>SF3B3_HUMAN (Q15393) Splicing factor 3B subunit 3 (Spliceosome-associated|
           protein 130) (SAP 130) (SF3b130) (Pre-mRNA splicing
           factor SF3b 130 kDa subunit) (STAF130)
          Length = 1217

 Score =  172 bits (435), Expect = 5e-43
 Identities = 86/131 (65%), Positives = 102/131 (77%)
 Frame = +2

Query: 74  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 253
           M+LY+LTLQRATG   A+ G+FSG          +  QEI V+RG  L+LLRPDP TG++
Sbjct: 1   MFLYNLTLQRATGISFAIHGNFSG----------TKQQEIVVSRGKILELLRPDPNTGKV 50

Query: 254 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 433
            TLL+V+VFG IRSL  FRLTG TKDY+VVGSDSGR+VILEY P +N F+K+HQETFGKS
Sbjct: 51  HTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKS 110

Query: 434 GCRRIVPGQLL 466
           GCRRIVPGQ L
Sbjct: 111 GCRRIVPGQFL 121

>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1|
          Length = 1221

 Score =  151 bits (382), Expect = 7e-37
 Identities = 78/131 (59%), Positives = 94/131 (71%)
 Frame = +2

Query: 74  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 253
           MYLY+LTLQ +      V+G FSG          +  QEI VA+G  L+LLRPD +TG++
Sbjct: 4   MYLYNLTLQASGSVNATVVGQFSG----------TRQQEIIVAKGSRLELLRPDTQTGKV 53

Query: 254 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 433
            T+LS D FG IRSLA FRLTG +KDY++VGSDSGR+VILEY P  N  +KVHQETFG+S
Sbjct: 54  DTVLSHDAFGVIRSLAAFRLTGGSKDYVIVGSDSGRIVILEYQPKTNSLEKVHQETFGRS 113

Query: 434 GCRRIVPGQLL 466
           G RRIVPGQ L
Sbjct: 114 GSRRIVPGQYL 124

>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1|
          Length = 1225

 Score =  138 bits (347), Expect = 8e-33
 Identities = 66/131 (50%), Positives = 90/131 (68%)
 Frame = +2

Query: 74  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 253
           M++YSLT+Q  T    A++G F          AG+  Q+I  A G  L + RPDP  G++
Sbjct: 7   MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKI 56

Query: 254 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 433
             + S DVFG IR+LA FRL G++KDY+++GSDSGR+ I+EY P +NRF+++H ETFGKS
Sbjct: 57  TPIYSQDVFGIIRTLAAFRLAGSSKDYIIIGSDSGRITIIEYVPSQNRFNRIHLETFGKS 116

Query: 434 GCRRIVPGQLL 466
           G RR+VPGQ L
Sbjct: 117 GVRRVVPGQYL 127

>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1|
          Length = 1226

 Score =  136 bits (342), Expect = 3e-32
 Identities = 66/131 (50%), Positives = 89/131 (67%)
 Frame = +2

Query: 74  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 253
           M++YSLT+Q  T    A++G F          AG+  Q+I  A G  L + RPDP  G++
Sbjct: 7   MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKV 56

Query: 254 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 433
             L + DVFG IR+LA FRL G+ KDY+++GSDSGR+ I+EY P +NRF+++H ETFGKS
Sbjct: 57  IPLYTQDVFGIIRTLAAFRLAGSNKDYIIIGSDSGRITIIEYVPSQNRFNRIHLETFGKS 116

Query: 434 GCRRIVPGQLL 466
           G RR+VPGQ L
Sbjct: 117 GVRRVVPGQYL 127

>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1|
          Length = 1271

 Score =  135 bits (340), Expect = 5e-32
 Identities = 64/131 (48%), Positives = 89/131 (67%)
 Frame = +2

Query: 74  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 253
           M+LYSLT+Q  T    A++G FSG          +  Q+I  A G  L LL+PDP  G++
Sbjct: 7   MFLYSLTIQPPTAVTQALLGQFSG----------TKEQQILTASGSRLTLLQPDPRQGKV 56

Query: 254 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 433
            TLLS D+FG +R++A FRL G+ KDY+++ +DSGR+ I+EY P  N+F ++H ETFGKS
Sbjct: 57  NTLLSHDIFGIVRAIASFRLAGSHKDYIILATDSGRITIIEYLPKTNKFQRIHLETFGKS 116

Query: 434 GCRRIVPGQLL 466
           G RR++PGQ L
Sbjct: 117 GVRRVIPGQYL 127

>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1|
          Length = 1229

 Score =  134 bits (336), Expect = 2e-31
 Identities = 67/131 (51%), Positives = 88/131 (67%)
 Frame = +2

Query: 74  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 253
           M+LYSL++Q  +    A++G FSG          +  Q+I  A G  L L RPDP  G++
Sbjct: 7   MFLYSLSIQPPSTITRAILGQFSG----------TKEQQIVAASGSRLTLYRPDPTQGKV 56

Query: 254 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 433
             L+S DVFG IR LA FRL G++KDYL++ SDSGR+ I+EY P +NRF ++H ETFGKS
Sbjct: 57  VPLMSHDVFGIIRDLASFRLAGSSKDYLIIASDSGRITIVEYLPAQNRFSRIHLETFGKS 116

Query: 434 GCRRIVPGQLL 466
           G RR+VPGQ L
Sbjct: 117 GVRRVVPGQYL 127

>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1|
          Length = 1217

 Score =  114 bits (285), Expect = 1e-25
 Identities = 67/134 (50%), Positives = 88/134 (65%), Gaps = 3/134 (2%)
 Frame = +2

Query: 74  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGT-LDLLRPDPETGR 250
           M+L +LTL   T    AV+GSFSG          S +QEI   RGGT L++ + +  TG+
Sbjct: 1   MHLLNLTLSSPTNVSTAVVGSFSG----------SKSQEILCVRGGTKLEIFKLNATTGQ 50

Query: 251 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY--SPDRNRFDKVHQETF 424
           L T++S + FG IR++A FRL G TKDY++  SDSGRL ILE+  SP  + F+ ++QE F
Sbjct: 51  LDTIVSTEAFGTIRNIAGFRLAGMTKDYILATSDSGRLSILEFVISPTPH-FESLYQEVF 109

Query: 425 GKSGCRRIVPGQLL 466
           GKSG RRIVPGQ L
Sbjct: 110 GKSGSRRIVPGQFL 123

>RSE1_SCHPO (Q9UTT2) Pre-mRNA-splicing factor rse1 (Pre-mRNA processing protein|
           12) (Spliceosome associated protein 130)
          Length = 1206

 Score =  107 bits (266), Expect = 2e-23
 Identities = 56/132 (42%), Positives = 83/132 (62%)
 Frame = +2

Query: 71  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 250
           +++LYSLT+Q +     +   S SG+ +          QEI +A    L + + D   GR
Sbjct: 6   SLFLYSLTIQNSNYVQSSCAASLSGKKA----------QEIVIATESRLLIYKVDATDGR 55

Query: 251 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGK 430
           +  +L+ + FG IR++A  RLTG  +DYLVV SDSGR+ ILEY+ ++N+   ++QETFGK
Sbjct: 56  MNCILNQNCFGIIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGK 115

Query: 431 SGCRRIVPGQLL 466
           SG RR+VPG+ L
Sbjct: 116 SGIRRVVPGEYL 127

>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1|
          Length = 1256

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 48/132 (36%), Positives = 80/132 (60%)
 Frame = +2

Query: 71  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 250
           ++YLY+LT++  +  + +++G F G  +KKS       QEI +A   +++L + D  TG+
Sbjct: 7   SLYLYNLTIKHPSLCIASIVGQFLG--NKKS-------QEIILANSTSIELWKADSNTGK 57

Query: 251 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGK 430
           L  +     FG I+ + + RL G  KDY+V+ SDSG+LV+LE+  ++ +F  + QE   K
Sbjct: 58  LEKIYQQASFGIIQGIDKIRLVGTQKDYVVITSDSGKLVVLEFDIEKLQFVPLFQEPHSK 117

Query: 431 SGCRRIVPGQLL 466
           +G RR  PG+ L
Sbjct: 118 NGLRRTSPGEYL 129

>RSE1_YARLI (Q6CAH5) Pre-mRNA-splicing factor RSE1|
          Length = 1143

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 44/129 (34%), Positives = 68/129 (52%)
 Frame = +2

Query: 80  LYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLRT 259
           LY  TL R++    A+ G FSG+  +    + +         G  L L   D +TG +  
Sbjct: 24  LYHSTL-RSSSPKSAICGRFSGKSQQVITLSST---------GNALYLYSHDGDTGTVTL 73

Query: 260 LLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKSGC 439
           + +      +R +  FRL G  KDY++  SDSG + +LE+    NRF  +H+E +G+SG 
Sbjct: 74  IHTHLTHCQVREIRAFRLPGLKKDYVIASSDSGVISVLEFR--HNRFVSLHKEAYGRSGI 131

Query: 440 RRIVPGQLL 466
           RR+VPG+ L
Sbjct: 132 RRVVPGEFL 140

>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1|
          Length = 1219

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 41/132 (31%), Positives = 68/132 (51%)
 Frame = +2

Query: 71  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 250
           ++YLY+LTL+  +  + +++G F  +D+   NA     Q++ +    TL L   + E G+
Sbjct: 39  SVYLYNLTLKPPSYYISSIVGQFYKQDNSTKNA-----QQLVLVSSTTLQLFEINEEAGK 93

Query: 251 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGK 430
           L    S ++ G I S+ +  L+    D +V+ SDSG L IL+Y     +F    QE   K
Sbjct: 94  LELQSSQNLLGIINSIEKICLSEV--DGVVITSDSGNLSILQYDNKTKKFISKIQEPMTK 151

Query: 431 SGCRRIVPGQLL 466
           +G  R   G+ L
Sbjct: 152 NGWGRNYVGENL 163

>RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1|
          Length = 1288

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
 Frame = +2

Query: 74  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQ------------EIAVARGGTL 217
           ++LY ++LQ+    V + IG F         A G S +            +I +A    +
Sbjct: 7   LHLYHVSLQKQRNYVHSCIGHFVDYRHHHIRAQGGSVEGGKKGSKWRKQLQICMATQTQV 66

Query: 218 DLLRPDPETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVIL--EYSPDR 391
           +L   D E GRLR L +  VFG I  L+     G  +  L+V  DSG++ +L  +Y   R
Sbjct: 67  ELY--DVEEGRLRRLFTRTVFGTITGLSSVVADG--RSVLIVVGDSGKMSVLRFKYEGGR 122

Query: 392 NRFDKVHQETFGKSGCRRIVP 454
            R + +  E   +SG RR+ P
Sbjct: 123 VRLEALFNEPLSRSGVRRLSP 143

>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding|
           protein 1b) (DDB1b)
          Length = 1088

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 26/103 (25%), Positives = 51/103 (49%)
 Frame = +2

Query: 71  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 250
           +++ Y++T Q+ T    + +G+F+         A S+  EI         LL P      
Sbjct: 2   SVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEI--------HLLSPQ----G 49

Query: 251 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY 379
           L+T+L V ++G I ++  FR  G  +D+L V ++  +  +L++
Sbjct: 50  LQTILDVPLYGRIATMELFRPHGEAQDFLFVATERYKFCVLQW 92

>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding|
           protein 1a) (DDB1a)
          Length = 1088

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 24/102 (23%), Positives = 46/102 (45%)
 Frame = +2

Query: 83  YSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLRTL 262
           Y +T  + T    + +G+F+         A  +  EI         LL P      L+ +
Sbjct: 6   YVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEI--------HLLTPQG----LQPM 53

Query: 263 LSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPD 388
           L V ++G I +L  FR  G  +D+L + ++  +  +L++ P+
Sbjct: 54  LDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDPE 95

>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding|
           protein 1) (High pigmentation protein 1)
          Length = 1090

 Score = 35.4 bits (80), Expect = 0.073
 Identities = 25/106 (23%), Positives = 49/106 (46%)
 Frame = +2

Query: 71  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 250
           +++ Y +T  + T    + +G+F+G        A  +  EI         LL P      
Sbjct: 2   SVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEI--------HLLTPQG---- 49

Query: 251 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPD 388
           L+ +L V ++G I +L  FR  G T+D L + ++  +  +L++  +
Sbjct: 50  LQPMLDVPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTE 95

>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (UV-damaged DNA-binding factor) (DDB p127
           subunit) (DDBa) (UV-damaged DNA-binding protein 1)
           (UV-DDB 1) (Xeroderma pigmentosum group E-complementing
           protein) (XPCe)
          Length = 1140

 Score = 35.4 bits (80), Expect = 0.073
 Identities = 31/109 (28%), Positives = 44/109 (40%)
 Frame = +2

Query: 77  YLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLR 256
           Y Y +T Q+ T     V G F+  +      A ++  EI V    T + LRP  E G   
Sbjct: 3   YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVV---TAEGLRPVKEVG--- 56

Query: 257 TLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFD 403
                 ++G I  +  FR  G +KD L + +      ILEY       D
Sbjct: 57  ------MYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESID 99

>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding|
           protein 1)
          Length = 1095

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 23/106 (21%), Positives = 48/106 (45%)
 Frame = +2

Query: 71  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 250
           +++ Y +T  + T    + +G+F+G        A  +  EI +     L  +   P    
Sbjct: 2   SVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQP---- 57

Query: 251 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPD 388
              +L V ++G I +L  FR  G T+D L + ++  +  +L++  +
Sbjct: 58  ---MLDVPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTE 100

>RSE1_CANGA (Q6FLQ6) Pre-mRNA-splicing factor RSE1|
          Length = 1296

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
 Frame = +2

Query: 74  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 253
           M LY LTLQR +  V +V GSF GRDS +   A  +  E+    G     +  D      
Sbjct: 1   MELYHLTLQRQSNYVHSVKGSFLGRDSNELVVATQTHIELYDFAGKVRRKVGND--IVLF 58

Query: 254 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY--SPDRNRFDKVHQETFG 427
            +LL++D       LA          +LV+   +G LV+ ++  S DR + D      F 
Sbjct: 59  TSLLALDTIWDEDGLA----------HLVMLGQNGNLVVAKFALSGDRLQLDSEFLYRFD 108

Query: 428 KS 433
            S
Sbjct: 109 NS 110

>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (DDB p127 subunit) (DDBa) (UV-damaged
           DNA-binding protein 1) (UV-DDB 1)
          Length = 1140

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 30/109 (27%), Positives = 43/109 (39%)
 Frame = +2

Query: 77  YLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLR 256
           Y Y +T Q+ T     V   F+  +      A ++  EI V    T + LRP  E G   
Sbjct: 3   YNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVV---TAEGLRPVKEVG--- 56

Query: 257 TLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFD 403
                 ++G I  +  FR  G +KD L + +      ILEY       D
Sbjct: 57  ------MYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESID 99

>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)|
          Length = 1669

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 116 VCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDP--ETGRLRTLLSVDVFGAI 289
           V A I  FS +  ++SN   ++  +I   + G +DL  PD    +  LR LL+   F  +
Sbjct: 177 VLASIPGFSVKPRRRSNKKLTTAAQIEQTKDGKIDLETPDSILASTNLRALLNKQTFSLL 236

Query: 290 RSLAQFRL 313
             L Q+ L
Sbjct: 237 PPLYQYNL 244

>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to|
           Golgi transport factor 1) (Spliceosome-associated
           protein 130)
          Length = 1361

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
 Frame = +2

Query: 74  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 253
           +YLY LTL++ T  V + IG F   +      AGS  ++  +       L   D   G L
Sbjct: 58  LYLYHLTLKKQTNFVHSCIGHFVDLE------AGSKREQSQLCVATETHLELYDTADGEL 111

Query: 254 RTLLSV-DVFGAIRSLAQFRLTGATK--------DYLVVGSDSGRLVILE 376
           + +    ++F  I S+    L  +           +L + SDSG L I++
Sbjct: 112 KLIAKFQNLFATITSMKSLDLPHSGSRAKASNWPTFLALTSDSGNLSIVQ 161

>DHTM_METME (P16099) Trimethylamine dehydrogenase (EC 1.5.8.2) (TMADh)|
          Length = 729

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +2

Query: 245 GRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLV--ILEYSPDRNRFDKVHQE 418
           G+   +L+ D +    SLA+   T   +  +V G      +   LEY     R  ++H E
Sbjct: 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVE 587

Query: 419 TFGKSGCRRIVPGQL 463
             G   C RI PG++
Sbjct: 588 ELGDHFCSRIEPGRM 602

>RPTOR_HUMAN (Q8N122) Regulatory associated protein of mTOR (Raptor) (P150|
           target of rapamycin (TOR)-scaffold protein)
          Length = 1335

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +2

Query: 194 AVARGGTLDLLRPDPETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLV 367
           A   GG+L  +R  P T RLR   SV  +G IR++A  R    +   L +  +SG  V
Sbjct: 698 ATTEGGSLTPVRDSPCTPRLR---SVSSYGNIRAVATARSLNKSLQNLSLTEESGGAV 752

>NFIP2_MOUSE (Q91ZP6) NEDD4 family-interacting protein 2 (NEDD4 WW|
           domain-binding protein 5A) (Fragment)
          Length = 311

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +2

Query: 104 ATGAVCAVIGSFSGRD-----SKKSNAAGSSTQEIAVA-RGGTLDLLRPDPETGRL 253
           ATG+  A  G   GR         + AA +ST+E   A R G     +PDPE GR+
Sbjct: 16  ATGSEAAPPGDLGGRTRGGGRGSAAAAATTSTREAEGAERRGDTPARKPDPEAGRM 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.306    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,378,227
Number of Sequences: 219361
Number of extensions: 470369
Number of successful extensions: 1166
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)