ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05b08 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 84.3 bits (207), Expect = 1e-16 Identities = 39/91 (42%), Positives = 59/91 (64%) Frame = +2 Query: 170 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVL 349 PC +++ ++K DLE D K+E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 350 PSEDHTIQKLLLLYLEIIDKRDAAGRVLPEM 442 P ++HTI+KLLL++ EI+ K A G++L EM Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKLLQEM 96
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 84.3 bits (207), Expect = 1e-16 Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 1/96 (1%) Frame = +2 Query: 158 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 334 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 335 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEM 442 +R+VLP +DHTI+KLLL++ EI+ K GR+L EM Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEM 98
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 84.3 bits (207), Expect = 1e-16 Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 1/96 (1%) Frame = +2 Query: 158 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 334 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 335 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEM 442 +R+VLP +DHTI+KLLL++ EI+ K GR+L EM Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEM 98
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 84.3 bits (207), Expect = 1e-16 Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 1/96 (1%) Frame = +2 Query: 158 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 334 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 335 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEM 442 +R+VLP +DHTI+KLLL++ EI+ K GR+L EM Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEM 98
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 60.5 bits (145), Expect = 2e-09 Identities = 30/90 (33%), Positives = 52/90 (57%) Frame = +2 Query: 173 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 352 C LV D A + +K LE + K+ AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 353 SEDHTIQKLLLLYLEIIDKRDAAGRVLPEM 442 S + ++KLL Y E+ K + G + EM Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQEM 92
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 51.2 bits (121), Expect = 1e-06 Identities = 26/72 (36%), Positives = 45/72 (62%) Frame = +2 Query: 227 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIID 406 KA +GSD K++ MK ++ +L G +P L + ++R+V+PS++ ++KLL Y EI+ Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 407 KRDAAGRVLPEM 442 K G++ EM Sbjct: 89 KLAEDGKLRHEM 100
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +2 Query: 131 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGET 310 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 311 LPTLFITVVRYVLPSED 361 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 29.6 bits (65), Expect = 3.5 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Frame = +2 Query: 194 DKG---SAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 364 DKG + + + + LE +D AA + +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 365 TIQKLLL--LYLEIIDKRDAAGR 427 T + +L L L++ D+ AG+ Sbjct: 272 TTSRAMLTSLGLKLGDRVVIAGQ 294
>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) (EF-2) Length = 536 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 233 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 364 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) Length = 535 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 233 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 364 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>POTE8_HUMAN (Q6S8J7) Prostate, ovary, testis expressed protein on chromosome 8| Length = 498 Score = 28.5 bits (62), Expect = 7.7 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = +2 Query: 161 MDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGE--TLPTLF-IT 331 +D+ C L V K A+ ++ + + A+MLL +G LP ++ T Sbjct: 119 LDRQCQLHVFDSKKRTALIKAVQCQED-----------ECALMLLQHGTDPNLPDMYGNT 167 Query: 332 VVRYVLPSEDHTIQKLLLLYLEIIDKRDAAG 424 + Y + +ED + K LLLY I+ ++ G Sbjct: 168 ALHYAVYNEDKLMAKTLLLYGADIESKNKGG 198 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,091,168 Number of Sequences: 219361 Number of extensions: 644271 Number of successful extensions: 2046 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2016 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2046 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
