ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl05b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome... 323 3e-85
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 323 3e-85
3dbj|AK065625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 3e-85
4dbj|AB011270.1| Oryza sativa (japonica cultivar-group) mRNA for ... 323 3e-85
5emb|Y15226.1|OSIMPB2 Oryza sativa mRNA for importin beta-like pr... 307 2e-80
6gb|BC078692.1| Rattus norvegicus testis-specific gene including ... 46 0.099
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.099
8ref|XM_975780.1| PREDICTED: Mus musculus AN1, ubiquitin-like, ho... 46 0.099
9ref|XM_892874.2| PREDICTED: Mus musculus AN1, ubiquitin-like, ho... 46 0.099
10ref|XM_917486.2| PREDICTED: Mus musculus AN1, ubiquitin-like, ho... 46 0.099
11gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.099
12dbj|AK089032.1| Mus musculus 2 days neonate thymus thymic cells ... 46 0.099
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.099
14gb|BC048508.1| Mus musculus AN1, ubiquitin-like, homolog (Xenopu... 46 0.099
15gb|AC147612.5| Mus musculus BAC clone RP23-374K9 from 6, complet... 46 0.099
16gb|AC159648.2| Mus musculus BAC clone RP23-38A15 from chromosome... 44 0.39
17gb|AC159645.2| Mus musculus BAC clone RP23-242E11 from chromosom... 44 0.39
18gb|AC010871.7|ATAC010871 Arabidopsis thaliana chromosome III BAC... 42 1.5
19emb|AL513487.3| Human DNA sequence from clone RP13-63I15 on chro... 42 1.5
20emb|BX824687.1|CNS0A7D7 Arabidopsis thaliana Full-length cDNA Co... 42 1.5
21gb|AF020583.1|AF020583 Zamia furfuracea cytochrome c oxidase (co... 42 1.5
22gb|AF020577.1|AF020577 Stangeria eriopus cytochrome c oxidase (c... 42 1.5
23gb|AF020563.1|AF020563 Encephalartos lebomboensis cytochrome c o... 42 1.5
24gb|AF020562.1|AF020562 Cycas revoluta cytochrome c oxidase (coxI... 42 1.5
25gb|AC120144.11| Mus musculus chromosome 8, clone RP24-427K8, com... 40 6.1
26gb|BC061828.1| Rattus norvegicus cDNA clone IMAGE:5599715, parti... 40 6.1
27gb|AC158615.6| Mus musculus 10 BAC RP23-256B24 (Roswell Park Can... 40 6.1
28emb|BX070094.1|CNS09Q8Y Single read from an extremity of a full-... 40 6.1
29emb|BX066998.1|CNS09NUY Single read from an extremity of a full-... 40 6.1
30emb|BX063629.1|CNS09L9D Single read from an extremity of a full-... 40 6.1
31emb|BX034964.1|CNS08Z54 Single read from an extremity of a full-... 40 6.1
32emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
33gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 geno... 40 6.1
34gb|AC022446.6| Homo sapiens chromosome 5 clone RP11-5H13, comple... 40 6.1
35gb|AC159329.8| Mus musculus 10 BAC RP23-205H9 (Roswell Park Canc... 40 6.1
36dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
37dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
39gb|AC010478.5|AC010478 Homo sapiens chromosome 5 clone CTD-2314G... 40 6.1
40gb|AC150476.3| Dasypus novemcinctus clone VMRC5-421E14, complete... 40 6.1
41dbj|AP004613.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
42dbj|AK120472.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
43dbj|AK105982.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
44dbj|AK101036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
45dbj|AK071890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
46emb|AL139353.3|CNS01DXJ Human chromosome 14 DNA sequence BAC R-1... 40 6.1
47emb|AL772179.17| Mouse DNA sequence from clone RP23-100B18 on ch... 40 6.1
48gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
49emb|AL672148.8| Mouse DNA sequence from clone RP23-369O15 on chr... 40 6.1
50emb|AL845172.3| Mouse DNA sequence from clone RP23-285J17 on chr... 40 6.1
51gb|AC091860.3| Homo sapiens chromosome 5 clone CTD-2335O3, compl... 40 6.1
52gb|M55173.1|DROZZDA D.hydrei Z-DNA flanking regions 40 6.1 
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10,
             complete sequence
          Length = 134183

 Score =  323 bits (163), Expect = 3e-85
 Identities = 331/387 (85%)
 Strand = Plus / Plus

                                                                         
Query: 68    acagtcatggatatcactcagattctgctagctgctcagtctccagatggtaaccttcgc 127
             |||| |||| |||||||||| || |||||| | ||||| ||| |||||||||||||||| 
Sbjct: 61880 acagccatgaatatcactcaaatcctgctatcagctcaatctgcagatggtaaccttcgg 61939

                                                                         
Query: 128   tcagcagcagaagccaacatcaagcagttccaggagcagaatcttcccaacttcctccta 187
               || ||||||||  ||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct: 61940 gtagtagcagaagggaacctcaagcagttccaggagcagaatcttcccaacttccttctc 61999

                                                                         
Query: 188   tccttgtcggtggagttatcgaatgatgaaaggccaccagagtctagaagacttgctggt 247
             |||||||| |||||  | ||| || ||||||  ||||||||||||||| |||||||||||
Sbjct: 62000 tccttgtcagtggaactttcggataatgaaaaaccaccagagtctagacgacttgctggt 62059

                                                                         
Query: 248   attatccttaagaattcactggacgcaaaagattctgcaaggaaggagctgctgattcag 307
             |||||||||||||| ||  |||| ||||| ||||||||||  ||||| || |||||||||
Sbjct: 62060 attatccttaagaactccttggatgcaaaggattctgcaaaaaaggaactactgattcag 62119

                                                                         
Query: 308   caatgggtcagcttggatcactcgatcaaatcgcagattaaggagtcattgctgataaca 367
             |||||||||||| ||||||  || ||||||  | |||| |||||||| ||||||||||| 
Sbjct: 62120 caatgggtcagcctggatccatcaatcaaacagaagataaaggagtccttgctgataacg 62179

                                                                         
Query: 368   ctaggatcttcggtgggtgatgcccggcagacgtcatcacaagtcattgcaaagattgca 427
             |||||||||||||||  ||||||  |||| || ||||||||||||||||| ||| |||||
Sbjct: 62180 ctaggatcttcggtgcatgatgctaggcatacctcatcacaagtcattgccaaggttgca 62239

                                        
Query: 428   tccattgagataccccgtcgggaatgg 454
             ||||||||||| ||||| || ||||||
Sbjct: 62240 tccattgagatcccccggcgtgaatgg 62266
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  323 bits (163), Expect = 3e-85
 Identities = 331/387 (85%)
 Strand = Plus / Plus

                                                                            
Query: 68       acagtcatggatatcactcagattctgctagctgctcagtctccagatggtaaccttcgc 127
                |||| |||| |||||||||| || |||||| | ||||| ||| |||||||||||||||| 
Sbjct: 16563141 acagccatgaatatcactcaaatcctgctatcagctcaatctgcagatggtaaccttcgg 16563200

                                                                            
Query: 128      tcagcagcagaagccaacatcaagcagttccaggagcagaatcttcccaacttcctccta 187
                  || ||||||||  ||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct: 16563201 gtagtagcagaagggaacctcaagcagttccaggagcagaatcttcccaacttccttctc 16563260

                                                                            
Query: 188      tccttgtcggtggagttatcgaatgatgaaaggccaccagagtctagaagacttgctggt 247
                |||||||| |||||  | ||| || ||||||  ||||||||||||||| |||||||||||
Sbjct: 16563261 tccttgtcagtggaactttcggataatgaaaaaccaccagagtctagacgacttgctggt 16563320

                                                                            
Query: 248      attatccttaagaattcactggacgcaaaagattctgcaaggaaggagctgctgattcag 307
                |||||||||||||| ||  |||| ||||| ||||||||||  ||||| || |||||||||
Sbjct: 16563321 attatccttaagaactccttggatgcaaaggattctgcaaaaaaggaactactgattcag 16563380

                                                                            
Query: 308      caatgggtcagcttggatcactcgatcaaatcgcagattaaggagtcattgctgataaca 367
                |||||||||||| ||||||  || ||||||  | |||| |||||||| ||||||||||| 
Sbjct: 16563381 caatgggtcagcctggatccatcaatcaaacagaagataaaggagtccttgctgataacg 16563440

                                                                            
Query: 368      ctaggatcttcggtgggtgatgcccggcagacgtcatcacaagtcattgcaaagattgca 427
                |||||||||||||||  ||||||  |||| || ||||||||||||||||| ||| |||||
Sbjct: 16563441 ctaggatcttcggtgcatgatgctaggcatacctcatcacaagtcattgccaaggttgca 16563500

                                           
Query: 428      tccattgagataccccgtcgggaatgg 454
                ||||||||||| ||||| || ||||||
Sbjct: 16563501 tccattgagatcccccggcgtgaatgg 16563527
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>dbj|AK065625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029L11, full
           insert sequence
          Length = 3150

 Score =  323 bits (163), Expect = 3e-85
 Identities = 331/387 (85%)
 Strand = Plus / Plus

                                                                       
Query: 68  acagtcatggatatcactcagattctgctagctgctcagtctccagatggtaaccttcgc 127
           |||| |||| |||||||||| || |||||| | ||||| ||| |||||||||||||||| 
Sbjct: 288 acagccatgaatatcactcaaatcctgctatcagctcaatctgcagatggtaaccttcgg 347

                                                                       
Query: 128 tcagcagcagaagccaacatcaagcagttccaggagcagaatcttcccaacttcctccta 187
             || ||||||||  ||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct: 348 gtagtagcagaagggaacctcaagcagttccaggagcagaatcttcccaacttccttctc 407

                                                                       
Query: 188 tccttgtcggtggagttatcgaatgatgaaaggccaccagagtctagaagacttgctggt 247
           |||||||| |||||  | ||| || ||||||  ||||||||||||||| |||||||||||
Sbjct: 408 tccttgtcagtggaactttcggataatgaaaaaccaccagagtctagacgacttgctggt 467

                                                                       
Query: 248 attatccttaagaattcactggacgcaaaagattctgcaaggaaggagctgctgattcag 307
           |||||||||||||| ||  |||| ||||| ||||||||||  ||||| || |||||||||
Sbjct: 468 attatccttaagaactccttggatgcaaaggattctgcaaaaaaggaactactgattcag 527

                                                                       
Query: 308 caatgggtcagcttggatcactcgatcaaatcgcagattaaggagtcattgctgataaca 367
           |||||||||||| ||||||  || ||||||  | |||| |||||||| ||||||||||| 
Sbjct: 528 caatgggtcagcctggatccatcaatcaaacagaagataaaggagtccttgctgataacg 587

                                                                       
Query: 368 ctaggatcttcggtgggtgatgcccggcagacgtcatcacaagtcattgcaaagattgca 427
           |||||||||||||||  ||||||  |||| || ||||||||||||||||| ||| |||||
Sbjct: 588 ctaggatcttcggtgcatgatgctaggcatacctcatcacaagtcattgccaaggttgca 647

                                      
Query: 428 tccattgagataccccgtcgggaatgg 454
           ||||||||||| ||||| || ||||||
Sbjct: 648 tccattgagatcccccggcgtgaatgg 674
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>dbj|AB011270.1| Oryza sativa (japonica cultivar-group) mRNA for importin-beta1,
           complete cds
          Length = 3115

 Score =  323 bits (163), Expect = 3e-85
 Identities = 331/387 (85%)
 Strand = Plus / Plus

                                                                       
Query: 68  acagtcatggatatcactcagattctgctagctgctcagtctccagatggtaaccttcgc 127
           |||| |||| |||||||||| || |||||| | ||||| ||| |||||||||||||||| 
Sbjct: 248 acagccatgaatatcactcaaatcctgctatcagctcaatctgcagatggtaaccttcgg 307

                                                                       
Query: 128 tcagcagcagaagccaacatcaagcagttccaggagcagaatcttcccaacttcctccta 187
             || ||||||||  ||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct: 308 gtagtagcagaagggaacctcaagcagttccaggagcagaatcttcccaacttccttctc 367

                                                                       
Query: 188 tccttgtcggtggagttatcgaatgatgaaaggccaccagagtctagaagacttgctggt 247
           |||||||| |||||  | ||| || ||||||  ||||||||||||||| |||||||||||
Sbjct: 368 tccttgtcagtggaactttcggataatgaaaaaccaccagagtctagacgacttgctggt 427

                                                                       
Query: 248 attatccttaagaattcactggacgcaaaagattctgcaaggaaggagctgctgattcag 307
           |||||||||||||| ||  |||| ||||| ||||||||||  ||||| || |||||||||
Sbjct: 428 attatccttaagaactccttggatgcaaaggattctgcaaaaaaggaactactgattcag 487

                                                                       
Query: 308 caatgggtcagcttggatcactcgatcaaatcgcagattaaggagtcattgctgataaca 367
           |||||||||||| ||||||  || ||||||  | |||| |||||||| ||||||||||| 
Sbjct: 488 caatgggtcagcctggatccatcaatcaaacagaagataaaggagtccttgctgataacg 547

                                                                       
Query: 368 ctaggatcttcggtgggtgatgcccggcagacgtcatcacaagtcattgcaaagattgca 427
           |||||||||||||||  ||||||  |||| || ||||||||||||||||| ||| |||||
Sbjct: 548 ctaggatcttcggtgcatgatgctaggcatacctcatcacaagtcattgccaaggttgca 607

                                      
Query: 428 tccattgagataccccgtcgggaatgg 454
           ||||||||||| ||||| || ||||||
Sbjct: 608 tccattgagatcccccggcgtgaatgg 634
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>emb|Y15226.1|OSIMPB2 Oryza sativa mRNA for importin beta-like protein Imb2
          Length = 2838

 Score =  307 bits (155), Expect = 2e-80
 Identities = 311/363 (85%)
 Strand = Plus / Plus

                                                                       
Query: 92  ctgctagctgctcagtctccagatggtaaccttcgctcagcagcagaagccaacatcaag 151
           |||||| | ||||| ||| ||||||||||||||||   || ||||||||  ||| |||||
Sbjct: 8   ctgctatcagctcaatctgcagatggtaaccttcgggtagtagcagaagggaacctcaag 67

                                                                       
Query: 152 cagttccaggagcagaatcttcccaacttcctcctatccttgtcggtggagttatcgaat 211
           |||||||||||||||||||||||||||||||| || |||||||| |||||  | ||| ||
Sbjct: 68  cagttccaggagcagaatcttcccaacttccttctctccttgtcagtggaactttcggat 127

                                                                       
Query: 212 gatgaaaggccaccagagtctagaagacttgctggtattatccttaagaattcactggac 271
            ||||||  ||||||||||||||| ||||||||||||||||||||||||| ||  |||| 
Sbjct: 128 aatgaaaaaccaccagagtctagacgacttgctggtattatccttaagaactccttggat 187

                                                                       
Query: 272 gcaaaagattctgcaaggaaggagctgctgattcagcaatgggtcagcttggatcactcg 331
           ||||| ||||||||||  ||||| || ||||||||||||||||||||| ||||||  || 
Sbjct: 188 gcaaaggattctgcaaaaaaggaactactgattcagcaatgggtcagcctggatccatca 247

                                                                       
Query: 332 atcaaatcgcagattaaggagtcattgctgataacactaggatcttcggtgggtgatgcc 391
           ||||||  | |||| |||||||| ||||||||||| |||||||||||||||  |||||| 
Sbjct: 248 atcaaacagaagataaaggagtccttgctgataacgctaggatcttcggtgcatgatgct 307

                                                                       
Query: 392 cggcagacgtcatcacaagtcattgcaaagattgcatccattgagataccccgtcgggaa 451
            |||| || ||||||||||||||||| ||| |||||||||||||||| ||||| || |||
Sbjct: 308 aggcatacctcatcacaagtcattgccaaggttgcatccattgagatcccccggcgtgaa 367

              
Query: 452 tgg 454
           |||
Sbjct: 368 tgg 370
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>gb|BC078692.1| Rattus norvegicus testis-specific gene including a
          ubiquitin-likely domain, mRNA (cDNA clone MGC:93072
          IMAGE:7112281), complete cds
          Length = 1026

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 3  gcgggcaggcgagcgagcgagcg 25
          |||||||||||||||||||||||
Sbjct: 62 gcgggcaggcgagcgagcgagcg 84
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 74       atggatatcactcagattctgctagctgctcagtc 108
                ||||||||||| ||| ||||||||||||| |||||
Sbjct: 10255004 atggatatcacacaggttctgctagctgcgcagtc 10254970



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 234      gaagacttgctggtattatccttaagaattcactggacgcaaaaga 279
                |||| |||||||||||| | |||||||||||  |||| ||||||||
Sbjct: 10254844 gaaggcttgctggtattttgcttaagaattccttggatgcaaaaga 10254799
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>ref|XM_975780.1| PREDICTED: Mus musculus AN1, ubiquitin-like, homolog (Xenopus
          laevis) (Anubl1), mRNA
          Length = 2536

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 3  gcgggcaggcgagcgagcgagcg 25
          |||||||||||||||||||||||
Sbjct: 27 gcgggcaggcgagcgagcgagcg 49
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>ref|XM_892874.2| PREDICTED: Mus musculus AN1, ubiquitin-like, homolog (Xenopus
          laevis), transcript variant 2 (Anubl1), mRNA
          Length = 2536

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 3  gcgggcaggcgagcgagcgagcg 25
          |||||||||||||||||||||||
Sbjct: 27 gcgggcaggcgagcgagcgagcg 49
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>ref|XM_917486.2| PREDICTED: Mus musculus AN1, ubiquitin-like, homolog (Xenopus
          laevis), transcript variant 7 (Anubl1), mRNA
          Length = 2536

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 3  gcgggcaggcgagcgagcgagcg 25
          |||||||||||||||||||||||
Sbjct: 27 gcgggcaggcgagcgagcgagcg 49
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>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0045E22, from chromosome 3, complete sequence
          Length = 160920

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 74     atggatatcactcagattctgctagctgctcagtc 108
              ||||||||||| ||| ||||||||||||| |||||
Sbjct: 116417 atggatatcacacaggttctgctagctgcgcagtc 116383



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 234    gaagacttgctggtattatccttaagaattcactggacgcaaaaga 279
              |||| |||||||||||| | |||||||||||  |||| ||||||||
Sbjct: 116257 gaaggcttgctggtattttgcttaagaattccttggatgcaaaaga 116212
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>dbj|AK089032.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
          full-length enriched library, clone:E430036P15
          product:RSD-7 homolog [Rattus norvegicus], full insert
          sequence
          Length = 3087

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 3  gcgggcaggcgagcgagcgagcg 25
          |||||||||||||||||||||||
Sbjct: 41 gcgggcaggcgagcgagcgagcg 63
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 74       atggatatcactcagattctgctagctgctcagtc 108
                ||||||||||| ||| ||||||||||||| |||||
Sbjct: 10253105 atggatatcacacaggttctgctagctgcgcagtc 10253071



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 234      gaagacttgctggtattatccttaagaattcactggacgcaaaaga 279
                |||| |||||||||||| | |||||||||||  |||| ||||||||
Sbjct: 10252945 gaaggcttgctggtattttgcttaagaattccttggatgcaaaaga 10252900
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>gb|BC048508.1| Mus musculus AN1, ubiquitin-like, homolog (Xenopus laevis), mRNA
          (cDNA clone IMAGE:6774262), complete cds
          Length = 905

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 3  gcgggcaggcgagcgagcgagcg 25
          |||||||||||||||||||||||
Sbjct: 1  gcgggcaggcgagcgagcgagcg 23
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>gb|AC147612.5| Mus musculus BAC clone RP23-374K9 from 6, complete sequence
          Length = 190156

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 3     gcgggcaggcgagcgagcgagcg 25
             |||||||||||||||||||||||
Sbjct: 55541 gcgggcaggcgagcgagcgagcg 55519
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>gb|AC159648.2| Mus musculus BAC clone RP23-38A15 from chromosome 12, complete sequence
          Length = 156190

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 3     gcgggcaggcgagcgagcgagc 24
             ||||||||||||||||||||||
Sbjct: 85052 gcgggcaggcgagcgagcgagc 85031
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>gb|AC159645.2| Mus musculus BAC clone RP23-242E11 from chromosome 12, complete sequence
          Length = 220771

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 3      gcgggcaggcgagcgagcgagc 24
              ||||||||||||||||||||||
Sbjct: 190959 gcgggcaggcgagcgagcgagc 190938
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>gb|AC010871.7|ATAC010871 Arabidopsis thaliana chromosome III BAC T16O11 genomic sequence,
             complete sequence
          Length = 80381

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 257   aagaattcactggacgcaaaagattctgc 285
             |||||||| |||||||| |||||||||||
Sbjct: 34823 aagaattctctggacgccaaagattctgc 34851



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 257   aagaattcactggacgcaaaagattctgc 285
             |||||||| |||||||| |||||||||||
Sbjct: 32349 aagaattctctggacgccaaagattctgc 32321
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>emb|AL513487.3| Human DNA sequence from clone RP13-63I15 on chromosome Xq24-26.2,
             complete sequence
          Length = 144177

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 405   cacaagtcattgcaaagattgcatc 429
             |||||||||| ||||||||||||||
Sbjct: 13183 cacaagtcatagcaaagattgcatc 13159
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>emb|BX824687.1|CNS0A7D7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH64ZE06 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2944

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 257 aagaattcactggacgcaaaagattctgc 285
           |||||||| |||||||| |||||||||||
Sbjct: 352 aagaattctctggacgccaaagattctgc 380
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>gb|AF020583.1|AF020583 Zamia furfuracea cytochrome c oxidase (coxI) gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 1415

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 291 aggagctgctgattcagcaat 311
           |||||||||||||||||||||
Sbjct: 326 aggagctgctgattcagcaat 346
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>gb|AF020577.1|AF020577 Stangeria eriopus cytochrome c oxidase (coxI) gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 1415

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 291 aggagctgctgattcagcaat 311
           |||||||||||||||||||||
Sbjct: 326 aggagctgctgattcagcaat 346
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>gb|AF020563.1|AF020563 Encephalartos lebomboensis cytochrome c oxidase (coxI) gene,
           mitochondrial gene encoding mitochondrial protein,
           partial cds
          Length = 1415

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 291 aggagctgctgattcagcaat 311
           |||||||||||||||||||||
Sbjct: 326 aggagctgctgattcagcaat 346
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>gb|AF020562.1|AF020562 Cycas revoluta cytochrome c oxidase (coxI) gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 1415

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 291 aggagctgctgattcagcaat 311
           |||||||||||||||||||||
Sbjct: 326 aggagctgctgattcagcaat 346
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>gb|AC120144.11| Mus musculus chromosome 8, clone RP24-427K8, complete sequence
          Length = 210003

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aggcgggcaggcgagcgagc 20
             ||||||||||||||||||||
Sbjct: 82017 aggcgggcaggcgagcgagc 81998
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>gb|BC061828.1| Rattus norvegicus cDNA clone IMAGE:5599715, partial cds
          Length = 3356

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  gcagaatcttcccaacttcc 182
            ||||||||||||||||||||
Sbjct: 1730 gcagaatcttcccaacttcc 1749
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>gb|AC158615.6| Mus musculus 10 BAC RP23-256B24 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 217393

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 162   agcagaatcttcccaacttcctcctatccttg 193
             |||| ||||||||||| ||| |||||||||||
Sbjct: 18245 agcacaatcttcccaagttcatcctatccttg 18276
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>emb|BX070094.1|CNS09Q8Y Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC7AA12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 684

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 140 gccaacatcaagcagttcca 159
           ||||||||||||||||||||
Sbjct: 432 gccaacatcaagcagttcca 451
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>emb|BX066998.1|CNS09NUY Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC50CA07 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 869

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 140 gccaacatcaagcagttcca 159
           ||||||||||||||||||||
Sbjct: 447 gccaacatcaagcagttcca 466
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>emb|BX063629.1|CNS09L9D Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC45CC12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 552

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 140 gccaacatcaagcagttcca 159
           ||||||||||||||||||||
Sbjct: 442 gccaacatcaagcagttcca 461
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>emb|BX034964.1|CNS08Z54 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA6AD09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 712

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 140 gccaacatcaagcagttcca 159
           ||||||||||||||||||||
Sbjct: 430 gccaacatcaagcagttcca 449
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>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19,
              complete sequence
          Length = 123272

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    aaagattctgcaaggaagga 294
              ||||||||||||||||||||
Sbjct: 103916 aaagattctgcaaggaagga 103897
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>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete
              sequence
          Length = 194361

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      ggcaggcgagcgagcgagcg 25
              ||||||||||||||||||||
Sbjct: 142120 ggcaggcgagcgagcgagcg 142139
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>gb|AC022446.6| Homo sapiens chromosome 5 clone RP11-5H13, complete sequence
          Length = 188534

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   tccttaagaattcactggac 271
             ||||||||||||||||||||
Sbjct: 64567 tccttaagaattcactggac 64586
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>gb|AC159329.8| Mus musculus 10 BAC RP23-205H9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 213287

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 162    agcagaatcttcccaacttcctcctatccttg 193
              |||| ||||||||||| ||| |||||||||||
Sbjct: 188251 agcacaatcttcccaagttcatcctatccttg 188282
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 275      aaagattctgcaaggaagga 294
                ||||||||||||||||||||
Sbjct: 35479113 aaagattctgcaaggaagga 35479094
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 6        ggcaggcgagcgagcgagcg 25
                ||||||||||||||||||||
Sbjct: 20264385 ggcaggcgagcgagcgagcg 20264404
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 8        caggcgagcgagcgagcgcg 27
                ||||||||||||||||||||
Sbjct: 16440780 caggcgagcgagcgagcgcg 16440799
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>gb|AC010478.5|AC010478 Homo sapiens chromosome 5 clone CTD-2314G24, complete sequence
          Length = 126852

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      ggcgggcaggcgagcgagcgagcg 25
              |||||||| |||||||||||||||
Sbjct: 106614 ggcgggcaagcgagcgagcgagcg 106637
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>gb|AC150476.3| Dasypus novemcinctus clone VMRC5-421E14, complete sequence
          Length = 68689

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   cagagtctagaagacttgct 244
             ||||||||||||||||||||
Sbjct: 26460 cagagtctagaagacttgct 26479
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>dbj|AP004613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1123_G09
          Length = 107491

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     caggcgagcgagcgagcgcg 27
             ||||||||||||||||||||
Sbjct: 48377 caggcgagcgagcgagcgcg 48396
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>dbj|AK120472.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110J07,
          full insert sequence
          Length = 2011

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 6  ggcaggcgagcgagcgagcg 25
          ||||||||||||||||||||
Sbjct: 35 ggcaggcgagcgagcgagcg 16
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>dbj|AK105982.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G02, full
           insert sequence
          Length = 1113

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 275 aaagattctgcaaggaagga 294
           ||||||||||||||||||||
Sbjct: 64  aaagattctgcaaggaagga 45
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>dbj|AK101036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033000D16,
          full insert sequence
          Length = 1723

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 6  ggcaggcgagcgagcgagcg 25
          ||||||||||||||||||||
Sbjct: 36 ggcaggcgagcgagcgagcg 17
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>dbj|AK071890.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N15,
          full insert sequence
          Length = 1874

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 6  ggcaggcgagcgagcgagcg 25
          ||||||||||||||||||||
Sbjct: 33 ggcaggcgagcgagcgagcg 14
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>emb|AL139353.3|CNS01DXJ Human chromosome 14 DNA sequence BAC R-176H8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170919

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   tcgcagattaaggagtcatt 357
             ||||||||||||||||||||
Sbjct: 51487 tcgcagattaaggagtcatt 51506
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>emb|AL772179.17| Mouse DNA sequence from clone RP23-100B18 on chromosome 2, complete
             sequence
          Length = 194065

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    tgctagctgctcagtctcca 112
             ||||||||||||||||||||
Sbjct: 50998 tgctagctgctcagtctcca 50979
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 6        ggcaggcgagcgagcgagcg 25
                ||||||||||||||||||||
Sbjct: 20275661 ggcaggcgagcgagcgagcg 20275680
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>emb|AL672148.8| Mouse DNA sequence from clone RP23-369O15 on chromosome X, complete
              sequence
          Length = 130107

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 249    ttatccttaagaattcactggacgcaaa 276
              |||||| ||||||||||||||| |||||
Sbjct: 128123 ttatccataagaattcactggaagcaaa 128096
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>emb|AL845172.3| Mouse DNA sequence from clone RP23-285J17 on chromosome 2, complete
              sequence
          Length = 185138

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 162    agcagaatcttcccaacttcctcc 185
              ||||||| ||||||||||||||||
Sbjct: 133581 agcagaaacttcccaacttcctcc 133604
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>gb|AC091860.3| Homo sapiens chromosome 5 clone CTD-2335O3, complete sequence
          Length = 100348

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     ggcgggcaggcgagcgagcgagcg 25
             |||||||| |||||||||||||||
Sbjct: 85790 ggcgggcaagcgagcgagcgagcg 85767
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>gb|M55173.1|DROZZDA D.hydrei Z-DNA flanking regions
          Length = 1516

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   caggcgagcgagcgagcgcg 27
           ||||||||||||||||||||
Sbjct: 370 caggcgagcgagcgagcgcg 351


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,458,822
Number of Sequences: 3902068
Number of extensions: 3458822
Number of successful extensions: 69840
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69621
Number of HSP's gapped (non-prelim): 219
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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