolor voucher NSL77034 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429860.1| Sorghum bicolor voucher NSL56174 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429859.1| Sorghum bicolor voucher NSL56003 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429858.1| Sorghum bicolor voucher NSL55243 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429857.1| Sorghum bicolor voucher NSL51365 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429856.1| Sorghum bicolor voucher NSL51030 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>gb|DQ429855.1| Sorghum bicolor voucher BTx623 locus pSB1459 genomic sequence Length = 697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 cgccggtgccgacgccgtcgtcgcg 170 ||||||||||| ||||||||||||| Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 agcaccgcctccatttcccgc 259 ||||||||||||||||||||| Sbjct: 3489631 agcaccgcctccatttcccgc 3489611
>gb|AC009093.10| Homo sapiens chromosome 16 clone RP11-426C22, complete sequence Length = 207997 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 201492 ccatccacccacccaccaatc 201472
>emb|AL929518.16| Zebrafish DNA sequence from clone CH211-163F10 in linkage group 2, complete sequence Length = 162473 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 144278 ccatccacccacccaccaatc 144298
>gb|AC007009.2|AC007009 Homo sapiens BAC clone RP11-560C1 from 7p22-p21, complete sequence Length = 152523 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 65626 ccatccacccacccaccaatc 65646
>gb|AC025279.6| Homo sapiens chromosome 16 clone RP11-231C14, complete sequence Length = 171940 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 7524 ccatccacccacccaccaatc 7504
>gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 map 4p16, complete sequence Length = 189805 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 77309 ccatccacccacccaccaatc 77329 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 77173 ccatccacccacccaccaatc 77193
>gb|AC005895.1|AC005895 Homo sapiens chromosome 5, Bac clone 5m9 (LBNL H220), complete sequence Length = 87857 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 17921 ccatccacccacccaccaatc 17941
>emb|AL844548.7| Mouse DNA sequence from clone RP23-263D22 on chromosome 2, complete sequence Length = 198946 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 165342 ccatccacccacccaccaatc 165322
>emb|CT025540.12| Mouse DNA sequence from clone RP24-280B23 on chromosome 12, complete sequence Length = 199060 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaatc 33 ||||||||||||||||||||| Sbjct: 196557 ccatccacccacccaccaatc 196577
>ref|XM_472429.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2634 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 cctcacggcctccgccgccggcgcctcg 360 |||| ||||||||||||||| ||||||| Sbjct: 237 cctcccggcctccgccgccgtcgcctcg 264
>ref|XM_472588.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1281 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cggcctccgccgccggcgcc 357 |||||||||||||||||||| Sbjct: 274 cggcctccgccgccggcgcc 255
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 ccccccgcggcgcgggcggggccg 292 ||||||| |||||||||||||||| Sbjct: 2344309 ccccccggggcgcgggcggggccg 2344286
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24 map C535, complete sequence Length = 174759 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 gcctccgccgccggcgcctc 359 |||||||||||||||||||| Sbjct: 94410 gcctccgccgccggcgcctc 94391
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 cctccgccgccggcgcctcg 360 |||||||||||||||||||| Sbjct: 65657 cctccgccgccggcgcctcg 65676
>gb|AC166357.3| Mus musculus BAC clone RP23-360N1 from chromosome 7, complete sequence Length = 220916 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 340 gcctccgccgccggcgcctcggtgctgg 367 ||||||||||||| |||||| ||||||| Sbjct: 172973 gcctccgccgccgccgcctccgtgctgg 173000
>gb|AF497745.1| Ananas comosus cystatin mRNA, complete cds Length = 732 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 gcctccgccgccggcgcctc 359 |||||||||||||||||||| Sbjct: 159 gcctccgccgccggcgcctc 140
>gb|AY960120.1| Protacanthamoeba bohemica small subunit ribosomal RNA gene, complete sequence Length = 2028 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cccgcccgcctccacccccc 274 |||||||||||||||||||| Sbjct: 203 cccgcccgcctccacccccc 184
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 gcggcgcgggcggggccgccacgg 298 |||||||||||||||||| ||||| Sbjct: 926621 gcggcgcgggcggggccgtcacgg 926644
>ref|XM_755792.1| Ustilago maydis 521 hypothetical protein (UM04738.1) partial mRNA Length = 1794 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cggtgccgacgccgtcgtcg 168 |||||||||||||||||||| Sbjct: 334 cggtgccgacgccgtcgtcg 315
>gb|AC123818.4| Mus musculus BAC clone RP24-266A12 from chromosome 18, complete sequence Length = 169506 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaat 32 |||||||||||||||||||| Sbjct: 151642 ccatccacccacccaccaat 151661
>gb|AC025778.8| Homo sapiens chromosome 16 clone CTD-2504F3, complete sequence Length = 208417 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaat 32 |||||||||||||||||||| Sbjct: 187261 ccatccacccacccaccaat 187280 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaat 32 |||||||||||||||||||| Sbjct: 187132 ccatccacccacccaccaat 187151 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaat 32 |||||||||||||||||||| Sbjct: 187007 ccatccacccacccaccaat 187026 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccatccacccacccaccaat 32 |||||||||||||||||||| Sbjct: 186893 ccatccacccacccaccaat 186912
>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12 Length = 340900 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 caagcaccgcctccatttcc 256 |||||||||||||||||||| Sbjct: 57501 caagcaccgcctccatttcc 57520
>gb|AC074389.8| Homo sapiens BAC clone RP11-510K8 from 7, complete sequence Length = 195782 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 catccacccacccaccaatc 33 |||||||||||||||||||| Sbjct: 84660 catccacccacccaccaatc 84641
>emb|AL160412.14| Human DNA sequence from clone RP5-827E24 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 111824 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 catccacccacccaccaatc 33 |||||||||||||||||||| Sbjct: 100648 catccacccacccaccaatc 100667
>emb|AL031283.26|HS467K16 Human DNA sequence from clone RP3-467K16 on chromosome 1p36.11-36.23 Contains the 3' end of the gene for a novel protein (FLJ25234, KIAA1937, FLJ36564, FLJ39642, FLJ35981), three novel genes, the gene for a novel EF Hand domain-containing protein (MGC4342), the CTRC gene for chymotrypsin C (caldecrin) and a CpG island, complete sequence Length = 175964 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ccatccacccacccaccaat 32 |||||||||||||||||||| Sbjct: 51074 ccatccacccacccaccaat 51055
>emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 on chromosome 22, complete sequence Length = 198570 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 catccacccacccaccaatc 33 |||||||||||||||||||| Sbjct: 93700 catccacccacccaccaatc 93719
>gb|BT009329.1| Triticum aestivum clone wlm24.pk0021.h1:fis, full insert mRNA sequence Length = 2668 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cgccgtcgacgccgcaggcg 198 |||||||||||||||||||| Sbjct: 1314 cgccgtcgacgccgcaggcg 1295
>gb|BC099683.1| Mus musculus heterogeneous nuclear ribonucleoprotein L, mRNA (cDNA clone MGC:106095 IMAGE:6530863), complete cds Length = 2169 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 gcctccgccgccggcgcctcggtgctgg 367 ||||||||||||| |||||| ||||||| Sbjct: 247 gcctccgccgccgccgcctccgtgctgg 220
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 gcggcgcgggcggggccgccacgg 298 |||||||||||||||||| ||||| Sbjct: 242439 gcggcgcgggcggggccgtcacgg 242462
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 gcggcgcgggcggggccgccacgg 298 |||||||||||||||||| ||||| Sbjct: 260542 gcggcgcgggcggggccgtcacgg 260565
>emb|AL606598.3|OSJN00036 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G16, complete sequence Length = 114051 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 cctcacggcctccgccgccggcgcctcg 360 |||| ||||||||||||||| ||||||| Sbjct: 11413 cctcccggcctccgccgccgtcgcctcg 11440
>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12, complete sequence Length = 116952 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 cctcacggcctccgccgccggcgcctcg 360 |||| ||||||||||||||| ||||||| Sbjct: 87707 cctcccggcctccgccgccgtcgcctcg 87734
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gccgtcgacgccgcaggcga 199 |||||||||||||||||||| Sbjct: 1548024 gccgtcgacgccgcaggcga 1548043
>ref|NM_177301.3| Mus musculus heterogeneous nuclear ribonucleoprotein L (Hnrpl), mRNA Length = 2135 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 gcctccgccgccggcgcctcggtgctgg 367 ||||||||||||| |||||| ||||||| Sbjct: 229 gcctccgccgccgccgcctccgtgctgg 202
>gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 99727 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 catccacccacccaccaatc 33 |||||||||||||||||||| Sbjct: 53975 catccacccacccaccaatc 53956
>gb|AC005414.2| Homo sapiens 12p13.3 PAC RPCI4-696F19 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 109370 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ccatccacccacccaccaat 32 |||||||||||||||||||| Sbjct: 15782 ccatccacccacccaccaat 15763
>dbj|AK144684.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730022P12 product:heterogeneous nuclear ribonucleoprotein L, full insert sequence Length = 2181 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 gcctccgccgccggcgcctcggtgctgg 367 ||||||||||||| |||||| ||||||| Sbjct: 206 gcctccgccgccgccgcctccgtgctgg 179
>gb|AC023950.6| Homo sapiens chromosome 11, clone RP11-808N1, complete sequence Length = 211464 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ccatccacccacccaccaat 32 |||||||||||||||||||| Sbjct: 178137 ccatccacccacccaccaat 178118
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ggcgcgggcggggccgccac 296 |||||||||||||||||||| Sbjct: 5304076 ggcgcgggcggggccgccac 5304095 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 cgcggacgggcccgccgtcgacgc 190 |||||||||| ||||||||||||| Sbjct: 4639930 cgcggacggggccgccgtcgacgc 4639907 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 cccgccgtcgacgccgcaggcgac 200 ||||||||||||||||| |||||| Sbjct: 3760681 cccgccgtcgacgccgcgggcgac 3760704
>gb|AY242058.1| Oryza sativa (japonica cultivar-group) MONOCULM 1 (MOC1) gene, complete cds Length = 3176 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 ccccgcggcgcgggcggggccgcc 294 ||||||||||||||||| |||||| Sbjct: 2689 ccccgcggcgcgggcggcgccgcc 2666
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 gccgtcgtcgcggacgggcccgccgtcg 186 |||||||||| || |||||||||||||| Sbjct: 15652 gccgtcgtcgtggccgggcccgccgtcg 15679
>dbj|AK085906.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched library, clone:D830027H13 product:similar to RNA-BINDING PROTEIN XLHNRNPL (FRAGMENT) [Xenopus laevis], full insert sequence Length = 2427 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 gcctccgccgccggcgcctcggtgctgg 367 ||||||||||||| |||||| ||||||| Sbjct: 203 gcctccgccgccgccgcctccgtgctgg 176
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 ccccgcggcgcgggcggggccgcc 294 ||||||||||||||||| |||||| Sbjct: 23932559 ccccgcggcgcgggcggcgccgcc 23932536
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gcgcgggcggggccgccacg 297 |||||||||||||||||||| Sbjct: 7808230 gcgcgggcggggccgccacg 7808211 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 cgccggtgccgacgccgtcg 165 |||||||||||||||||||| Sbjct: 4999793 cgccggtgccgacgccgtcg 4999774
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ccgcggcgcgggcggggccg 292 |||||||||||||||||||| Sbjct: 4358086 ccgcggcgcgggcggggccg 4358067
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 ccgccggcgcctcggtgctg 366 |||||||||||||||||||| Sbjct: 4892405 ccgccggcgcctcggtgctg 4892386
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 cggcctccgccgccggcgcctcggtgct 365 |||||||||||| |||||| |||||||| Sbjct: 1100141 cggcctccgccgtcggcgcgtcggtgct 1100168
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0490F09 Length = 149542 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 ccccgcggcgcgggcggggccgcc 294 ||||||||||||||||| |||||| Sbjct: 62170 ccccgcggcgcgggcggcgccgcc 62147
>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0527E02 Length = 176826 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tcccgcccgcctccaccccc 273 |||||||||||||||||||| Sbjct: 40042 tcccgcccgcctccaccccc 40023
>dbj|AK121647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058N21, full insert sequence Length = 1800 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cggcctccgccgccggcgcc 357 |||||||||||||||||||| Sbjct: 674 cggcctccgccgccggcgcc 655
>gb|BC027206.1| Mus musculus heterogeneous nuclear ribonucleoprotein L, mRNA (cDNA clone MGC:28607 IMAGE:4218471), complete cds Length = 2135 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 gcctccgccgccggcgcctcggtgctgg 367 ||||||||||||| |||||| ||||||| Sbjct: 229 gcctccgccgccgccgcctccgtgctgg 202
>dbj|AK063519.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H06, full insert sequence Length = 2147 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 cctccgccgccggcgcctcg 360 |||||||||||||||||||| Sbjct: 270 cctccgccgccggcgcctcg 289
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 cgggcggggccgccacggag 300 |||||||||||||||||||| Sbjct: 3031653 cgggcggggccgccacggag 3031672
>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20, complete sequence Length = 141915 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cggcctccgccgccggcgcc 357 |||||||||||||||||||| Sbjct: 66392 cggcctccgccgccggcgcc 66373
>gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome 7, complete sequence Length = 221010 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 340 gcctccgccgccggcgcctcggtgctgg 367 ||||||||||||| |||||| ||||||| Sbjct: 79412 gcctccgccgccgccgcctccgtgctgg 79439
>gb|AC132939.23| Mus musculus chromosome 5, clone RP24-91I11, complete sequence Length = 224918 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 catccacccacccaccaatc 33 |||||||||||||||||||| Sbjct: 159082 catccacccacccaccaatc 159101
>gb|M77475.1|BLYSIP1A Hordeum vulgare seed imbitition protein (Sip1) gene, complete cds Length = 4788 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cgccgtcgacgccgcaggcg 198 |||||||||||||||||||| Sbjct: 2858 cgccgtcgacgccgcaggcg 2839 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,778,236 Number of Sequences: 3902068 Number of extensions: 2778236 Number of successful extensions: 89255 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84724 Number of HSP's gapped (non-prelim): 4531 length of query: 409 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 387 effective length of database: 17,147,199,772 effective search space: 6635966311764 effective search space used: 6635966311764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
