Clone Name	bastl05c03
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	106	3e-23
2	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	105	4e-23
3	MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing prote...	96	3e-20
4	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	92	8e-19
5	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	80	2e-15
6	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	78	1e-14
7	MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote...	78	1e-14
8	MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote...	75	1e-13
9	MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote...	72	5e-13
10	MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote...	71	1e-12
11	MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote...	70	2e-12
12	MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote...	61	2e-09
13	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	60	2e-09
14	MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote...	60	3e-09
15	PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a...	57	3e-08
16	PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi...	54	1e-07
17	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	54	2e-07
18	EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb...	53	4e-07
19	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	52	7e-07
20	PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi...	52	7e-07
21	PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind...	51	1e-06
22	PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi...	51	1e-06
23	PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi...	51	1e-06
24	PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi...	51	1e-06
25	EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (...	51	1e-06
26	HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (...	51	2e-06
27	PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-...	50	2e-06
28	NUCL_PONPY (Q5RF26) Nucleolin	50	2e-06
29	NUCL_MACFA (Q4R4J7) Nucleolin	50	2e-06
30	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	50	2e-06
31	EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (...	50	2e-06
32	HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (...	50	3e-06
33	MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)	50	3e-06
34	NUCL_MESAU (P08199) Nucleolin (Protein C23)	50	3e-06
35	MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)	50	3e-06
36	NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO...	50	4e-06
37	PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g...	49	5e-06
38	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	49	5e-06
39	NUCL_RAT (P13383) Nucleolin (Protein C23)	49	6e-06
40	PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-...	49	6e-06
41	HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hn...	49	6e-06
42	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	49	8e-06
43	PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...	49	8e-06
44	PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi...	49	8e-06
45	PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi...	48	1e-05
46	NUCL_CHICK (P15771) Nucleolin (Protein C23)	48	1e-05
47	SXL_CHRRU (O97018) Sex-lethal homolog	47	2e-05
48	SXL_MEGSC (O01671) Sex-lethal homolog	46	4e-05
49	SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)	46	4e-05
50	SXL_MUSDO (O17310) Sex-lethal homolog	46	4e-05
51	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	46	5e-05
52	GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon...	46	5e-05
53	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	46	5e-05
54	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	45	7e-05
55	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	45	7e-05
56	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	45	9e-05
57	PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi...	45	9e-05
58	PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi...	45	9e-05
59	PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi...	45	9e-05
60	PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi...	45	9e-05
61	PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi...	45	9e-05
62	PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi...	45	9e-05
63	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	45	9e-05
64	ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)	45	1e-04
65	NUCL_XENLA (P20397) Nucleolin (Protein C23)	44	2e-04
66	RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interact...	44	2e-04
67	ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E...	44	3e-04
68	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	44	3e-04
69	RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interact...	44	3e-04
70	RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interact...	44	3e-04
71	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	44	3e-04
72	SXL_DROSU (Q24668) Protein sex-lethal	44	3e-04
73	SXL_DROME (P19339) Protein sex-lethal	44	3e-04
74	RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa...	44	3e-04
75	RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interact...	44	3e-04
76	MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing prote...	43	3e-04
77	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	43	3e-04
78	ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo...	43	3e-04
79	ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha...	43	3e-04
80	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	42	6e-04
81	RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p...	42	6e-04
82	YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 i...	42	7e-04
83	DAZ1_CAEEL (Q20870) DAZ protein 1	42	0.001
84	ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu...	42	0.001
85	ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu...	42	0.001
86	ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha...	42	0.001
87	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	42	0.001
88	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	42	0.001
89	YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 i...	41	0.001
90	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	41	0.001
91	RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif pro...	41	0.001
92	RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif pro...	41	0.001
93	RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif pro...	41	0.002
94	ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	41	0.002
95	SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attach...	41	0.002
96	ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2	41	0.002
97	ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	41	0.002
98	SAP49_SCHPO (O14102) Spliceosome-associated protein 49	41	0.002
99	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	41	0.002
100	SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Spli...	40	0.002
101	SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Sp...	40	0.002
102	SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Sp...	40	0.002
103	SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Sp...	40	0.002
104	SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Sp...	40	0.002
105	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	40	0.002
106	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	40	0.003
107	TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran...	39	0.006
108	TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr...	39	0.006
109	TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr...	39	0.006
110	MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phos...	39	0.008
111	ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)	39	0.008
112	PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (E...	39	0.008
113	TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)	38	0.011
114	TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)	38	0.011
115	HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (...	38	0.014
116	MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phos...	38	0.014
117	SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold atta...	37	0.018
118	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	37	0.024
119	GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein ...	37	0.024
120	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	37	0.031
121	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	37	0.031
122	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	37	0.031
123	SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2	36	0.041
124	PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 ...	36	0.041
125	HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn...	36	0.054
126	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	35	0.092
127	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	35	0.092
128	ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimu...	35	0.092
129	RB97D_DROME (Q02926) Ribonucleoprotein RB97D	35	0.092
130	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	35	0.092
131	THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1...	35	0.092
132	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	35	0.092
133	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	35	0.092
134	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	35	0.092
135	THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and expor...	35	0.092
136	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	35	0.092
137	MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos...	35	0.092
138	GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)	35	0.092
139	IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 R...	35	0.12
140	HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (...	35	0.12
141	PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	35	0.12
142	PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5....	35	0.12
143	PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 ...	34	0.16
144	REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2	34	0.16
145	SAFB2_HUMAN (Q14151) Scaffold attachment factor B2	34	0.16
146	RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F...	34	0.16
147	MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA...	34	0.20
148	MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA...	34	0.20
149	DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1	33	0.27
150	PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 ...	33	0.35
151	ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimula...	33	0.35
152	DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding prote...	33	0.35
153	PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 ...	33	0.45
154	BOULE_DROME (Q24207) Protein boule	33	0.45
155	DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding prote...	33	0.45
156	YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 ...	33	0.45
157	ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)	32	0.59
158	ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (P...	32	0.59
159	RNP4F_DROME (Q9W4D2) RNA-binding protein 4F	32	0.78
160	RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-bindin...	32	0.78
161	DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso...	32	0.78
162	DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso...	32	0.78
163	HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4...	32	0.78
164	DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso...	32	0.78
165	ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimu...	32	1.0
166	NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k...	32	1.0
167	NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr...	31	1.3
168	ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimu...	31	1.3
169	U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 aux...	31	1.3
170	U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 aux...	31	1.3
171	NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot...	31	1.3
172	PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppres...	31	1.3
173	NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr...	31	1.3
174	NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr...	31	1.3
175	MLO3_SCHPO (Q09330) Protein mlo3	31	1.3
176	HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)	31	1.3
177	RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15	31	1.3
178	DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso...	31	1.3
179	RU1A_YEAST (P32605) U1 small nuclear ribonucleoprotein A (U1 snR...	31	1.3
180	RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2	31	1.7
181	SYM_BORBU (Q44951) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...	31	1.7
182	ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ...	31	1.7
183	RNP1_CAEEL (Q10667) RNA-binding protein rnp-1	30	2.3
184	NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting...	30	2.9
185	NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD p...	30	2.9
186	RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40	30	2.9
187	NELFE_HUMAN (P18615) Negative elongation factor E (NELF-E) (RD p...	30	2.9
188	HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (...	30	2.9
189	DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protei...	30	3.8
190	ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1	29	5.0
191	RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2	29	5.0
192	RB11B_TOBAC (Q40521) Ras-related protein Rab11B	29	6.6
193	YAS9_SCHPO (Q10145) Hypothetical RNA-binding protein C3H8.09c in...	29	6.6
194	RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h...	29	6.6
195	HDAC6_MOUSE (Q9Z2V5) Histone deacetylase 6 (HD6) (Histone deacet...	28	8.6
196	HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ...	28	8.6
197	RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h...	28	8.6
198	CF170_HUMAN (Q96NH3) Protein C6orf170	28	8.6

---

>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score =  106 bits (264), Expect = 3e-23
 Identities = 52/106 (49%), Positives = 70/106 (66%), Gaps = 2/106 (1%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           SRL VKNLP G  E+R R++F+  G +TD  +  TKDGK R   FIGF++ EEA +A  +
Sbjct: 2   SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61

Query: 294 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLK--KPEYNAKDKT 425
           FN ++IDTS+IT E  +  GDP  PR WS+H+ K  +P+   KD T
Sbjct: 62  FNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDST 107



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK----SRHLAFIGFRTNEEAAEAL 287
           L +KNL     E++L+EVFS+ G V    + + K+      S    F+ +R  E+A +AL
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791

Query: 288 NYFNNTYIDTSKITCEIARKIGDP 359
                  +D  K+   I+ +   P
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKP 815



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +3

Query: 111  SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR--TKDGKSRHLAFIGFRTNEEAAEA 284
            +S++ V+N+P  A  + +RE+FS  GE+   ++ +  T  G  R   F+ F T ++A  A
Sbjct: 831  TSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890

Query: 285  LN 290
             N
Sbjct: 891  FN 892



 Score = 36.2 bits (82), Expect = 0.041
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
 Frame = +3

Query: 105 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAE 281
           A S RL V+NLP  + E+ L ++FS+ G +++    I +   K +  AFI F   E A +
Sbjct: 399 AESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458

Query: 282 ALNYFNNTYID--TSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDKTNS 431
           A +  +          +     +K    DA    S    KK E  A+DK NS
Sbjct: 459 AYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKE--AQDKANS 508

---

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score =  105 bits (263), Expect = 4e-23
 Identities = 51/108 (47%), Positives = 72/108 (66%), Gaps = 2/108 (1%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           SRL VKNLP G  E+R R++F+  G +TD  +  TKDGK R   FIGF++ EEA  ALN+
Sbjct: 2   SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNH 61

Query: 294 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLK--KPEYNAKDKTNS 431
           F+ ++IDT++IT E  +  GDP  PR WS+H+ K  +P+  ++D   S
Sbjct: 62  FHRSFIDTTRITVEFCKSFGDPSKPRAWSKHAQKSSQPKQPSQDSVPS 109



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
 Frame = +3

Query: 111  SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR--TKDGKSRHLAFIGFRTNEEAAEA 284
            +S++ V+N+P  A+++ +RE+FS  GE+   ++ +  T  G  R   F+ F T ++A +A
Sbjct: 823  TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 882

Query: 285  LNYF-NNTYIDTSKITCEIA-RKIGDPDAPRPWSRHSLKKPE 404
             N   ++T++   ++  E A  ++      R  +RH  + P+
Sbjct: 883  FNALCHSTHLYGRRLVLEWADSEVTVQTLRRKTARHFQEPPK 924



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK----SRHLAFIGFRTNEEAAEAL 287
           L +KNL     E+ L+ VFS+ G +    + + K+      S    F+ ++  E+A +AL
Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783

Query: 288 NYFNNTYIDTSKITCEIARKIGDP 359
                  +D  K+   I+ +   P
Sbjct: 784 KQLQGHTVDGHKLEVRISERATKP 807

---

>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1|
          Length = 858

 Score = 96.3 bits (238), Expect = 3e-20
 Identities = 45/83 (54%), Positives = 62/83 (74%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           SRL V+ LP    + RLRE FS+KG VTD K++R  DG SR   F+G+R+ +EA +AL+Y
Sbjct: 2   SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDY 61

Query: 294 FNNTYIDTSKITCEIARKIGDPD 362
           FN T+IDTS+I+ E+A+KIGD +
Sbjct: 62  FNRTFIDTSRISIELAKKIGDEE 84

---

>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 91.7 bits (226), Expect = 8e-19
 Identities = 44/103 (42%), Positives = 69/103 (66%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           SRL VK LPK   E++LRE FS++G+VTD K+++ ++G+SR  AFIG+++ + A  A+ Y
Sbjct: 2   SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61

Query: 294 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDK 422
           FN ++IDT++I  E A+   DP  P  + +   K+ E   KD+
Sbjct: 62  FNKSFIDTARIEVEFAKTFSDPTVPLSF-KEKRKREEQKLKDE 103



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 24/84 (28%), Positives = 44/84 (52%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           SS++ +KNLP  A  K L E+F   G++   +V +  D  +R  AF+ F   +EA  A++
Sbjct: 716 SSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMS 775

Query: 291 YFNNTYIDTSKITCEIARKIGDPD 362
                ++   ++  + A +  DP+
Sbjct: 776 QLEGVHLLGRRLVMQYAEQ--DPE 797

---

>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 14/109 (12%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRK-----------GEVTDAKVIRTKDGKSRHLAFIGFR 260
           SR+ VK LP    E RLR++  ++             ++D K+++ +DG+SR  AFIGFR
Sbjct: 2   SRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGFR 61

Query: 261 TNEEAAEALNYFNNTYIDTSKITCEIARKIGDPDAPRPW---SRHSLKK 398
             E+A + +NYFN T++DTSKI   +A+   DP  P+P     R +LK+
Sbjct: 62  DEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQPMREKRREALKR 110



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 23/82 (28%), Positives = 42/82 (51%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYF 296
           ++ VKNLP  A  K + E+FS  G++   +V +  D  +R  AF+ F   +EA  A++  
Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL 812

Query: 297 NNTYIDTSKITCEIARKIGDPD 362
              ++   ++  E   +  DP+
Sbjct: 813 QGVHLLGRRLVMEFVEQ--DPE 832

---

>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRK---------GEVTDAKVIRTKDGKSRHLAFIGFRTN 266
           SR+ VK LP   +E RLR  F ++          ++TD K+++ K G SR  AFIG+R+ 
Sbjct: 2   SRVIVKGLPIYLEEARLRAHFLKRLQQQGRGSEDQITDVKIVKDKSGNSRRFAFIGYRSE 61

Query: 267 EEAAEALNYFNNTYIDTSKITCEIARKIGDPDAPRPW---SRHSLKK 398
           ++A +A+ YFN ++IDT++I   +A+   DP  P P     R +LK+
Sbjct: 62  QDAFDAIEYFNGSFIDTARIEVAMAKSFADPRVPTPMREKRREALKR 108



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 28/105 (26%), Positives = 51/105 (48%)
 Frame = +3

Query: 108  MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEAL 287
            +S ++ VKNLP  A  K + E+FS  G++   +V +  D  +R  AF+ F    EA  A+
Sbjct: 710  ISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAM 769

Query: 288  NYFNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDK 422
            +     ++   ++  + A +  D D     S+ ++K  +  A  K
Sbjct: 770  DQLQGVHLLGRRLVMQYAEQESD-DVEEQISKMTMKMKKQAAVSK 813

---

>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 13/115 (11%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSR----------KGEVTDAKVIRTKDGKSRHLAFIGFRT 263
           SRL VKNLP   DE  L++ FS             ++TD KV+R +DGK+R   F+GFR+
Sbjct: 2   SRLIVKNLPPYLDEAGLKKHFSTVKDPKSAGFAPSDITDVKVVRARDGKTRRFGFVGFRS 61

Query: 264 NEEAAEALNYFNNTYIDTSKITCEIARKIGDPDAP---RPWSRHSLKKPEYNAKD 419
           +E A  A+ YF+ ++I+++KI+  +A    DP+ P   R   R + ++   +A+D
Sbjct: 62  DETAEAAVKYFDTSFINSTKISVAVAMTFTDPNVPLSSRERKRQAAQRAREDAED 116



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEA 284
           + RL ++NL   A E+  R++FS+ GE+ +  + I TK G+ +  A + F   E A  A
Sbjct: 300 TGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAA 358

---

>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 18/113 (15%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGE---------------VTDAKVIRTKDGKSRHLAF 248
           SR+ VK LP    +  LRE F+++                 +TD K++R ++G+SR   F
Sbjct: 2   SRIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESRRFGF 61

Query: 249 IGFRTNEEAAEALNYFNNTYIDTSKITCEIARKIGDPDAPRPWS---RHSLKK 398
           IG+R  E+A +A+ YFN ++I+TSKI   +A+   DP  P+P     R +LK+
Sbjct: 62  IGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMKEKRREALKR 114



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = +3

Query: 81   QHGNLA--ADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIG 254
            Q GN    ++  S ++ VKNLP  A  K + E+F+  G++   +V +  D  +R  AF+ 
Sbjct: 750  QSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVE 809

Query: 255  FRTNEEAAEALNYFNNTYIDTSKITCEIARK 347
            F   +EA  A++  +  ++   ++  + A +
Sbjct: 810  FLLPKEAENAMDQLHGVHLLGRRLVMQYAEE 840

---

>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 14/109 (12%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRK-----------GEVTDAKVIRTKDGKSRHLAFIGFR 260
           SR+ VK LP    E  L++ F+++           G +TD ++++ ++GKSR  AFIG++
Sbjct: 2   SRVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNREGKSRRFAFIGYK 61

Query: 261 TNEEAAEALNYFNNTYIDTSKITCEIARKIGDPDAPRPW---SRHSLKK 398
             ++A +A+NYF+ ++I TSKI  ++A+   DP  P+      R +LK+
Sbjct: 62  NEQDALDAVNYFDGSFIYTSKIEVDMAKSFADPRVPKSMKEKKREALKR 110



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 20/69 (28%), Positives = 37/69 (53%)
 Frame = +3

Query: 105 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 284
           A + ++ VKNLP  A  K + E+F+  G++   +V +  D  +R  AF+ F   +EA  A
Sbjct: 735 AKNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENA 794

Query: 285 LNYFNNTYI 311
           ++     ++
Sbjct: 795 MDQLQGVHL 803

---

>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKG-EVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEAL 287
           SSR+ VKNLP    E   R+ FS +G +VTD K+I      +RH+ F+G+++ E+AA A+
Sbjct: 4   SSRIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLI-----PARHIGFVGYKSAEDAARAV 58

Query: 288 NYFNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDKTNSGDV---NAP 449
            YFN ++I  S+I+ +IA+ I D             KP++ +  K +S D    NAP
Sbjct: 59  KYFNRSFIRMSRISVDIAKPIAD------------SKPQHKSPSKGSSKDADPKNAP 103

---

>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1|
          Length = 833

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 7/110 (6%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRL----REVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAE 281
           SR+ +KN+P+  D+++L    + +     E+TD  V +TK+G SR  AFIGF+  E+A +
Sbjct: 2   SRIIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADK 61

Query: 282 ALNYFNNTYIDTSKITCEIARKIGDPDAP---RPWSRHSLKKPEYNAKDK 422
           A+ Y N +Y++TS+I  E+ R +    A    RP+S+++ K  E   + K
Sbjct: 62  AIRYLNKSYVETSRI--EVHRALDYRSANEKLRPYSKYASKNIELKLQKK 109



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 20/66 (30%), Positives = 36/66 (54%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           +++ +KNLP  A +K ++ +    G++   +V +  D  +R  AF  F T  EAA A+  
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRA 780

Query: 294 FNNTYI 311
             NT++
Sbjct: 781 LKNTHL 786

---

>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 36/107 (33%), Positives = 58/107 (54%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           ++R+ V  LP      +LR  FS + ++TDA V+       R + F+GF+++E A +A +
Sbjct: 3   NTRVFVSGLPPTFTNDQLRMHFSSRFQITDAHVL-----PKRRIGFVGFKSSEAAQQAAS 57

Query: 291 YFNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDKTNS 431
           YFN TY+  SKI+ EIA         +P     +KK E + K  T++
Sbjct: 58  YFNKTYVKMSKISVEIA---------KPIDSEPVKKAEKHRKGSTSN 95



 Score = 37.0 bits (84), Expect = 0.024
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 90  NLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTN 266
           N+    +SSRL V+NLP  A E  L  VFS+ G++ +  V   T+   S+  A++ +   
Sbjct: 293 NIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEP 352

Query: 267 EEAAEA 284
           + A +A
Sbjct: 353 DAAVQA 358



 Score = 32.0 bits (71), Expect = 0.78
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
 Frame = +3

Query: 108 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK------SRHLAFIGFRTNE 269
           ++S L VKNL      +R  EVF        A++    D K      S    F+ FRT  
Sbjct: 595 VTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKA 654

Query: 270 EAAEALNYFNNTYIDTSKITCEIARKIGD 356
           +A  AL   +   +D  ++    + K  D
Sbjct: 655 QAQAALAAMDGYKLDQHELVVRASNKAMD 683

---

>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
 Frame = +3

Query: 78  QQHGNLAADAM-SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIG 254
           +Q+   AAD   SS L VKNL     +++L+E+FS  G VT +KV+R  +G S+   F+ 
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVA 364

Query: 255 FRTNEEAAEALNYFNNTYIDTSKITCEIARKIGD 356
           F T EEA EA++  +   I++  +   IA++  D
Sbjct: 365 FATPEEATEAMSQLSGKMIESKPLYVAIAQRKED 398



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = +3

Query: 78  QQHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 257
           Q+  + A     + + VKNL +   +  L+  F   G++T A V++  +GKS+   F+ F
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 262

Query: 258 RTNEEAAEALNYFNNTYID 314
              ++AA A+   N    D
Sbjct: 263 ENADDAARAVESLNGHKFD 281

---

>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1|
          Length = 819

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 34/91 (37%), Positives = 53/91 (58%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S+R+ V  LP      +L++ F  +  VTDA V+       R + F+GF+++E A +A++
Sbjct: 3   STRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVL-----PKRRIGFVGFKSSEAAQQAVS 57

Query: 291 YFNNTYIDTSKITCEIARKIGDPDAPRPWSR 383
           YFN TY+  SKI+ +IA+ I    A R  SR
Sbjct: 58  YFNKTYMRMSKISVDIAKPIDAEPAHRKDSR 88



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 90  NLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTN 266
           N+    +S+RL V+NL     E  L  VFS  G++ +  V   T+   S+  A++ +   
Sbjct: 287 NIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADP 346

Query: 267 EEAAEA 284
           + A EA
Sbjct: 347 DAAVEA 352

---

>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL    D+++L E F+  G +T AKV+RT++GKS+   F+ F T EEA +A+   N
Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 382

Query: 300 NTYIDTSKITCEIARK 347
              +    +   IA++
Sbjct: 383 QQIVAGKPLYVAIAQR 398



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 19/78 (24%), Positives = 44/78 (56%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           + L VKN+     +++ +E+F++ G +  A + +  DGK +   F+ +  +E+A +A+  
Sbjct: 218 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 277

Query: 294 FNNTYIDTSKITCEIARK 347
            N++ ++  K+    A+K
Sbjct: 278 LNDSELNGEKLYVGRAQK 295



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S  + +KNL    D K L + FS  G++  +K+   ++GKS+   F+ F     A EA++
Sbjct: 124 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAID 183

Query: 291 YFNNTYIDTSKI 326
             N   ++  +I
Sbjct: 184 ALNGMLLNGQEI 195

---

>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 29/93 (31%), Positives = 47/93 (50%)
 Frame = +3

Query: 78  QQHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 257
           Q+  N    +  + L +KNL    D+++L+E+FS  G VT +KV+    G SR   F+ +
Sbjct: 320 QERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAY 379

Query: 258 RTNEEAAEALNYFNNTYIDTSKITCEIARKIGD 356
              EEA  AL+  N   I    +   +A++  D
Sbjct: 380 SNPEEALRALSEMNGKMIGRKPLYIALAQRKED 412



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 24/58 (41%), Positives = 32/58 (55%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           VKNLPK   E  LR+ F + G ++ A V+R + G SR   F+ F   E AA A+   N
Sbjct: 233 VKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL    D K L E FS  G +   KV     G+S+   F+ F   E A  A++  N  
Sbjct: 140 IKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGM 199

Query: 306 YIDTSKI 326
            ++  ++
Sbjct: 200 LMNDKQV 206

---

>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEAL 287
           S+R+ V NL  G D+  L+E+FS +G V DAKV+  +D G+SR   F+ + +++E  +A+
Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAI 265

Query: 288 NYFNNTYIDTSKITCEIARK 347
           +  N   +D   I    A +
Sbjct: 266 DSLNGVDLDGRSIRVSAAEE 285



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 293
           +L V NLP   D   L  +F R G V   +VI  K  G+SR   F+   T EE   A   
Sbjct: 88  KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147

Query: 294 FNNTYID 314
           FN   ID
Sbjct: 148 FNGYEID 154

---

>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 29/76 (38%), Positives = 44/76 (57%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL  G D+ RLR+ FS  G +T AKV+ T+ G S+   F+ F + EEA +A+   N
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354

Query: 300 NTYIDTSKITCEIARK 347
              + T  +   +A++
Sbjct: 355 GRIVSTKPLYVALAQR 370



 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 25/74 (33%), Positives = 40/74 (54%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KN  +  D+KRLRE+FS  G     KV+    G+SR   F+ +  +EEA +A++  N  
Sbjct: 195 IKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGK 254

Query: 306 YIDTSKITCEIARK 347
            ++   I    A+K
Sbjct: 255 EVNGRMIYVGRAQK 268



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL +  D K L + FS  G +   KV+  + G SR   F+ F T E A  A+   N  
Sbjct: 103 IKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGM 161

Query: 306 YIDTSKI 326
            ++  K+
Sbjct: 162 LLNDRKV 168

---

>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEAL 287
           S+R+ V NL  G D+  L+E+FS +G V DAKV+  +D G+SR   F+ + + +E  +A+
Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAI 266

Query: 288 NYFNNTYIDTSKITCEIARK 347
           +  N   +D   I    A +
Sbjct: 267 DSLNGIDLDGRSIRVSAAEE 286



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 293
           +L V NLP   D   L  +F R G V   +VI  K  G+SR   F+   T EE   A   
Sbjct: 89  KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148

Query: 294 FNNTYID 314
           FN   ID
Sbjct: 149 FNGYEID 155

---

>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 28/76 (36%), Positives = 45/76 (59%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL  G D++RLR+ FS  G +T AKV+  + G+S+   F+ F + EEA +A+   N
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 300 NTYIDTSKITCEIARK 347
              + T  +   +A++
Sbjct: 355 GRIVATKPLYVALAQR 370



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 21/74 (28%), Positives = 42/74 (56%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KN  +  D++RL+++F + G     KV+  + GKS+   F+ F  +E+A +A++  N  
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254

Query: 306 YIDTSKITCEIARK 347
            ++  +I    A+K
Sbjct: 255 ELNGKQIYVGRAQK 268

---

>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 28/76 (36%), Positives = 45/76 (59%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL  G D++RLR+ FS  G +T AKV+  + G+S+   F+ F + EEA +A+   N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 300 NTYIDTSKITCEIARK 347
              + T  +   +A++
Sbjct: 355 GRIVATKPLYVALAQR 370



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 22/74 (29%), Positives = 42/74 (56%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KN  +  D++RL+E+F + G     KV+  + GKS+   F+ F  +E+A +A++  N  
Sbjct: 195 IKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254

Query: 306 YIDTSKITCEIARK 347
            ++  +I    A+K
Sbjct: 255 ELNGKQIYVGRAQK 268



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D K L + FS  G +   KV+  ++G S+   F+ F T E A  A+   N  
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 161

Query: 306 YIDTSKI 326
            ++  K+
Sbjct: 162 LLNDRKV 168

---

>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 28/76 (36%), Positives = 45/76 (59%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL  G D++RLR+ FS  G +T AKV+  + G+S+   F+ F + EEA +A+   N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 300 NTYIDTSKITCEIARK 347
              + T  +   +A++
Sbjct: 355 GRIVATKPLYVALAQR 370



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 22/74 (29%), Positives = 42/74 (56%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KN  +  D++RL+E+F + G     KV+  + GKS+   F+ F  +E+A +A++  N  
Sbjct: 195 IKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254

Query: 306 YIDTSKITCEIARK 347
            ++  +I    A+K
Sbjct: 255 ELNGKQIYVGRAQK 268



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D K L + FS  G +   KV+  ++G S+   F+ F T E A  A+   N  
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 161

Query: 306 YIDTSKI 326
            ++  K+
Sbjct: 162 LLNDRKV 168

---

>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 28/76 (36%), Positives = 45/76 (59%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL  G D++RLR+ FS  G +T AKV+  + G+S+   F+ F + EEA +A+   N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 300 NTYIDTSKITCEIARK 347
              + T  +   +A++
Sbjct: 355 GRIVATKPLYVALAQR 370



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 21/74 (28%), Positives = 42/74 (56%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KN  +  D++RL+++F + G     KV+  + GKS+   F+ F  +E+A +A++  N  
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254

Query: 306 YIDTSKITCEIARK 347
            ++  +I    A+K
Sbjct: 255 ELNGKQIYVGRAQK 268



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D K L + FS  G +   KV+  ++G S+   F+ F T E A  A+   N  
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 161

Query: 306 YIDTSKI 326
            ++  K+
Sbjct: 162 LLNDRKV 168

---

>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 28/76 (36%), Positives = 45/76 (59%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL  G D++RLR+ FS  G +T AKV+  + G+S+   F+ F + EEA +A+   N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 300 NTYIDTSKITCEIARK 347
              + T  +   +A++
Sbjct: 355 GRIVATKPLYVALAQR 370



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 21/74 (28%), Positives = 42/74 (56%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KN  +  D++RL+++F + G     KV+  + GKS+   F+ F  +E+A +A++  N  
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254

Query: 306 YIDTSKITCEIARK 347
            ++  +I    A+K
Sbjct: 255 ELNGKQIYVGRAQK 268



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D K L + FS  G +   KV+  ++G S+   F+ F T E A  A+   N  
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 161

Query: 306 YIDTSKI 326
            ++  K+
Sbjct: 162 LLNDRKV 168

---

>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 28/76 (36%), Positives = 43/76 (56%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL  G D+ RLR+ FS  G +T  KV+ T+ G S+   F+ F + EEA +A+   N
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354

Query: 300 NTYIDTSKITCEIARK 347
              + T  +   +A++
Sbjct: 355 GRIVSTKPLYVALAQR 370



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 39/74 (52%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KN  +  D+KRL+E+FS  G     KV+    G+SR   F+ +  +EEA +A+   N  
Sbjct: 195 IKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGK 254

Query: 306 YIDTSKITCEIARK 347
            ++   +    A+K
Sbjct: 255 EVNGRMVYVGRAQK 268



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL    D K L + FS  G++   KV+  + G SR   F+ F T E A  A+   N  
Sbjct: 103 IKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGM 161

Query: 306 YIDTSKI 326
            ++  K+
Sbjct: 162 LLNDRKV 168

---

>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 728

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 27/69 (39%), Positives = 39/69 (56%)
 Frame = +3

Query: 93  LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEE 272
           L A  + S + V NL      K+L+EVFS  G V  A ++  KDGKSR +  + F  + E
Sbjct: 195 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIE 254

Query: 273 AAEALNYFN 299
           A +A++ FN
Sbjct: 255 AVQAISMFN 263



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNE---EAAEA 284
           R  + N+P     + L+++   K GEVT  +++   +GKSR  A + F+  E   +AAE 
Sbjct: 70  RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 129

Query: 285 LN 290
           LN
Sbjct: 130 LN 131

---

>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 27/76 (35%), Positives = 45/76 (59%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL  G D++RLR+ F+  G +T AKV+  + G+S+   F+ F + EEA +A+   N
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 300 NTYIDTSKITCEIARK 347
              + T  +   +A++
Sbjct: 355 GRIVATKPLYVALAQR 370



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 23/74 (31%), Positives = 39/74 (52%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KN  +  D++RL+E F + G     KV+    GKSR   F+ F  +E+A +A++  N  
Sbjct: 195 IKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGK 254

Query: 306 YIDTSKITCEIARK 347
            ++   I    A+K
Sbjct: 255 DLNGKAIFVGRAQK 268



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D K L + FS  G +   KV+  ++G S+   F+ F T E A  A++  N  
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGM 161

Query: 306 YIDTSKI 326
            ++  K+
Sbjct: 162 LLNDRKV 168

---

>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 33/85 (38%), Positives = 46/85 (54%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S  L + NL   A E+ L+EVF +    T  KV + ++GKS+  AFI F + E+A EALN
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 542

Query: 291 YFNNTYIDTSKITCEIARKIGDPDA 365
             N   I+   I  E+    G P+A
Sbjct: 543 SCNKREIEGRAIRLELQGPRGSPNA 567



 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L  KNLP    +  L+EVF    E+     + +KDGKS+ +A+I F+T  +A +      
Sbjct: 396 LLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQ 451

Query: 300 NTYIDTSKITCEIARKIGDPDAPR-----PWSRHS----LKKPEYNAKDKT 425
            T ID   I+     + G     R      WS  S    L    Y+A ++T
Sbjct: 452 GTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET 502

---

>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 33/85 (38%), Positives = 46/85 (54%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S  L + NL   A E+ L+EVF +    T  KV + ++GKS+  AFI F + E+A EALN
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 541

Query: 291 YFNNTYIDTSKITCEIARKIGDPDA 365
             N   I+   I  E+    G P+A
Sbjct: 542 SCNKREIEGRAIRLELQGPRGSPNA 566



 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L  KNLP    +  L+EVF    E+     + +KDGKS+ +A+I F+T  +A +      
Sbjct: 395 LLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQ 450

Query: 300 NTYIDTSKITCEIARKIGDPDAPR-----PWSRHS----LKKPEYNAKDKT 425
            T ID   I+     + G     R      WS  S    L    Y+A ++T
Sbjct: 451 GTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET 501

---

>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 33/85 (38%), Positives = 46/85 (54%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S  L + NL   A E+ L+EVF +    T  KV + ++GKS+  AFI F + E+A EALN
Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 540

Query: 291 YFNNTYIDTSKITCEIARKIGDPDA 365
             N   I+   I  E+    G P+A
Sbjct: 541 SCNKREIEGRAIRLELQGPRGSPNA 565



 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L  KNLP    +  L+EVF    E+     + +KDGKS+ +A+I F+T  +A +      
Sbjct: 394 LLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQ 449

Query: 300 NTYIDTSKITCEIARKIGDPDAPR-----PWSRHS----LKKPEYNAKDKT 425
            T ID   I+     + G     R      WS  S    L    Y+A ++T
Sbjct: 450 GTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET 500

---

>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 28/76 (36%), Positives = 43/76 (56%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL  G D+ RLR+ F   G +T AKV+ T+ G S+   F+ F + EEA +A+   N
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354

Query: 300 NTYIDTSKITCEIARK 347
              + T  +   +A++
Sbjct: 355 GRIVSTKPLYVALAQR 370



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 25/74 (33%), Positives = 40/74 (54%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KN  +  D+KRLRE+FS  G     KV+    G+SR   F+ +  +EEA +A++  N  
Sbjct: 195 IKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGK 254

Query: 306 YIDTSKITCEIARK 347
            ++   I    A+K
Sbjct: 255 EVNGRMIYVGRAQK 268



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL +  D K L + FS  G +   KV+  + G SR   F+ F T+E A  A+   N  
Sbjct: 103 IKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGM 161

Query: 306 YIDTSKI 326
            ++  K+
Sbjct: 162 LLNDRKV 168

---

>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 729

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 27/69 (39%), Positives = 39/69 (56%)
 Frame = +3

Query: 93  LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEE 272
           L A  + S + V NL      K+L+EVFS  G V  A ++  KDGKSR +  + F  + E
Sbjct: 196 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIE 255

Query: 273 AAEALNYFN 299
           A +A++ FN
Sbjct: 256 AVQAISMFN 264



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNE---EAAEA 284
           R  + N+P     + L+++   K GEVT  +++   +GKSR  A + F+  E   +AAE 
Sbjct: 71  RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130

Query: 285 LN 290
           LN
Sbjct: 131 LN 132

---

>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)
 Frame = +3

Query: 90  NLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNE 269
           NL A  + S + V NL      K+L+EVFS  G V  A +   KDGKSR +  + F    
Sbjct: 216 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 275

Query: 270 EAAEALNYFNNTYI 311
           EA +A++ FN  ++
Sbjct: 276 EAVQAISMFNGQFL 289



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           +R+ + N+P     + ++++   K GEVT  ++ +  +GKSR    + F+  E   +AL 
Sbjct: 91  NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 150

Query: 291 YFNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDKTNSGDVNAP 449
             N    D S     I       +A R   R        +A D   SG VN P
Sbjct: 151 TMNK--YDLSGRPLNIKEDPDGENARRALQRTGTSFQGSHASD-VGSGLVNLP 200

---

>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 33/85 (38%), Positives = 45/85 (52%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S  L + NL   A E+ L+EVF +    T  KV + + GKS+  AFI F + E+A EALN
Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALN 540

Query: 291 YFNNTYIDTSKITCEIARKIGDPDA 365
             N   I+   I  E+    G P+A
Sbjct: 541 SCNKMEIEGRTIRLELQGPRGSPNA 565

---

>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 28/74 (37%), Positives = 40/74 (54%)
 Frame = +3

Query: 90  NLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNE 269
           NL A  + S + V NL      K+L+EVFS  G V  A +   KDGKSR +  + F    
Sbjct: 225 NLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAI 284

Query: 270 EAAEALNYFNNTYI 311
           EA +A++ FN  ++
Sbjct: 285 EAVQAISMFNGQFL 298



 Score = 32.7 bits (73), Expect = 0.45
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           +R+ + N+P     + ++++   K GEVT  ++ +  +GKSR    + F+  E   +AL 
Sbjct: 100 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 159

Query: 291 YFN 299
             N
Sbjct: 160 TMN 162

---

>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
 Frame = +3

Query: 117 RLCVKNLPKGA-DEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           +L ++N+P    D  +L+++F R G V +A + R +DGK    AF+  +       AL  
Sbjct: 148 KLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIALEN 207

Query: 294 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDKTNSGDVNA 446
             +  ID  K+  + A +         W  +   +PE N KD   SG+ +A
Sbjct: 208 TKDLKIDGRKVAVDFAVQ------KNRWEDYKKAQPEMNDKDDNESGNEDA 252

---

>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 29/93 (31%), Positives = 47/93 (50%)
 Frame = +3

Query: 78  QQHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 257
           ++H      A  S + VKN+     E+ LR+ FS+ G +T  K++  + GKS+   F+ F
Sbjct: 292 EKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCF 351

Query: 258 RTNEEAAEALNYFNNTYIDTSKITCEIARKIGD 356
            T EEA +A+  F+        +   IA+K  D
Sbjct: 352 STPEEAIDAVKTFHGQMFHGKPLYVAIAQKKED 384



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           VKNLP+      L+++F + G +   KV   +DGKSR   F+ F   + A  A+   N+T
Sbjct: 116 VKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNST 175

Query: 306 YIDTSKI 326
            +   +I
Sbjct: 176 IVADKEI 182



 Score = 35.4 bits (80), Expect = 0.070
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           + L +KNL     E  LRE F+  G++    + + ++   R  AF+ F   E+A  A   
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260

Query: 294 FNNT 305
            N T
Sbjct: 261 VNGT 264

---

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 25/78 (32%), Positives = 40/78 (51%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           S L +KNL    ++++L+E+FS  G VT  KV+    G SR   F+ +   EEA  A+  
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387

Query: 294 FNNTYIDTSKITCEIARK 347
            N   I    +   +A++
Sbjct: 388 MNGKMIGRKPLYVALAQR 405



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           VKNLPK   +  L++ F + G+++ A V++ + G SR   F+ F + E AA A+   N  
Sbjct: 229 VKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGI 288

Query: 306 YIDTSKITCEIARKIGD 356
            +    +    A+K  D
Sbjct: 289 SLGEDVLYVGRAQKKSD 305



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL    D K L E FS  G +   KV     G+S+   F+ F   E A  A++  N  
Sbjct: 136 IKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGM 195

Query: 306 YIDTSKI 326
            ++  ++
Sbjct: 196 LLNDKQV 202

---

>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 33/85 (38%), Positives = 44/85 (51%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S  L + NL   A E+ L+EVF +    T  KV +   GKS+  AFI F + E+A EALN
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALN 543

Query: 291 YFNNTYIDTSKITCEIARKIGDPDA 365
             N   I+   I  E+    G P+A
Sbjct: 544 SCNKMEIEGRTIRLELQGPRGSPNA 568

---

>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 27/76 (35%), Positives = 44/76 (57%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL  G D++RLR+ F   G +T AKV+  + G+S+   F+ F + EEA +A+   N
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVM-MEGGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 300 NTYIDTSKITCEIARK 347
              + T  +   +A++
Sbjct: 355 GRIVATKPLYVALAQR 370



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 18/58 (31%), Positives = 34/58 (58%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           +KN     +++RL+E+F + G     KV+   +GKS+   F+ F  +E+A +A++  N
Sbjct: 195 IKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D K L + FS  G +   KV+  ++G S+   F+ F T E A  A++  N  
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGM 161

Query: 306 YIDTSKI 326
            ++  K+
Sbjct: 162 LLNDRKV 168

---

>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4|
           protein)
          Length = 689

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 26/67 (38%), Positives = 38/67 (56%)
 Frame = +3

Query: 99  ADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAA 278
           A  + S + V NL      K+L+EVFS  G V  A ++  KDGKSR +  + F  + EA 
Sbjct: 158 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAV 217

Query: 279 EALNYFN 299
           +A++ FN
Sbjct: 218 QAISMFN 224



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNE---EAAEA 284
           R  + N+P     + L+++   K GEVT  +++   +GKSR  A + F+  E   +AAE 
Sbjct: 70  RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 129

Query: 285 LN 290
           LN
Sbjct: 130 LN 131

---

>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
 Frame = +3

Query: 87  GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRT 263
           G+ +     +RL V NL  G D+  L  +F+ +G+V +A+VI  +D G+S+   F+   +
Sbjct: 248 GSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 307

Query: 264 NEEAAEALNYFNNTYIDTSKI 326
           ++E  +A+N  N   +D  +I
Sbjct: 308 SQEVQKAINSLNGADLDGRQI 328

---

>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 24/76 (31%), Positives = 42/76 (55%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L +KNL    D++RL+  FS  G +T AK++  + GKS+   F+ + T EEA +A+   N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425

Query: 300 NTYIDTSKITCEIARK 347
              +    +   +A++
Sbjct: 426 QRMLAGKPLYVALAQR 441



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 20/84 (23%), Positives = 42/84 (50%)
 Frame = +3

Query: 96  AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEA 275
           A  A  + + +KNL     E+   ++F + GE+T   +++ ++ K R   F+ +  +E A
Sbjct: 255 ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECA 314

Query: 276 AEALNYFNNTYIDTSKITCEIARK 347
            +A++  N+      K+    A+K
Sbjct: 315 QKAVDELNDKEYKGKKLYVGRAQK 338

---

>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 25/76 (32%), Positives = 45/76 (59%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L +KNL    D+++LR+ FS  G +T AKV+  +DG+S+   F+ F + EEA +A+   N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 300 NTYIDTSKITCEIARK 347
              + +  +   +A++
Sbjct: 355 GRIVGSKPLYVALAQR 370



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = +3

Query: 78  QQHGNLAADAMS-SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIG 254
           ++   L A A   + + +KN  +  D++ L+E+FS+ G+    KV+R  +GKS+   F+ 
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 237

Query: 255 FRTNEEAAEALNYFNNTYIDTSKITCEIARK 347
           +  +E+A +A+   N   I    I    A+K
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D K L + FS  G +   KV+  ++G S+  AF+ F T E A +A+   N  
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161

Query: 306 YIDTSKI 326
            ++  K+
Sbjct: 162 LLNDRKV 168

---

>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           VKN  +  D+++L+E F   G++T  KV+  +DGKS+   F+ F T E A  A+   N
Sbjct: 187 VKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 25/76 (32%), Positives = 40/76 (52%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNL    D+ RLR  FS  G +T AKV+  ++G+S+   F+ F    EA  A+   N
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348

Query: 300 NTYIDTSKITCEIARK 347
              + +  +   +A++
Sbjct: 349 GRVVGSKPLYVALAQR 364

---

>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 29/77 (37%), Positives = 41/77 (53%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S  L V NL   A E+ L+E+F +    T  K+ +   G+ +  AF+ F T E+A EALN
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALN 516

Query: 291 YFNNTYIDTSKITCEIA 341
             NNT I+   I  E +
Sbjct: 517 SCNNTEIEGRAIRLEFS 533



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 24/65 (36%), Positives = 36/65 (55%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L VKNLP    E  ++ VF    EV   +++  K+G S+ +A+I F+T  EA +AL    
Sbjct: 373 LFVKNLPYRVTEDEMKNVFENALEV---RLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQ 429

Query: 300 NTYID 314
            T +D
Sbjct: 430 GTEVD 434

---

>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 290
           + L V NLP+   +  L ++F + G +    ++R K  GK R +AF+ F   EEA EA++
Sbjct: 171 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 230

Query: 291 YFNNTYID--TSKITCEIARKIG 353
             NN   +  +  +T  +A + G
Sbjct: 231 ALNNVIPEGASQPLTVRLAEEHG 253

---

>SXL_MEGSC (O01671) Sex-lethal homolog|
          Length = 321

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALN 290
           + L V NL +   +++L  +F + G++    ++R K  G  R +AFI F   EEA EA++
Sbjct: 164 TNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 223

Query: 291 YFNNTYID--TSKITCEIARKIG 353
             NN   +  T  +T  +A + G
Sbjct: 224 ALNNVIPEGGTQPLTVRVAEEHG 246

---

>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)|
          Length = 348

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 290
           + L V NLP+   + +L  +F + G +    ++R K  GK R +AF+ F   EEA EA++
Sbjct: 196 TNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 255

Query: 291 YFNNTYID--TSKITCEIARKIGDPDAPRPWSRHSL 392
             NN   +  +  +T  +A + G   A    S+  L
Sbjct: 256 ALNNVIPEGASQPLTVRLAEEHGKAKAQHYMSQLGL 291

---

>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 290
           + L V NLP+   +  L ++F + G +    ++R K  G+ R +AF+ F   EEA EA++
Sbjct: 188 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAIS 247

Query: 291 YFNNTYID--TSKITCEIARKIG 353
             NN   +  +  +T  +A + G
Sbjct: 248 ALNNVIPEGASQPLTVRLAEEHG 270

---

>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEAL 287
           S+R+ V NL  G D+  L  +FS +G+V DAKV+  +D G+SR   F+ + + EE   A+
Sbjct: 187 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAI 246



 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 293
           ++ V NLP  AD   L E+F R G V   +VI  K  G+SR   F+   + EE   A   
Sbjct: 88  KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 294 FNNTYID 314
           FN   +D
Sbjct: 148 FNGYELD 154

---

>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = +3

Query: 108 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEA 284
           MS++L +  L  G D+  LR+ F+  G+V DAKVI  ++ G+SR   F+ F     A  A
Sbjct: 33  MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92

Query: 285 LNYFNNTYIDTSKITCEIARKIGDPDAPRPW 377
           ++  +   ++   I    A     P APR +
Sbjct: 93  ISEMDGKELNGRHIRVNPAN--DRPSAPRAY 121

---

>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEAL 287
           S+R+ V NL  G D+  L  +FS +G+V DAKV+  +D G+SR   F+ + + EE   A+
Sbjct: 193 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAI 252



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 293
           ++ V NL   AD   L E+F R G V   +VI  K  G+SR   F+   + EE   A   
Sbjct: 88  KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 294 FNNTYID 314
           FN   +D
Sbjct: 148 FNGYELD 154

---

>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALN 290
           ++L V NLP   D ++L  +F   G V  A+VI  ++  +SR   F+   T EEA +A+ 
Sbjct: 55  AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 114

Query: 291 YFNNTYIDTSKITCEIARKIGDPD-APR 371
             N   +D  ++T   A   G P+ APR
Sbjct: 115 LLNGYDMDGRQLTVNKAAPRGSPERAPR 142

---

>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 293
           ++ + NL K    + L++ FS KG+V  AKV RT    KS    F+ F + EE   A+  
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244

Query: 294 FNNTYIDTSKI 326
            NN+ ++  KI
Sbjct: 245 LNNSVLEGQKI 255



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 293
           RL V N+P+  +   LR +    G +  A+V+  K  G+SR   F+  +T E+A   +  
Sbjct: 85  RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144

Query: 294 FNNTYIDTSKITCEIARK 347
            N+T I   KI   I  K
Sbjct: 145 LNDTEIGGRKIKVNITEK 162

---

>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +3

Query: 93  LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNE 269
           +A+  +  R  V  L    DE+ L   FS+ GE+ D+K+I  ++ G+SR   F+ F+  +
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 270 EAAEALNYFNNTYIDTSKITCEIARKIG 353
              +A+   N   +D   IT   A+  G
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRG 88

---

>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 23/70 (32%), Positives = 38/70 (54%)
 Frame = +3

Query: 105 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 284
           A  + + VKN+    D+++L+E+F   G     KVIR   GKS+   F+ + T+E A +A
Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255

Query: 285 LNYFNNTYID 314
           +   +   ID
Sbjct: 256 VLDLHGKSID 265



 Score = 35.0 bits (79), Expect = 0.092
 Identities = 18/67 (26%), Positives = 39/67 (58%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL +  ++++L+E FS  G ++ AKV+  + G+ +    + F + EEA +A++  N  
Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364

Query: 306 YIDTSKI 326
            + +  +
Sbjct: 365 IVGSKPL 371



 Score = 32.0 bits (71), Expect = 0.78
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D + L  +FS  G +   KV+   D  S+  A++ F +   A  A+ + N  
Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168

Query: 306 YIDTSKI 326
            ++  ++
Sbjct: 169 RLNNRQV 175

---

>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 23/70 (32%), Positives = 38/70 (54%)
 Frame = +3

Query: 105 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 284
           A  + + VKN+    D+++L+E+F   G     KVIR   GKS+   F+ + T+E A +A
Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255

Query: 285 LNYFNNTYID 314
           +   +   ID
Sbjct: 256 VLDLHGKSID 265



 Score = 35.0 bits (79), Expect = 0.092
 Identities = 18/67 (26%), Positives = 39/67 (58%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL +  ++++L+E FS  G ++ AKV+  + G+ +    + F + EEA +A++  N  
Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364

Query: 306 YIDTSKI 326
            + +  +
Sbjct: 365 IVGSKPL 371



 Score = 32.0 bits (71), Expect = 0.78
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D + L  +FS  G +   KV+   D  S+  A++ F +   A  A+ + N  
Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168

Query: 306 YIDTSKI 326
            ++  ++
Sbjct: 169 RLNNRQV 175

---

>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 23/70 (32%), Positives = 38/70 (54%)
 Frame = +3

Query: 105 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 284
           A  + + VKN+    D+++L+E+F   G     KVIR   GKS+   F+ + T+E A +A
Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255

Query: 285 LNYFNNTYID 314
           +   +   ID
Sbjct: 256 VLDLHGKSID 265



 Score = 35.0 bits (79), Expect = 0.092
 Identities = 18/67 (26%), Positives = 39/67 (58%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL +  ++++L+E FS  G ++ AKV+  + G+ +    + F + EEA +A++  N  
Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364

Query: 306 YIDTSKI 326
            + +  +
Sbjct: 365 VVGSKPL 371



 Score = 32.0 bits (71), Expect = 0.78
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D + L  +FS  G +   KV+   D  S+  A++ F +   A  A+ + N  
Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168

Query: 306 YIDTSKI 326
            ++  ++
Sbjct: 169 RLNNRQV 175

---

>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 23/70 (32%), Positives = 38/70 (54%)
 Frame = +3

Query: 105 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 284
           A  + + VKN+    D+++L+E+F   G     KVIR   GKS+   F+ + T+E A +A
Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255

Query: 285 LNYFNNTYID 314
           +   +   ID
Sbjct: 256 VLDLHGKSID 265



 Score = 35.0 bits (79), Expect = 0.092
 Identities = 18/67 (26%), Positives = 39/67 (58%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL +  ++++L+E FS  G ++ AKV+  + G+ +    + F + EEA +A++  N  
Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364

Query: 306 YIDTSKI 326
            + +  +
Sbjct: 365 IVGSKPL 371



 Score = 32.0 bits (71), Expect = 0.78
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D + L  +FS  G +   KV+   D  S+  A++ F +   A  A+ + N  
Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168

Query: 306 YIDTSKI 326
            ++  ++
Sbjct: 169 RLNNRQV 175

---

>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 23/70 (32%), Positives = 38/70 (54%)
 Frame = +3

Query: 105 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 284
           A  + + VKN+    D+++L+E+F   G     KVIR   GKS+   F+ + T+E A +A
Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255

Query: 285 LNYFNNTYID 314
           +   +   ID
Sbjct: 256 VLDLHGKSID 265



 Score = 35.0 bits (79), Expect = 0.092
 Identities = 18/67 (26%), Positives = 39/67 (58%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL +  ++++L+E FS  G ++ AKV+  + G+ +    + F + EEA +A++  N  
Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364

Query: 306 YIDTSKI 326
            + +  +
Sbjct: 365 IVGSKPL 371



 Score = 32.0 bits (71), Expect = 0.78
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D + L  +FS  G +   KV+   D  S+  A++ F +   A  A+ + N  
Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168

Query: 306 YIDTSKI 326
            ++  ++
Sbjct: 169 RLNNRQV 175

---

>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 23/70 (32%), Positives = 38/70 (54%)
 Frame = +3

Query: 105 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEA 284
           A  + + VKN+    D+++L+E+F   G     KVIR   GKS+   F+ + T+E A +A
Sbjct: 196 ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKA 255

Query: 285 LNYFNNTYID 314
           +   +   ID
Sbjct: 256 VLDLHGKSID 265



 Score = 35.0 bits (79), Expect = 0.092
 Identities = 18/67 (26%), Positives = 39/67 (58%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL +  ++++L+E FS  G ++ AKV+  + G+ +    + F + EEA +A++  N  
Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGR 364

Query: 306 YIDTSKI 326
            + +  +
Sbjct: 365 IVGSKPL 371



 Score = 32.0 bits (71), Expect = 0.78
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +KNL K  D + L  +FS  G +   KV+   D  S+  A++ F +   A  A+ + N  
Sbjct: 110 IKNLDKSIDNRALFYLFSAFGNILSCKVV-CDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168

Query: 306 YIDTSKI 326
            ++  ++
Sbjct: 169 RLNNRQV 175

---

>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +3

Query: 93  LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNE 269
           +A+  +  R  V  L    D++ L   FS+ GEV D+K+I  ++ G+SR   F+ F+  +
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 270 EAAEALNYFNNTYIDTSKITCEIARKIG 353
              +A+   N   +D   IT   A+  G
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRG 88

---

>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 102 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAA 278
           D   + L V  LP+   +  LR +FS  GEV  AK+IR K  G S    F+ + T ++A 
Sbjct: 16  DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75

Query: 279 EALNYFNNTYIDTSKITCEIAR 344
            A+N  N   + +  I    AR
Sbjct: 76  RAINTLNGLRLQSKTIKVSYAR 97



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALN 290
           + L +  LP+   +K + ++FSR G + +++V+  +  G SR +AFI F    EA EA+ 
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165

Query: 291 YFN 299
            FN
Sbjct: 166 SFN 168



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 299
           + NL + ADE  L ++F   G VT+ KVIR     K +   F+     EEAA A+   N
Sbjct: 248 IYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 306

---

>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = +3

Query: 78  QQHGNLAADAMSSR-LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIG 254
           Q  GN       S+ L V NL   A E  LREVF +   +     I    G+++  AFI 
Sbjct: 401 QNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRAKGFAFIE 456

Query: 255 FRTNEEAAEALNYFNNTYIDTSKITCEIARKIGDPDAPRPWSRHS 389
           F + E+A +A++  NNT I+   I  E ++  G     R  S  S
Sbjct: 457 FSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQS 501



 Score = 37.0 bits (84), Expect = 0.024
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S  L VKN+P     + L+E+F       D ++   KDG ++ +A++ F   +EA +AL 
Sbjct: 323 SRTLFVKNIPYSTTVEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFSNEDEANKALE 379

Query: 291 YFNNTYIDTSKI----TCEIARKIGDPDAP 368
                 I+   I    T E ++  G+   P
Sbjct: 380 EKQGAEIEGRSIFVDFTGEKSQNSGNKKGP 409

---

>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1)
          Length = 403

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           + L + NLP   DE+ L  +    G+V   +V+R   G SR + F    + E+    + +
Sbjct: 141 TNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGH 200

Query: 294 FNNTYIDT 317
           FN  +I T
Sbjct: 201 FNGKFIKT 208

---

>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +3

Query: 102 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAA 278
           D   + L V  LP+   ++ LR +FS  GEV  AK+IR K  G S    F+ + T ++A 
Sbjct: 16  DIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75

Query: 279 EALNYFNNTYIDTSKITCEIAR 344
            A++  N   + +  I    AR
Sbjct: 76  RAISTLNGLRLQSKTIKVSYAR 97



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEALN 290
           + L +  LP+   +K + ++FSR G + +++V +    G SR +AFI F    EA EA+ 
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165

Query: 291 YF 296
            F
Sbjct: 166 SF 167



 Score = 32.3 bits (72), Expect = 0.59
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 299
           + NL + ADE  L ++F   G VT+ KVIR     K +   F+     EE+A A+   N
Sbjct: 248 IYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLN 306

---

>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 293
           R  V  L    +++ L + FS+ G++TD+K+I  ++ G+SR   F+ F+  +   +A+  
Sbjct: 7   RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66

Query: 294 FNNTYIDTSKITCEIARKIG 353
            N   +D   IT   A+  G
Sbjct: 67  MNGQELDGRNITVNEAQSRG 86

---

>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2|
          Length = 383

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           + L + NLP   DE+ L  +    G+V   +++R   G SR + F    + E+    + +
Sbjct: 137 TNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITH 196

Query: 294 FNNTYIDT 317
           FN  YI T
Sbjct: 197 FNGKYIKT 204

---

>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2|
           (Suppressor of CDC2 with RNA-binding motif 3)
          Length = 407

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           + L + NLP   DE+ L  +    G+V   +++R   G SR + F    + E+    + +
Sbjct: 135 TNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITH 194

Query: 294 FNNTYIDT 317
           FN  YI T
Sbjct: 195 FNGKYIKT 202

---

>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 293
           R+ V N+P   D+ RL +VFS  G+V  A+V+  ++ G+SR   F+   +  E +EA+  
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251

Query: 294 FNNTYIDTSKITCEIARK 347
            +   +D   I    A +
Sbjct: 252 LDGQTLDGRTIRVNAAEE 269

---

>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 290
           + L V NLP+   + +L  +F + G +    ++R K  G+ R +AF+ +   EEA EA++
Sbjct: 213 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 272

Query: 291 YFNN 302
             NN
Sbjct: 273 ALNN 276

---

>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 290
           + L V NLP+   + +L  +F + G +    ++R K  G+ R +AF+ +   EEA EA++
Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270

Query: 291 YFNN 302
             NN
Sbjct: 271 ALNN 274

---

>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 27/110 (24%), Positives = 52/110 (47%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYF 296
           +L +  L +  +EK L+ VF + G +++  +I+ +  KSR  AFI F    +A  A    
Sbjct: 9   KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68

Query: 297 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDKTNSGDVNA 446
           N   +    I  E A+K       R       ++P  ++++++ SG + +
Sbjct: 69  NGKSLHGKAIKVEQAKKPSFQSGGR-------RRPPASSRNRSPSGSLRS 111

---

>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1) (Suppressor
           of CDC2 with RNA-binding motif 2)
          Length = 406

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           + L + NLP   DE+ L  +    G+V   +++R   G SR + F    + E+    + +
Sbjct: 141 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 200

Query: 294 FNNTYIDT 317
           FN  +I T
Sbjct: 201 FNGKFIKT 208

---

>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1|
          Length = 769

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTD----AKVIRTKDG--KSRHLAFIGFRTNEE 272
           S+++ VKNLP  A +K +RE+FS  G++       K + T  G   +R  AF+ F T+ E
Sbjct: 639 STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTE 698

Query: 273 AAEALNYFNNTYI 311
           AA A+    +T++
Sbjct: 699 AARAMEALKHTHL 711



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 102 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAE 281
           D   SRL   NLP   +    R+       +    +  TK    R  AF+G++  EEA +
Sbjct: 20  DKRQSRLIFLNLPSTLNPDTFRKTLLSPATLKSTTITDTKLVPKRRFAFVGYKDAEEAQK 79

Query: 282 ALNYFNNTY 308
              +F+ TY
Sbjct: 80  VKEWFDGTY 88



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
 Frame = +3

Query: 102 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK------SRHLAFIGFRT 263
           D   S L +K L        L+ V S     + A+V    D K      S    F+GF+T
Sbjct: 531 DEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKT 590

Query: 264 NEEAAEALNYFNNTYIDTSKITCEIARKIGDPD 362
            E A +AL       ID   +  + A++  + D
Sbjct: 591 KEAATKALKALEGFEIDGKSLEVKFAQRGAEDD 623

---

>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNY 293
           RL V NLP      +L E+F+  G V + +++  +   +SR  AF+   + EEA EA+  
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174

Query: 294 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDK-TNSGDVNAPLK 455
           F+ + +    +      K+  P+ PR   R  +     +AK + T  G V++P K
Sbjct: 175 FDGSQVGGRTV------KVNFPEVPRGGEREVM-----SAKIRSTYQGFVDSPHK 218

---

>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 96  AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEE 272
           A D   + L V  LP+   ++  R +F   GE+   K++R K  G+S    F+ +   ++
Sbjct: 33  ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92

Query: 273 AAEALNYFNNTYIDTSKITCEIAR 344
           A +A+N  N   + T  I    AR
Sbjct: 93  AEKAINTLNGLRLQTKTIKVSYAR 116



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 299
           V NL   +DE  L ++F   G V + KVIR     K +   F+     +EAA A+   N
Sbjct: 294 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 352

---

>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 96  AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEE 272
           A D   + L V  LP+   ++  R +F   GE+   K++R K  G+S    F+ +   ++
Sbjct: 45  ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104

Query: 273 AAEALNYFNNTYIDTSKITCEIAR 344
           A +A+N  N   + T  I    AR
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYAR 128



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 299
           V NL   +DE  L ++F   G V + KVIR     K +   F+     +EAA A+   N
Sbjct: 306 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 364

---

>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +3

Query: 93  LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNE 269
           +A+  +  R  V  L    D++ L   F++ G+V D+K+I  ++ G+SR   F+ F+  +
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 270 EAAEALNYFNNTYIDTSKITCEIARKIG 353
              +A+   N   +D   IT   A+  G
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRG 88

---

>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 13/76 (17%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVF--SRKGE----VTDAKVIR-------TKDGKSRHLAFIG 254
           +RLC+ N PK  D+K+LR++   + +GE    + + +V+R          G+S   AF  
Sbjct: 476 TRLCLHNFPKAVDDKQLRKLLLEATRGEKGVRIKECRVMRDLKGVHGKMKGQSLGYAFAE 535

Query: 255 FRTNEEAAEALNYFNN 302
           F+ +E A  AL +FNN
Sbjct: 536 FQKHEHALRALRHFNN 551



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           +RL ++NL     E  L+ VF+  G V +  + +  DGK R  AF+ F+   EA +AL  
Sbjct: 113 ARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKG 172

Query: 294 FN 299
            N
Sbjct: 173 AN 174

---

>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I|
          Length = 219

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 20/70 (28%), Positives = 37/70 (52%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYF 296
           RL V NL    +++ L + FS    +   KV+R ++GK+R   F+ F+ +++  +A    
Sbjct: 31  RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90

Query: 297 NNTYIDTSKI 326
           N  YI +  +
Sbjct: 91  NGKYIGSRPV 100

---

>DAZ1_CAEEL (Q20870) DAZ protein 1|
          Length = 499

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +3

Query: 102 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAE 281
           + + +R+ V   P    E  LRE F +   V D K++++ DG+S+   FI F T ++A E
Sbjct: 63  ELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 122

---

>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
 Frame = +3

Query: 81  QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD------------ 224
           Q+G+  +    + L V  LP+   E  +R +FS  GE+   K+IR K             
Sbjct: 174 QNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAP 233

Query: 225 --GKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEIARKIGD 356
             G+S    F+ +   ++A +A+N  N   +    I    AR   D
Sbjct: 234 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSD 279

---

>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
 Frame = +3

Query: 81  QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD------------ 224
           Q+G+  +    + L V  LP+   E  +R +FS  GE+   K+IR K             
Sbjct: 138 QNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAP 197

Query: 225 --GKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEIARKIGD 356
             G+S    F+ +   ++A +A+N  N   +    I    AR   D
Sbjct: 198 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSD 243

---

>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 102 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAA 278
           D   + L V  LP+   ++  R +F   GE+   K++R K  G+S    F+ +   ++A 
Sbjct: 42  DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101

Query: 279 EALNYFNNTYIDTSKITCEIAR 344
           +A+N  N   + T  I    AR
Sbjct: 102 KAINTLNGLRLQTKTIKVSYAR 123



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 299
           V NL   +DE  L ++F   G V + KVIR     K +   F+     +EAA A+   N
Sbjct: 301 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 359

---

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           +RL ++NL     E  L+ VF++ G V +  + R  DGK R   F+ F+   EA +AL  
Sbjct: 113 ARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKG 172

Query: 294 FN 299
            N
Sbjct: 173 MN 174



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVF-----SRKG-EVTDAKVIR-------TKDGKSRHLAFIG 254
           +RLC+ NLPK  D+K+LR++        KG  + + +V+R          G+S   AF  
Sbjct: 486 TRLCLHNLPKAVDDKQLRKLLLSATSGEKGVRIKECRVMRDLKGVHGNMKGQSLGYAFAE 545

Query: 255 FRTNEEAAEALNYFNN 302
           F+ +E A +AL   NN
Sbjct: 546 FQEHEHALKALRLINN 561

---

>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +3

Query: 93  LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNE 269
           +AA  +  R  V  L    + + L + F+  G+V D+KVI  ++ G+SR   F+ F + +
Sbjct: 1   MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

Query: 270 EAAEALNYFNNTYIDTSKITCEIARKIG 353
              +A+   N   +D   IT   A+  G
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRG 88

---

>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic|
           region
          Length = 220

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEAL 287
           S  + V  LP G  EK L + F++ G++ + ++ R K  G SRH  F+ F   E+A  A 
Sbjct: 90  SGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQ 149

Query: 288 NYFNN 302
              NN
Sbjct: 150 ESMNN 154

---

>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 293
           R  V  L     +  L   FS+ GEV D+K+I  ++ G+SR   F+ F+  +   +A++ 
Sbjct: 7   RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66

Query: 294 FNNTYIDTSKITCEIARKIG 353
            N   +D   IT   A+  G
Sbjct: 67  MNGKELDGRTITVNEAQSRG 86

---

>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 266

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 25/71 (35%), Positives = 35/71 (49%)
 Frame = +3

Query: 87  GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTN 266
           G  AA+A    L V NL     E+ L E+F + G V   K+ + KDGK +  AF+ F+  
Sbjct: 2   GAAAAEA-DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 60

Query: 267 EEAAEALNYFN 299
                A+N  N
Sbjct: 61  VSVPYAMNLLN 71

---

>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 262

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 25/71 (35%), Positives = 35/71 (49%)
 Frame = +3

Query: 87  GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTN 266
           G  AA+A    L V NL     E+ L E+F + G V   K+ + KDGK +  AF+ F+  
Sbjct: 2   GAAAAEA-DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 60

Query: 267 EEAAEALNYFN 299
                A+N  N
Sbjct: 61  VSVPYAMNLLN 71

---

>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 265

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 25/71 (35%), Positives = 35/71 (49%)
 Frame = +3

Query: 87  GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTN 266
           G  AA+A    L V NL     E+ L E+F + G V   K+ + KDGK +  AF+ F+  
Sbjct: 2   GAAAAEA-DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHE 60

Query: 267 EEAAEALNYFN 299
                A+N  N
Sbjct: 61  VSVPYAMNLLN 71

---

>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 290
           + L V  LP+   ++ L+ +F   GE+   K++R K  G+S    F+ +   ++A +A+N
Sbjct: 39  TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98

Query: 291 YFNNTYIDTSKITCEIAR 344
             N   + T  I    AR
Sbjct: 99  TLNGLRLQTKTIKVSYAR 116



 Score = 33.1 bits (74), Expect = 0.35
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 299
           V NL   ADE  L ++F   G VT+ KVIR     K +   F+     +EAA A+   N
Sbjct: 281 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 339

---

>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B)
          Length = 931

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
 Frame = +3

Query: 162 LREVFSRKGEVTDAKVI-RTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEI 338
           L+ +FSR G+V  AKV+   +   +R   F+   T EEA + +N+ + T +    I+ E 
Sbjct: 444 LKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 503

Query: 339 ARKIGDPDAPRPWSRHSLKKPEYNAKDKTNSGDVNAPLK 455
           A+   +P   R   R    +   + K+KT++ D +A LK
Sbjct: 504 AK--SEPAGKRVPDR----RDGDSKKEKTSTSDRSANLK 536

---

>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 290
           + L V  LP+   ++ L+ +F   GE+   K++R K  G+S    F+ +   ++A +A+N
Sbjct: 39  TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98

Query: 291 YFNNTYIDTSKITCEIAR 344
             N   + T  I    AR
Sbjct: 99  TLNGLRLQTKTIKVSYAR 116



 Score = 33.1 bits (74), Expect = 0.35
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 299
           V NL   ADE  L ++F   G VT+ KVIR     K +   F+     +EAA A+   N
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338

---

>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALN 290
           + L V  LP+   ++ L+ +F   GE+   K++R K  G+S    F+ +   ++A +A+N
Sbjct: 39  TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98

Query: 291 YFNNTYIDTSKITCEIAR 344
             N   + T  I    AR
Sbjct: 99  TLNGLRLQTKTIKVSYAR 116



 Score = 33.1 bits (74), Expect = 0.35
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 299
           V NL   ADE  L ++F   G VT+ KVIR     K +   F+     +EAA A+   N
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338

---

>SAP49_SCHPO (O14102) Spliceosome-associated protein 49|
          Length = 335

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +3

Query: 108 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDA-KVIRTKDGKSRHLAFIGFRTNEEAAEA 284
           + + L V NL    DE+ L + FS  G++  A +V R ++G+S+   F+ + + E A  A
Sbjct: 97  IGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAA 156

Query: 285 LNYFNNTYIDTSKITCEIARK 347
           +   NN ++    IT   A K
Sbjct: 157 IEAMNNQFLMNKPITVSYAFK 177

---

>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 28/76 (36%), Positives = 38/76 (50%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S  L + NL   A ++ L EVF +    T  KV +   GK +  AFI F + E+A EALN
Sbjct: 485 SKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHGKPKGYAFIEFASFEDAKEALN 541

Query: 291 YFNNTYIDTSKITCEI 338
             N   I+   I  E+
Sbjct: 542 SCNKMEIEGRTIRLEL 557

---

>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYF 296
           L V NL        LR VF + G V D  + R +  K SR  AF+ F    +A +A++  
Sbjct: 15  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74

Query: 297 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKP 401
           +   +D  ++  ++AR    PD     S HS + P
Sbjct: 75  DGAVLDGRELRVQMARYGRPPD-----SHHSRRGP 104

---

>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYF 296
           L V NL        LR VF + G V D  + R +  K SR  AF+ F    +A +A++  
Sbjct: 15  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74

Query: 297 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKP 401
           +   +D  ++  ++AR    PD     S HS + P
Sbjct: 75  DGAVLDGRELRVQMARYGRPPD-----SHHSRRGP 104

---

>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein) (Putative myelin regulatory factor 1) (MRF-1)
          Length = 220

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYF 296
           L V NL        LR VF + G V D  + R +  K SR  AF+ F    +A +A++  
Sbjct: 15  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74

Query: 297 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKP 401
           +   +D  ++  ++AR    PD     S HS + P
Sbjct: 75  DGAVLDGRELRVQMARYGRPPD-----SHHSRRGP 104

---

>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 220

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYF 296
           L V NL        LR VF + G V D  + R +  K SR  AF+ F    +A +A++  
Sbjct: 15  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74

Query: 297 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKP 401
           +   +D  ++  ++AR    PD     S HS + P
Sbjct: 75  DGAVLDGRELRVQMARYGRPPD-----SHHSRRGP 104

---

>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 221

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYF 296
           L V NL        LR VF + G V D  + R +  K SR  AF+ F    +A +A++  
Sbjct: 16  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

Query: 297 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKP 401
           +   +D  ++  ++AR    PD     S HS + P
Sbjct: 76  DGAVLDGRELRVQMARYGRPPD-----SHHSRRGP 105

---

>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 93  LAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNE 269
           +AA  +  R  V  L      + L   F+  GE+ D+KVI  ++ G+SR   F+ F +  
Sbjct: 1   MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60

Query: 270 EAAEALNYFNNTYIDTSKITCEIARKIG 353
              +A+   N   +D   IT   A+  G
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRG 88

---

>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 293
           R  V  L    +++ L+  FS+ G+V D+K+I  ++ G+SR   F+ F+  +   +A+  
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66

Query: 294 FNNTYIDTSKITCEIARKIG 353
            N   +D   IT   A+  G
Sbjct: 67  MNGKELDGRVITVNEAQSRG 86

---

>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +3

Query: 87  GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDG-KSRHLAFIGFRT 263
           GN A    +  L V  L     E+ LREVFS+ G + D  ++  +   +SR  AF+ F  
Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 168

Query: 264 NEEAAEALNYFNNTYIDTSKITCEIA 341
            ++A EA    N   +D  +I  + +
Sbjct: 169 VDDAKEAKERANGMELDGRRIRVDFS 194

---

>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +3

Query: 87  GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDG-KSRHLAFIGFRT 263
           GN A    +  L V  L     E+ LREVFS+ G + D  ++  +   +SR  AF+ F  
Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 168

Query: 264 NEEAAEALNYFNNTYIDTSKITCEIA 341
            ++A EA    N   +D  +I  + +
Sbjct: 169 VDDAKEAKERANGMELDGRRIRVDFS 194

---

>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +3

Query: 87  GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDG-KSRHLAFIGFRT 263
           GN A    +  L V  L     E+ LREVFS+ G + D  ++  +   +SR  AF+ F  
Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 168

Query: 264 NEEAAEALNYFNNTYIDTSKITCEIA 341
            ++A EA    N   +D  +I  + +
Sbjct: 169 VDDAKEAKERANGMELDGRRIRVDFS 194

---

>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
           (Nucleolar phosphoprotein NOPP34-like protein)
          Length = 269

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNYF 296
           L V +LP+G  E +L+  F + G+V   +V R+K  G S+   F+ F  +E A       
Sbjct: 47  LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106

Query: 297 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDKTN 428
           NN  +    I C +       +     S    KKP+Y A  + N
Sbjct: 107 NNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTRYN 150

---

>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 135 LPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYFNNTYI 311
           LP+   ++ L+ +F   GE+   K++R K  G+S    F+ +   ++A +A+N  N   +
Sbjct: 46  LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105

Query: 312 DTSKITCEIAR 344
            T  I    AR
Sbjct: 106 QTKTIKVSYAR 116



 Score = 33.1 bits (74), Expect = 0.35
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 299
           V NL   ADE  L ++F   G VT+ KVIR     K +   F+     +EAA A+   N
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338

---

>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)|
           (PPIase cyp6) (Rotamase cyp8)
          Length = 432

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNYF 296
           L V  L     ++ L  +FSR G++   +VIR K+ G S   AFI F   E   +A    
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305

Query: 297 NNTYIDTSKITCEIARKI 350
            N  ID S+I  + ++ +
Sbjct: 306 QNVLIDDSRIHVDFSQSV 323

---

>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 153 EKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKI 326
           E+ LREVFSR G ++   V+   + G+SR  AF+ F   +++ EA+   N   +D  +I
Sbjct: 130 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRI 188

---

>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 153 EKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKI 326
           E+ LREVFSR G ++   V+   + G+SR  AF+ F   +++ EA+   N   +D  +I
Sbjct: 132 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRI 190

---

>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 293
           +L +  L    +EK L  VF + G + +  +++ ++  KSR  AF+ F +  +A +A   
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query: 294 FNNTYIDTSKITCEIARK-------IGDPDAPR 371
            N   +D   I  E A K        G P  PR
Sbjct: 69  MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101

---

>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 276

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNYFNN 302
           + ++P+   E +LRE FS+ G VT  ++ R+K  G S+  A++ F  +E A    +  NN
Sbjct: 45  IGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADTMNN 104

Query: 303 TYIDTSKITCE 335
                  + CE
Sbjct: 105 YLFCERLLKCE 115

---

>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B) (HSP27 estrogen response element-TATA
           box-binding protein) (HSP27 ERE-TATA-binding protein)
          Length = 915

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
 Frame = +3

Query: 162 LREVFSRKGEVTDAKVI-RTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEI 338
           L+ +FS+ G+V  AKV+   +   +R   F+   T EEA + +N+ + T +    I+ E 
Sbjct: 422 LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 481

Query: 339 ARKIGDPDAPRPWSRHSLKKPEYNAKDKTNSGDVNAPLK 455
           A+   +P       + S K+     K+K+++ D +  LK
Sbjct: 482 AK--NEPVG----KKTSDKRDSDGKKEKSSNSDRSTNLK 514

---

>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEAL 287
           S  L + NL   AD   + E+F++ GEV   ++    +  + +   ++ F   E+A +AL
Sbjct: 266 SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325

Query: 288 NYFNNTYIDTSKITCEIARKIGDPDAPRPWSR 383
           +     YID   +  + +    + D  R  SR
Sbjct: 326 DALQGEYIDNRPVRLDFSSPRPNNDGGRGGSR 357

---

>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2|
           (G-strand-binding protein 2) (RAP1 localization factor
           6)
          Length = 427

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 23/91 (25%), Positives = 46/91 (50%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           V+NL      + L+E+F   GEV +A +I +K G  R +  + F  NE   +A++ F+  
Sbjct: 126 VRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKFDGA 184

Query: 306 YIDTSKITCEIARKIGDPDAPRPWSRHSLKK 398
                K+   + +    P+A + +S+ + ++
Sbjct: 185 LFMDRKLM--VRQDNPPPEAAKEFSKKATRE 213

---

>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +3

Query: 105 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAE 281
           ++ + + V  +P+   E  L  +F + G + D +++     G +R  AF+ F T E A E
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218

Query: 282 ALNYFNNTYIDTSK 323
           A+  +NN  I + K
Sbjct: 219 AVKLYNNHEIRSGK 232



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
 Frame = +3

Query: 81  QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGE-VTDAKVIRTKDG--KSRHLAFI 251
           +H  +     ++RL V ++PK   ++++ E FS+  E +TD  +    D   K+R   F+
Sbjct: 232 KHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFL 291

Query: 252 GFRTNEEAAEALNYFNNTYIDT--SKITCEIARKIGDPD 362
            +  ++ AA+A     +  +    +  T E A  I DPD
Sbjct: 292 EYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPD 330

---

>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +3

Query: 105 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAE 281
           ++ + + V  +P+   E  L  +F + G + D +++     G +R  AF+ F T E A E
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218

Query: 282 ALNYFNNTYIDTSK 323
           A+  +NN  I + K
Sbjct: 219 AVKLYNNHEIRSGK 232



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
 Frame = +3

Query: 81  QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGE-VTDAKVIRTKDG--KSRHLAFI 251
           +H  +     ++RL V ++PK   ++++ E FS+  E +TD  +    D   K+R   F+
Sbjct: 232 KHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFL 291

Query: 252 GFRTNEEAAEALNYFNNTYIDT--SKITCEIARKIGDPD 362
            +  ++ AA+A     +  +    +  T E A  I DPD
Sbjct: 292 EYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPD 330

---

>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +3

Query: 105 AMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAE 281
           ++ + + V  +P+   E  L  +F + G + D +++     G +R  AF+ F T E A E
Sbjct: 69  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 128

Query: 282 ALNYFNNTYIDTSK 323
           A+  +NN  I + K
Sbjct: 129 AVKLYNNHEIRSGK 142



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
 Frame = +3

Query: 81  QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGE-VTDAKVIRTKDG--KSRHLAFI 251
           +H  +     ++RL V ++PK   ++++ E FS+  E +TD  +    D   K+R   F+
Sbjct: 142 KHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFL 201

Query: 252 GFRTNEEAAEALNYFNNTYIDT--SKITCEIARKIGDPD 362
            +  ++ AA+A     +  +    +  T E A  I DPD
Sbjct: 202 EYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPD 240

---

>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2|
          Length = 991

 Score = 36.2 bits (82), Expect = 0.041
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
 Frame = +3

Query: 96  AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVI-RTKDGKSRHLAFIGFRTNEE 272
           A+ +    L V  L        L+ +FS+ G+V  AKV+   +   +R   F+   T++E
Sbjct: 445 ASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDE 504

Query: 273 AAEALNYFNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDKTNSGDVNAPL 452
           A + +++ + T +    I+ E A+         P  + S  +   + K+K    D   P+
Sbjct: 505 ATKCISHLHRTELHGRMISVEKAKN-------EPSEKKSSDRRACDQKEKVPGPDRPHPV 557

Query: 453 K 455
           K
Sbjct: 558 K 558

---

>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 504

 Score = 36.2 bits (82), Expect = 0.041
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIR-TKDGKSRHLAFIGFRTNEEAAEALNYF 296
           L V  L     ++ L  +FSR G++   +V+R  K G S   AFI F   E A +A    
Sbjct: 248 LFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQAYFKM 307

Query: 297 NNTYIDTSKITCEIARKI 350
            N  +D  +I  + ++ +
Sbjct: 308 QNVLVDDRRIWVDFSQSV 325

---

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 293
           +L +  L    +EK L  VF + G + +  +++ ++  KSR  AF+ F +  +A +    
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68

Query: 294 FNNTYIDTSKITCEIARK-------IGDPDAPR 371
            N   +D   I  E A K        G P  PR
Sbjct: 69  MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPR 101

---

>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 96  AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 272
           A D     + V N+P  A E++L+++FS  G V   +++  ++ GK +   F  ++  E 
Sbjct: 10  AMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQET 69

Query: 273 AAEALNYFN 299
           A  A+   N
Sbjct: 70  ALSAMRNLN 78

---

>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAK-VIRTKDGKSRHLAFIGFRTNEEAAEALNYFNN 302
           V N+P    E+++ E+F++ G V   K V+  + G  +   F  F  +E  A A+   NN
Sbjct: 11  VGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNN 70

Query: 303 TYIDTSKITCE 335
           + +   KI  E
Sbjct: 71  SELGPRKIRVE 81

---

>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 595

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +  LP+   E  L  +  + G++ + +++   +G +R  AF+ F   +EA  A+   NN 
Sbjct: 60  IGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNY 119

Query: 306 YIDTSKI 326
            I T ++
Sbjct: 120 EIRTGRL 126

---

>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEAL-- 287
           +L V  L    DE+ LRE F + G V   K++  K  GK R  AF+ F   +   +A+  
Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183

Query: 288 --NYFNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDKTNSGDVNAP 449
             +     ++D  K    + +K    +  +P    +  KP  N + +   G    P
Sbjct: 184 KQHAIKYVHVDVKKSIYNLDKK----EKQQPGGLANAIKPSLNQQQQQQGGGQQPP 235

---

>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 96  AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 272
           A D     + V N+P  A E++L+++FS  G V   +++  ++ GK +   F  ++  E 
Sbjct: 10  AMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQET 69

Query: 273 AAEALNYFN 299
           A  A+   N
Sbjct: 70  ALSAMRNLN 78

---

>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)|
           (Transcriptional coactivator Aly/REF) (bZIP-enhancing
           factor BEF)
          Length = 256

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +3

Query: 87  GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTN 266
           G  A      +L V NL  G  +  ++E+F+  G +  A V   + G+S   A + F   
Sbjct: 96  GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 155

Query: 267 EEAAEALNYFNNTYID 314
            +A +A+  +N   +D
Sbjct: 156 ADALKAMKQYNGVPLD 171

---

>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 96  AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 272
           A D     + V N+P  A E++L+++FS  G V   +++  ++ GK +   F  ++  E 
Sbjct: 10  AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 69

Query: 273 AAEALNYFN 299
           A  A+   N
Sbjct: 70  ALSAMRNLN 78

---

>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 96  AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 272
           A D     + V N+P  A E++L+++FS  G V   +++  ++ GK +   F  ++  E 
Sbjct: 10  AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 69

Query: 273 AAEALNYFN 299
           A  A+   N
Sbjct: 70  ALSAMRNLN 78

---

>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 96  AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 272
           A D     + V N+P  A E++L+++FS  G V   +++  ++ GK +   F  ++  E 
Sbjct: 10  AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 69

Query: 273 AAEALNYFN 299
           A  A+   N
Sbjct: 70  ALSAMRNLN 78

---

>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export|
           factor-binding protein 1) (REF1-I) (Ally of AML-1 and
           LEF-1) (Aly/REF)
          Length = 254

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +3

Query: 87  GNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTN 266
           G  A      +L V NL  G  +  ++E+F+  G +  A V   + G+S   A + F   
Sbjct: 95  GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 154

Query: 267 EEAAEALNYFNNTYID 314
            +A +A+  +N   +D
Sbjct: 155 ADALKAMKQYNGVPLD 170

---

>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 96  AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEE 272
           A D     + V N+P  A E++L+++FS  G V   +++  ++ GK +   F  ++  E 
Sbjct: 10  AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 69

Query: 273 AAEALNYFN 299
           A  A+   N
Sbjct: 70  ALSAMRNLN 78

---

>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 278

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNYFNN 302
           + ++PK   E +L+E F++ G VT  ++ R+K  G S+  A++ +  +E A    +  NN
Sbjct: 45  IGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNN 104

Query: 303 TYIDTSKITCE 335
                  + CE
Sbjct: 105 YLFCERLLKCE 115

---

>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)|
          Length = 142

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 162 LREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEI 338
           L   FS  GEV ++K+I  ++  +SR   F+ F T E    A+   N   +D   IT   
Sbjct: 3   LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62

Query: 339 ARKIG 353
           A+  G
Sbjct: 63  AQSRG 67

---

>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding|
           subunit (eIF-3 RNA-binding subunit) (eIF3 p33)
           (Translation initiation factor eIF3, p33 subunit)
          Length = 274

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLRE-VFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 293
           L +  + + ADE  LRE +      +    V+R K+ GKSR LAF+ F + E A +AL +
Sbjct: 193 LKIMQVNENADENSLREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRF 252

Query: 294 FN 299
            +
Sbjct: 253 LD 254

---

>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGFRTNEEAAEALNY 293
           +L +  L    +EK L  VF + G + +  +++ ++  KSR  AF+   +  +A +A   
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68

Query: 294 FNNTYIDTSKITCEIARK-------IGDPDAPR 371
            N   +D   I  E A K        G P  PR
Sbjct: 69  MNGKSLDGKAIKVEQATKPFFESGRRGPPPPPR 101

---

>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEALNYF 296
           L V  L +  D+K L   F   G++TD ++ +  +  K R  AF+ F   E+AA A++  
Sbjct: 8   LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67

Query: 297 NNTYIDTSKITCEIAR--KIGDPDAPRPWS 380
           N + +    I   +A+  +I +  +   WS
Sbjct: 68  NESELFGRTIRVNLAKPMRIKEGSSRPVWS 97

---

>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEEAAEALNYF 296
           L V  L +  D+K L   F   G++TD ++ +  +  K R  AF+ F   E+AA A++  
Sbjct: 8   LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67

Query: 297 NNTYIDTSKITCEIAR--KIGDPDAPRPWS 380
           N + +    I   +A+  +I +  +   WS
Sbjct: 68  NESELFGRTIRVNLAKPMRIKEGSSRPVWS 97

---

>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYF 296
           L V  L     ++ L  +FSR G++   +VIR K  G S   AFI F + ++  +A    
Sbjct: 250 LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKM 309

Query: 297 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKK 398
               ID  +I  + ++ +        W   ++KK
Sbjct: 310 QGVLIDDHRIHVDFSQSVS--KLSESWRDATVKK 341

---

>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2|
          Length = 218

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 19/82 (23%), Positives = 38/82 (46%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNY 293
           ++L V NL  G  +  ++E+F+  G +  A V   + G+S   A + F    +A +A+  
Sbjct: 75  AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 134

Query: 294 FNNTYIDTSKITCEIARKIGDP 359
           +    +D   +  ++     DP
Sbjct: 135 YKGVPLDGRPMDIQLVASQIDP 156

---

>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVI-RTKDGKSRHLAFIGFRTNEEAAEALNYF 296
           L V  L        L+ +FS+ G+V  AKV+   +   +R   F+   T++EA + +++ 
Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468

Query: 297 NNTYIDTSKITCEIARKIGDPDAPRPWSRH--SLKKPEYNAKDKTNSGDV 440
           + T +    I+ E A+   +P   +   R    +KK + ++ D+ +S ++
Sbjct: 469 HRTELHGRMISVEKAK--NEPAGKKLSDRKECEVKKEKLSSVDRHHSVEI 516

---

>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 99  ADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKD-GKSRHLAFIGF 257
           A A   +L V  L    DE+ LRE F   G++    ++  KD GK R  AFI F
Sbjct: 110 AGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEF 163

---

>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L V NLP+   E+++ E F R G V   K++  +  +    AF+ F   + A +A N  N
Sbjct: 8   LWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVN 67

---

>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L V NLP+   E+++ E F R G V   K++  +  +    AF+ F   + A +A N  N
Sbjct: 8   LWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVN 67

---

>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1|
          Length = 476

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +3

Query: 135 LPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYFNNTYI 311
           + K   E  LRE FS  G++ D  V+R K  K S+ +AF+ F  + +A  A+   +   +
Sbjct: 32  ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91

Query: 312 ---DTSKITCEIAR 344
              DT  I   IA+
Sbjct: 92  GPNDTKPIKVFIAQ 105



 Score = 32.7 bits (73), Expect = 0.45
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 135 LPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYFNNTY 308
           +PK   E+ LRE F   G++    VI+ K  G+S+ L ++ +    +AA+A+   + ++
Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF 185

---

>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 459

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYF 296
           L V  L     ++ L+ +FSR G +   +VIR K  G S   AFI F   ++  +A    
Sbjct: 250 LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309

Query: 297 NNTYIDTSKITCEIARKI 350
               ID  +I  + ++ +
Sbjct: 310 QGVLIDDHRIHVDFSQSV 327

---

>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +  LP+   E  L  +  + G++ + +++   +G +R  AF+ F   +EA  A+   NN 
Sbjct: 60  IGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNY 119

Query: 306 YIDTSKI 326
            I   ++
Sbjct: 120 EIRNGRL 126

---

>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)|
          Length = 476

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +3

Query: 135 LPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYFNNTYI 311
           + K   E  LRE FS  G++ D  V+R K  K S+ +AF+ F  + +A  A+   +   +
Sbjct: 32  ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91

Query: 312 ---DTSKITCEIAR 344
              DT  I   IA+
Sbjct: 92  GPNDTKPIKVFIAQ 105



 Score = 32.3 bits (72), Expect = 0.59
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 135 LPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYFNNTY 308
           +PK   E+ LRE F   G++    +I+ K  G+S+ L ++ +    +AA+A+   + ++
Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF 185

---

>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYF 296
           L V  L     ++ L  +FSR G +   +VIR K  G S   AFI F   ++  +A    
Sbjct: 250 LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309

Query: 297 NNTYIDTSKITCEIARKI 350
               ID  +I  + ++ +
Sbjct: 310 QGVLIDDHRIHVDFSQSV 327

---

>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEA 275
           +R+ V  +     E  L  VFS  G V   K+I  + G S+   F+ F T +EA
Sbjct: 33  NRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEA 86

---

>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)|
          Length = 476

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +3

Query: 135 LPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNYFNNTYI 311
           + K   E  LRE FS  G++ D  V+R K  K S+ +AF+ F  + +A  A+   +   +
Sbjct: 32  ISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCL 91

Query: 312 ---DTSKITCEIAR 344
              DT  I   IA+
Sbjct: 92  GPSDTKPIKVFIAQ 105



 Score = 32.3 bits (72), Expect = 0.59
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 135 LPKGADEKRLREVFSRKGEVTDAKVIRTK-DGKSRHLAFIGFRTNEEAAEALNYFNNTY 308
           +PK   E+ LRE F   G++    +I+ K  G+S+ L ++ +    +AA+A+   + ++
Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF 185

---

>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic|
           region
          Length = 713

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 22/85 (25%), Positives = 39/85 (45%)
 Frame = +3

Query: 90  NLAADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNE 269
           +LAA      LC+           + E F + G++   KV+R  D  +R  AF+ +  + 
Sbjct: 99  SLAAALSDDELCLS----------VTENFKKYGDLARVKVLR--DNANRPYAFVQYNNDH 146

Query: 270 EAAEALNYFNNTYIDTSKITCEIAR 344
           +A  AL     T ++  ++ CE A+
Sbjct: 147 DAKHALIRAQGTLLNGRRLRCEPAK 171

---

>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)|
          Length = 367

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 299
           V NL   ADE  L ++F   G VT+ KVIR     K +   F+     +EAA A+   N
Sbjct: 288 VYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346

---

>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic|
           cerebellar degeneration-associated antigen)
           (Paraneoplastic limbic encephalitis antigen 21)
          Length = 367

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRT-KDGKSRHLAFIGFRTNEEAAEALNYFN 299
           V NL   ADE  L ++F   G VT+ KVIR     K +   F+     +EAA A+   N
Sbjct: 288 VYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346

---

>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F|
          Length = 941

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEAL 287
           +++ V+NL     ++ L E+FS  G + D +++   + + + +A++ F    EA  A+
Sbjct: 724 NKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAV 781

---

>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein|
           11)
          Length = 281

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           V NL     E+ L E+F + G +T   + + ++GK +   F+ F+  E  + A+   N
Sbjct: 14  VGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71

---

>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 108 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 257
           M + + V  +    DE  +R  F+R G V + K+I  + G S+   F+ F
Sbjct: 38  MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSF 87

---

>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 108 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 257
           M + + V  +    DE  +R  F+R G V + K+I  + G S+   F+ F
Sbjct: 38  MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSF 87

---

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR-TKDGKSRHLAFIGFRTNEEAAEAL 287
           S ++ +  L     E  LRE F + G VTD K+++    G+SR   F+ F       E +
Sbjct: 158 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 217

---

>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 108 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 257
           M + + V  +    DE  +R  F+R G V + K+I  + G S+   F+ F
Sbjct: 38  MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSF 87

---

>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +  LP+   E  L  +  + G++ + +++   +G +R  AF+ F    EA  A+   NN 
Sbjct: 60  IGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNY 119

Query: 306 YIDTSKI 326
            I   ++
Sbjct: 120 EIRNGRL 126

---

>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap|
           binding protein) (NCBP 20 kDa subunit) (CBP20)
           (Fragment)
          Length = 148

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDA-----KVIRTKDGKSRHLAFIGFRTNEEA 275
           S  L V NL     E+++ E+FS+ G+V        KV +T  G      F+ + T  +A
Sbjct: 31  SCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACG----FCFVEYYTRADA 86

Query: 276 AEALNYFNNTYID 314
             A+ + N T +D
Sbjct: 87  GTAMRFINGTRLD 99

---

>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S+ L V+NLP+    + L E FS  G+V  A VI    G+      + F     A +AL+
Sbjct: 149 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALD 208

---

>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 587

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNT 305
           +  LP+   E  L  +  + G++ + +++   +G +R  AF+ F    EA  A+   NN 
Sbjct: 60  IGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAIKQLNNY 119

Query: 306 YIDTSKI 326
            I   ++
Sbjct: 120 EIRNGRL 126

---

>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 475

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFS---RKGEVTDAK---VIRTKDGKSRHLAFIGFRTNEEAA 278
           RL V N+P G  E+ + + F+   R G +T A    V+  +  + ++ AF+ FR+ +E  
Sbjct: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 209

Query: 279 EALNY 293
           +A+ +
Sbjct: 210 QAMAF 214

---

>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (hU2AF(65))
          Length = 475

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFS---RKGEVTDAK---VIRTKDGKSRHLAFIGFRTNEEAA 278
           RL V N+P G  E+ + + F+   R G +T A    V+  +  + ++ AF+ FR+ +E  
Sbjct: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 209

Query: 279 EALNY 293
           +A+ +
Sbjct: 210 QAMAF 214

---

>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 476

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S+ L V+NLP+    + L E FS  G+V  A VI    G+      + F     A +AL+
Sbjct: 152 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALD 211

---

>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)|
          Length = 611

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 168 EVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEI 338
           + FSR G++   K+   KD     + F+ F   + A   +  +NNT     KI C I
Sbjct: 200 DTFSRYGKILSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGI 251

---

>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S+ L V+NLP+    + L E FS  G+V  A VI    G+      + F     A +AL+
Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALD 206

---

>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S+ L V+NLP+    + L E FS  G+V  A VI    G+      + F     A +AL+
Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALD 206

---

>MLO3_SCHPO (Q09330) Protein mlo3|
          Length = 199

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRK-GEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALN 290
           S++ V NLP    E +++E+F +  G      +    +G+S+ +A I F    +A  A  
Sbjct: 55  SKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAYE 114

Query: 291 YFNNTYID-TSKITCEI 338
            +    +D T K+  EI
Sbjct: 115 QYEGRLVDGTRKMKVEI 131

---

>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)|
          Length = 535

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 114 SRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAF--IGFRTNEEAAE 281
           +RL + NL     E+ L+E+FS  GE+++A +        ++ AF  I +R N E A+
Sbjct: 113 NRLYIGNLTSDVTEEELKELFSPYGEISEAFI-----NAEKNFAFLKIDYRANAERAK 165

---

>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 132 NLPKGADEKRLREVFSRKGEVTDAKVI-RTKDGKSRHLAFIGFRTNEEAAEALNYFNNTY 308
           ++P    E+++ ++ S  G V + K++   + G+S+  AFI FR  E +A A+   N   
Sbjct: 24  SIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ 83

Query: 309 IDTSKITC 332
           + +  + C
Sbjct: 84  LGSRFLKC 91

---

>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 108 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 257
           M + + V  +    DE  +R  F+R G V + K+I  + G S+   F+ F
Sbjct: 38  MPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGVSKGYGFVSF 87

---

>RU1A_YEAST (P32605) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1-A)
          Length = 298

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFN 299
           L ++NLP G  E+ L ++   +  V    V        R+LAF+ + T  +A +  N   
Sbjct: 229 LLIQNLPSGTTEQLLSQILGNEALVEIRLV------SVRNLAFVEYETVADATKIKNQLG 282

Query: 300 NTY-IDTSKITCEIAR 344
           +TY +  + +T   A+
Sbjct: 283 STYKLQNNDVTIGFAK 298

---

>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR-TKDGKSRHLAFIGFRTNEEAAEAL 287
           S+ + V  LP    E  +  VFS+ GE+ +  ++R  K GKS+   F+ +        A+
Sbjct: 35  SAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 94

Query: 288 NYFNNTYI 311
           + FN   I
Sbjct: 95  DNFNGIKI 102

---

>SYM_BORBU (Q44951) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 734

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 297 NNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKKPEYNAKDKTNSGDVNAPLK 455
           N+ Y+D  KI  ++ + I +PD  + W+ ++LK  +   +D      +   LK
Sbjct: 185 NHLYLDLPKIKTKLEKWIKNPDTSKNWNTNALKMTKAFLRDGLKERAITRDLK 237

---

>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNY 293
           +L +  L     ++ LRE F + G +TD  V+R  + K SR   F+ + + +E   A+  
Sbjct: 15  KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74

Query: 294 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKK 398
             +  +D   +  E  R +   D+ RP +  ++KK
Sbjct: 75  RPHK-VDGRVV--EPKRAVSREDSSRPGAHLTVKK 106

---

>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1|
          Length = 305

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 108 MSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR 215
           M S+L V NLP   D  +L++VF    +VT+  +++
Sbjct: 1   MPSKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVK 36

---

>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1|
           protein) (Nuclear polyadenylated RNA-binding protein 1)
          Length = 414

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYF 296
           R+ +KNLP+G   + L+++       T    + T+D        + F + E   EAL   
Sbjct: 201 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDG--TGALEFPSEEILVEALERL 258

Query: 297 NNTYIDTSKITCE 335
           NN     S IT E
Sbjct: 259 NNIEFRGSVITVE 271

---

>NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD protein)|
          Length = 375

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 162 LREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEIA 341
           LR  FS  G + D  +        R+ AF+ +   E A +A+   N T +++ ++   IA
Sbjct: 280 LRGAFSPFGNIIDLSM-----DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 334

Query: 342 RK 347
           RK
Sbjct: 335 RK 336

---

>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40|
          Length = 350

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +3

Query: 147 ADEKRLREV---FSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDT 317
           AD  R R++   F   G++ + ++        R+ AFI +   E+A  AL+  NN+ +  
Sbjct: 106 ADNTRTRDLEKHFEPYGKIVNVRI-------RRNFAFIQYEAQEDATRALDASNNSKLMD 158

Query: 318 SKITCEIARKIGD 356
             I+ E A K  D
Sbjct: 159 KVISVEYAVKDDD 171

---

>NELFE_HUMAN (P18615) Negative elongation factor E (NELF-E) (RD protein)|
          Length = 380

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 162 LREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEALNYFNNTYIDTSKITCEIA 341
           LR  FS  G + D  +        R+ AF+ +   E A +A+   N T +++ ++   IA
Sbjct: 276 LRGAFSPFGNIIDLSM-----DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 330

Query: 342 RK 347
           RK
Sbjct: 331 RK 332

---

>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
 Frame = +3

Query: 81  QHGNLAADAMSSRLCVKNLPKGADEKRLREVFSRKGE-VTDAKVIRTKDG--KSRHLAFI 251
           +H  +     ++RL V ++PK   ++ + E FS+  E + D  +    D   K+R   F+
Sbjct: 235 KHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFL 294

Query: 252 GFRTNEEAAEALNYFNNTYIDT--SKITCEIARKIGDPD 362
            +  ++ AA+A     +  +    + +T E A  + +PD
Sbjct: 295 EYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPD 333

---

>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)|
          Length = 229

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 120 LCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGF 257
           L V  +    DE  +RE F++ G V + K+I  + G  +   F+ F
Sbjct: 49  LFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYF 94

---

>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEAL 287
           ++ V  L     +  +RE +S+ GE+TD  V+R    K SR   F+ F    E   A+
Sbjct: 24  KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81

---

>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2|
          Length = 322

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 111 SSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIR-TKDGKSRHLAFIGFRTNEEAAEAL 287
           S+ + +  LP    E  +  VFS+ GE+ +  ++R  K GKS+   F+ +        A+
Sbjct: 35  SAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAV 94

Query: 288 NYFNNTYI 311
           + FN   I
Sbjct: 95  DNFNGIKI 102

---

>RB11B_TOBAC (Q40521) Ras-related protein Rab11B|
          Length = 217

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = +3

Query: 126 VKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGKS---RHLAFIGFRTNEEAAEALNYF 296
           +K L    D+  +  +   K ++   + + T+D K+   R   F    +  E+    N F
Sbjct: 109 LKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAF 168

Query: 297 NNTYIDTSKITCEIARKIGDPDAPRP 374
                +  K+ C  A ++GD  A  P
Sbjct: 169 TEVLTEIYKVVCRKALEVGDDPAALP 194

---

>YAS9_SCHPO (Q10145) Hypothetical RNA-binding protein C3H8.09c in chromosome I|
          Length = 738

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 111 SSRLCVKNL-PKGADEKRLREVFSRKGEVTDAKVIRTKDGKSRHLAFIGFRTNEEAAEAL 287
           +SRL + +L  K   ++ L +VF   G +    V++   G      F+ F TNE+ A AL
Sbjct: 362 ASRLFLGHLNTKSLSKRNLWKVFKIYGPLAQI-VLKANYG------FVQFFTNEDCARAL 414

Query: 288 NYFNNTYIDTSKITCEIAR 344
           N     ++   K+  EI++
Sbjct: 415 NAEQGNFVRGQKLHLEISK 433

---

>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNY 293
           +L +  L     +  LRE F + G++TD  V+R    K SR   F+ +   EE   +++ 
Sbjct: 28  KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87

Query: 294 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKK----------PEYNAKDKTNS 431
             +  +D   +  E  R +   D+ RP +  ++KK           EY+ +D + S
Sbjct: 88  RPHK-VDGRVV--EPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSES 140

---

>HDAC6_MOUSE (Q9Z2V5) Histone deacetylase 6 (HD6) (Histone deacetylase mHDA2)|
          Length = 1149

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 102 DAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRT 218
           +  SSRL VK LP  A     +E+ + KG+V +  V +T
Sbjct: 843 ECSSSRLVVKKLPPTASPVSAKEMTTPKGKVPEESVRKT 881

---

>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 96  AADAMSSRLCVKNLPKGADEKRLREVFSRKGEVTDAKV-IRTKDGKSRHLAFIGFRTNEE 272
           AA     ++ +  L     +K L++ FS+ GEV D  + +    G+SR   F+ F+ +E 
Sbjct: 91  AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 150

Query: 273 AAEALN 290
             + ++
Sbjct: 151 VDKVMD 156

---

>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +3

Query: 117 RLCVKNLPKGADEKRLREVFSRKGEVTDAKVIRTKDGK-SRHLAFIGFRTNEEAAEALNY 293
           +L +  L     +  LRE F + G++TD  V+R    K SR   F+ +   EE   +++ 
Sbjct: 28  KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87

Query: 294 FNNTYIDTSKITCEIARKIGDPDAPRPWSRHSLKK 398
             +  +D   +  E  R +   D+ RP +  ++KK
Sbjct: 88  RPHK-VDGRVV--EPKRAVSREDSARPGAHLTVKK 119

---

>CF170_HUMAN (Q96NH3) Protein C6orf170|
          Length = 1247

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -3

Query: 362 IRVTNLPSNLTGDLRSVNVCIVEIVEGLRCLFIGSET---NKCKMPALSILGSDDFGVRH 192
           +R  +LP+     LR V  C+++I++  R + + SE    +        I G  DF +  
Sbjct: 796 VRNQDLPNKTEYSLREVPTCVIDIID--RLIILNSEAKIRSLFNYEQSHIFGLRDFIIDG 853

Query: 191 LALPREHL 168
           L++ R H+
Sbjct: 854 LSVERNHV 861


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,376,815
Number of Sequences: 219361
Number of extensions: 831481
Number of successful extensions: 3062
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 2878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3043
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---