ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05b10 |
|---|---|
| Clone Library Name | barley_pub |
>ACOC_CUCMA (P49608) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 85.1 bits (209), Expect = 4e-17 Identities = 39/49 (79%), Positives = 45/49 (91%) Frame = +2 Query: 227 EHAYSNILTSLPKPGGGEYGKFYSLPALNDPRIDKLPYSIRILLESAIR 373 E+ + LTSLPKPGGGE+GK+YSLP+LNDPRID+LPYSIRILLESAIR Sbjct: 4 ENPFKENLTSLPKPGGGEFGKYYSLPSLNDPRIDRLPYSIRILLESAIR 52
>ACOC_ARATH (Q42560) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 79.3 bits (194), Expect = 2e-15 Identities = 37/50 (74%), Positives = 44/50 (88%) Frame = +2 Query: 224 TEHAYSNILTSLPKPGGGEYGKFYSLPALNDPRIDKLPYSIRILLESAIR 373 +E+ + +IL +L KP GGE+G +YSLPALNDPRIDKLPYSIRILLESAIR Sbjct: 3 SENPFRSILKALEKPDGGEFGNYYSLPALNDPRIDKLPYSIRILLESAIR 52
>IREB2_RAT (Q62751) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = +2 Query: 272 GGEYGKFYSLPALNDPRIDKLPYSIRILLESAIR 373 G KF+++P L + D LPYSIR+LLE+A+R Sbjct: 19 GSSQKKFFNVPKLGGTKYDILPYSIRVLLEAAVR 52
>IREB2_MOUSE (Q811J3) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = +2 Query: 272 GGEYGKFYSLPALNDPRIDKLPYSIRILLESAIR 373 G KF+++P L + D LPYSIR+LLE+A+R Sbjct: 19 GNSQKKFFNVPKLGGTKYDILPYSIRVLLEAAVR 52
>IREB1_HUMAN (P21399) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/29 (58%), Positives = 23/29 (79%) Frame = +2 Query: 287 KFYSLPALNDPRIDKLPYSIRILLESAIR 373 KF++L L D R +LP+SIR+LLE+AIR Sbjct: 20 KFFNLNKLEDSRYGRLPFSIRVLLEAAIR 48
>IREB1_RAT (Q63270) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/29 (55%), Positives = 23/29 (79%) Frame = +2 Query: 287 KFYSLPALNDPRIDKLPYSIRILLESAIR 373 KF++L L D R +LP+SIR+LLE+A+R Sbjct: 20 KFFNLNKLEDSRYGRLPFSIRVLLEAAVR 48
>IREB1_CHICK (Q90875) Iron-responsive element binding protein (IRE-BP) (Iron| regulatory protein) (IRP) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/29 (58%), Positives = 23/29 (79%) Frame = +2 Query: 287 KFYSLPALNDPRIDKLPYSIRILLESAIR 373 KF++L L D R +LP+SIR+LLE+AIR Sbjct: 20 KFFNLSKLEDVRYARLPFSIRVLLEAAIR 48
>ACOC_CAEEL (Q23500) Probable aconitate hydratase, cytoplasmic (EC 4.2.1.3)| (Citrate hydro-lyase) (Aconitase) Length = 887 Score = 37.4 bits (85), Expect = 0.009 Identities = 19/47 (40%), Positives = 31/47 (65%) Frame = +2 Query: 233 AYSNILTSLPKPGGGEYGKFYSLPALNDPRIDKLPYSIRILLESAIR 373 A++N++ +L G K++ L LND R ++LP SI+ LLE+A+R Sbjct: 2 AFNNLIRNLAI--GDNVYKYFDLNGLNDARYNELPISIKYLLEAAVR 46
>IREB1_MOUSE (P28271) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 36.6 bits (83), Expect = 0.015 Identities = 15/29 (51%), Positives = 23/29 (79%) Frame = +2 Query: 287 KFYSLPALNDPRIDKLPYSIRILLESAIR 373 +F++L L D R +LP+SIR+LLE+A+R Sbjct: 20 RFFNLNKLEDSRYGRLPFSIRVLLEAAVR 48
>ACON_BACSU (P09339) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 908 Score = 36.2 bits (82), Expect = 0.020 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%) Frame = +2 Query: 275 GEYGKFYSLPALNDP---RIDKLPYSIRILLESAIR 373 G+ +YSL AL D ++ KLPYSI++LLES +R Sbjct: 22 GKTYHYYSLKALEDSGIGKVSKLPYSIKVLLESVLR 57
>IREB1_RABIT (Q01059) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 34.7 bits (78), Expect = 0.058 Identities = 15/29 (51%), Positives = 23/29 (79%) Frame = +2 Query: 287 KFYSLPALNDPRIDKLPYSIRILLESAIR 373 KF++L L+ R +LP+SIR+LLE+A+R Sbjct: 20 KFFNLNKLDYSRYGRLPFSIRVLLEAAVR 48
>ACON_STAES (Q8CPC2) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Frame = +2 Query: 275 GEYGKFYSLPALNDP---RIDKLPYSIRILLESAIR 373 G+ +Y L L + +I KLPYSIR+LLES +R Sbjct: 17 GQSYTYYDLQTLEEKGLAKISKLPYSIRVLLESVLR 52
>ACON_STAEQ (Q5HPJ0) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Frame = +2 Query: 275 GEYGKFYSLPALNDP---RIDKLPYSIRILLESAIR 373 G+ +Y L L + +I KLPYSIR+LLES +R Sbjct: 17 GQSYTYYDLQTLEEKGLAKISKLPYSIRVLLESVLR 52
>ACON_STAAR (Q6GH55) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 33.1 bits (74), Expect = 0.17 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%) Frame = +2 Query: 275 GEYGKFYSLPALNDP---RIDKLPYSIRILLESAIR 373 G+ +Y L A+ + ++ KLPYSIR+LLES +R Sbjct: 17 GQSYTYYDLKAVEEQGITKVSKLPYSIRVLLESLLR 52
>ACON_STAAW (P63434) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 31.6 bits (70), Expect = 0.49 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Frame = +2 Query: 275 GEYGKFYSLPALNDPRIDK---LPYSIRILLESAIR 373 G+ +Y L A+ + I K LPYSIR+LLES +R Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLR 52
>ACON_STAAS (Q6G9K9) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 31.6 bits (70), Expect = 0.49 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Frame = +2 Query: 275 GEYGKFYSLPALNDPRIDK---LPYSIRILLESAIR 373 G+ +Y L A+ + I K LPYSIR+LLES +R Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLR 52
>ACON_STAAN (P99148) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 31.6 bits (70), Expect = 0.49 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Frame = +2 Query: 275 GEYGKFYSLPALNDPRIDK---LPYSIRILLESAIR 373 G+ +Y L A+ + I K LPYSIR+LLES +R Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLR 52
>ACON_STAAM (P63433) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 31.6 bits (70), Expect = 0.49 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Frame = +2 Query: 275 GEYGKFYSLPALNDPRIDK---LPYSIRILLESAIR 373 G+ +Y L A+ + I K LPYSIR+LLES +R Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLR 52
>ACON_STAAC (Q5HG69) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 31.6 bits (70), Expect = 0.49 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Frame = +2 Query: 275 GEYGKFYSLPALNDPRIDK---LPYSIRILLESAIR 373 G+ +Y L A+ + I K LPYSIR+LLES +R Sbjct: 17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLR 52
>IREB2_HUMAN (P48200) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 31.2 bits (69), Expect = 0.64 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = +2 Query: 287 KFYSLPALNDPRIDKLPYSIRILLESAIR 373 KF+ + L + D LPYSIR+LLE+A+R Sbjct: 24 KFFDVSKLGT-KYDVLPYSIRVLLEAAVR 51
>UBP30_HUMAN (Q70CQ3) Ubiquitin carboxyl-terminal hydrolase 30 (EC 3.1.2.15)| (Ubiquitin thioesterase 30) (Ubiquitin-specific-processing protease 30) (Deubiquitinating enzyme 30) Length = 517 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +3 Query: 261 LSPGVVNMGNSTAFLH*MIQGSISCP 338 L PG+VN+GN T F++ ++QG +CP Sbjct: 66 LVPGLVNLGN-TCFMNSLLQGLSACP 90
>ACON_FRATH (Q2A1K3) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 937 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = +2 Query: 248 LTSLPKPGGGEYGKFYSLPALNDPR---IDKLPYSIRILLESAIR 373 +T L G+ YSL L+ + +LPYSIR+LLE+ +R Sbjct: 7 ITKLQIEDKGKKYSLYSLKKLSQELGKDVTRLPYSIRVLLENQLR 51
>HYIN1_BRAJA (P59385) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)| (Indole-3-acetamide hydrolase) Length = 524 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -3 Query: 335 AAYRSLDHLVQEGCRISHIHHPRA*GGWSKYC 240 A R+ DHL + G R+S + P G W +C Sbjct: 334 ALRRAADHLERSGYRVSEVEVPDINGVWQTWC 365
>ACON_STRMU (Q59938) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 888 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +2 Query: 314 DPRIDKLPYSIRILLESAIR 373 D +D LPY+I+ILLES +R Sbjct: 28 DIELDSLPYTIKILLESLLR 47
>ACON_BRAJA (P70920) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 906 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%) Frame = +2 Query: 290 FYSLPALND---PRIDKLPYSIRILLESAIR 373 +YSLP I KLPYS+++LLE+ +R Sbjct: 22 YYSLPTAEKNGLKGISKLPYSMKVLLENLLR 52
>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 961 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 272 GGEYGKFYSLPALNDPRIDKLPYSIRILLESAIR 373 G + + Y L A+ P +KLPYS+++L E+ +R Sbjct: 44 GDKSYQIYRLDAV--PNTEKLPYSLKVLAENLLR 75
>ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)| Length = 937 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/28 (42%), Positives = 22/28 (78%) Frame = +2 Query: 290 FYSLPALNDPRIDKLPYSIRILLESAIR 373 +Y+L A+ P ++KLPYS+++L E+ +R Sbjct: 23 YYALSAV--PGMEKLPYSLKVLGENLLR 48
>ACON_RICPR (Q9ZCF4) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 878 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = +2 Query: 323 IDKLPYSIRILLESAIR 373 + KLPYS+R+LLE+ +R Sbjct: 36 LKKLPYSLRVLLENVLR 52
>ACON_LEGPH (P37032) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) (Major iron-containing protein) (MICP) (IP210) Length = 891 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Frame = +2 Query: 275 GEYGKFYSLPALNDPR---IDKLPYSIRILLESAIR 373 G+ +YSL + I++LPYS+++LLE+ +R Sbjct: 18 GKTYNYYSLKEAENKHFKGINRLPYSLKVLLENLLR 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,479,296 Number of Sequences: 219361 Number of extensions: 511670 Number of successful extensions: 1108 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1091 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1108 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
