ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05a07 |
|---|---|
| Clone Library Name | barley_pub |
>RHSD_ECOLI (P16919) Protein rhsD precursor| Length = 1426 Score = 33.9 bits (76), Expect = 0.24 Identities = 22/88 (25%), Positives = 35/88 (39%) Frame = +1 Query: 115 DNVSVLFDDGSVRKVSRADPMRLRLASGPMHPDTACPFYPGQRVKAVSSSVYKTSRWLHG 294 ++V L D +R DP RL +HPD+ +P R+ + VY+ + Sbjct: 897 ESVRTLAPDLDIRIPYATDPAGNRLPDPELHPDSTLTVWPDNRIAEDAHYVYRHDEYGRL 956 Query: 295 MWKASRLEATVTKVETAAVIVYWIASAH 378 K R+ A V + + Y S H Sbjct: 957 TEKTDRIPAGVIRTDDERTHHYHYDSQH 984
>RHSE_ECOLI (P24211) Protein rhsE| Length = 682 Score = 33.9 bits (76), Expect = 0.24 Identities = 22/88 (25%), Positives = 35/88 (39%) Frame = +1 Query: 115 DNVSVLFDDGSVRKVSRADPMRLRLASGPMHPDTACPFYPGQRVKAVSSSVYKTSRWLHG 294 ++V L D +R DP RL +HPD+ +P R+ + VY+ + Sbjct: 172 ESVRTLAPDLDIRIPYATDPAGNRLPDPELHPDSTLTVWPDNRIAEDAHYVYRHDEYGRL 231 Query: 295 MWKASRLEATVTKVETAAVIVYWIASAH 378 K R+ A V + + Y S H Sbjct: 232 TEKTDRIPAGVIRTDDERTHHYHYDSQH 259
>TXMG2_MACGS (P83558) Neurotoxin magi-2 precursor| Length = 121 Score = 33.9 bits (76), Expect = 0.24 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = +3 Query: 324 CNKGGNCCCHSLLDCVCT---LWYKSRFCSP 407 CN+ CC H L+CV T WYK ++C P Sbjct: 88 CNENLPCCKHRKLECVETSGYWWYKRKYCRP 118
>ZYX_MOUSE (Q62523) Zyxin| Length = 564 Score = 33.1 bits (74), Expect = 0.42 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = +1 Query: 100 VDEVFDNVSVLFDDGSVRKVSRADPMRLRLASGPMHPDTACPFYPGQRVKAVSSSVYKTS 279 +D D++S L DD +++ DP + R++SG + P A PF P K Sbjct: 145 IDLEIDSLSSLLDD-----MTKNDPFKARVSSGYVPPPVATPFVPKPSTKPAPGGTAPLP 199 Query: 280 RW 285 W Sbjct: 200 PW 201
>ZYX_HUMAN (Q15942) Zyxin (Zyxin-2)| Length = 572 Score = 30.8 bits (68), Expect = 2.1 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +1 Query: 100 VDEVFDNVSVLFDDGSVRKVSRADPMRLRLASGPMHPDTACPFYPGQRVKAVSSSVYKTS 279 +D D++S L DD +++ DP + R++SG + P A PF K + Sbjct: 144 IDLEIDSLSSLLDD-----MTKNDPFKARVSSGYVPPPVATPFSSKSSTKPAAGGTAPLP 198 Query: 280 RW 285 W Sbjct: 199 PW 200
>PACE1_HUMAN (Q8IZE3) Protein-associating with the carboxyl-terminal domain of| ezrin (Ezrin-binding protein PACE-1) (SCY1-like protein 3) Length = 741 Score = 30.8 bits (68), Expect = 2.1 Identities = 20/56 (35%), Positives = 28/56 (50%) Frame = +1 Query: 292 GMWKASRLEATVTKVETAAVIVYWIASAHCGTNQDSVPPEEQNPKDLTLLSCFSYA 459 G WK +E TV KV A ++ S + S+PPEE +P+ TL C +A Sbjct: 135 GHWKLGGME-TVCKVSQATP--EFLRSIQSIRDPASIPPEEMSPEFTTLPECHGHA 187
>TRPG_HALSA (Q9HPG6) Anthranilate synthase component II (EC 4.1.3.27)| (Glutamine amido-transferase) Length = 198 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +1 Query: 103 DEVFDNVSVLFDDGSVRKVSRADPMRLRLASGPMHPDT 216 D+ +V+VL + S+ V ADP + ++ GP HPDT Sbjct: 26 DDHAPDVTVLKNTASLAAVRAADPDAVVISPGPGHPDT 63
>MT_PLEAT (Q6XUW5) Metallothionein (MT)| Length = 61 Score = 30.4 bits (67), Expect = 2.7 Identities = 17/46 (36%), Positives = 20/46 (43%) Frame = +3 Query: 324 CNKGGNCCCHSLLDCVCTLWYKSRFCSP*GAEPKGSDSSVLLFICK 461 CN GGNC C +C CT K+ CS P G +CK Sbjct: 12 CNCGGNCSC---TNCACTSCKKTSCCS---CCPAGCSKCASGCVCK 51
>RA54B_MOUSE (Q6PFE3) DNA repair and recombination protein RAD54B (EC 3.6.1.-)| (RAD54 homolog B) Length = 886 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/50 (26%), Positives = 23/50 (46%) Frame = +3 Query: 228 LSRTACEGSVFVCVQNIQMASWDVEXXXXXXYCNKGGNCCCHSLLDCVCT 377 +S+ G+V ++ + + VE ++ +C H LLDC CT Sbjct: 761 ISKQGLSGAVVDLTRSSEHIQFSVEELKNLFTLHESSHCVTHDLLDCECT 810
>YDX3_SCHPO (O14166) Hypothetical protein C4C5.03 in chromosome I| Length = 302 Score = 29.6 bits (65), Expect = 4.6 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = +2 Query: 86 YGLVGLMKYLIMLVCCSMMVLSARFQGQILCA*GLPQGQCTQIQPVPFIQDSV*RQ 253 YGL+G+ + + ++C S VLS+ F G C +Q VP I ++ Q Sbjct: 158 YGLLGVFTWGLFIICLSATVLSSNFAWAAFL--GFSASFCAVVQYVPQIIKTIRHQ 211
>BARH2_DROME (Q24256) Homeobox protein B-H2 (Homeobox protein BarH2)| Length = 645 Score = 29.6 bits (65), Expect = 4.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -3 Query: 121 HYQILHQPDQAIAQRQHNHPH 59 HY +L Q Q Q+QH HPH Sbjct: 189 HYAVLQQQQQQQQQQQHPHPH 209
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -3 Query: 145 NHHRTTH*HYQILHQPDQAIAQRQHNHPH 59 +HH TT H H Q +QH+HPH Sbjct: 280 DHHSTTEHHAPPSHPQQQHPHHQQHHHPH 308
>EX7S_XYLFA (Q9PFJ7) Probable exodeoxyribonuclease VII small subunit (EC| 3.1.11.6) (Exonuclease VII small subunit) Length = 88 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +1 Query: 175 MRLRLASGPMHPDTACPFYP 234 +R+RL S PMHPD PF P Sbjct: 62 LRVRLLSDPMHPDDGEPFDP 81
>HAND1_CHICK (Q90691) Heart- and neural crest derivatives-expressed protein 1| (Extraembryonic tissues, heart, autonomic nervous system and neural crest derivatives-expressed protein 1) (eHAND) Length = 202 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Frame = -3 Query: 151 GQNHHRTTH*HYQILHQPDQ-AIAQRQHNHPH*IP*CVSNPLQIHP 17 G HH H H+ +LH+P A R H P V NP ++ P Sbjct: 6 GYQHHHHHHHHHHMLHEPFLFGPAARCHQERAYFPGWVLNPAEVTP 51
>ORC3_MOUSE (Q9JK30) Origin recognition complex subunit 3 (Origin recognition| complex subunit Latheo) Length = 715 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = -3 Query: 439 EESDPLGSAPQGEQNLDLYH 380 EE D GS P+G Q DLYH Sbjct: 516 EEEDACGSQPKGLQKTDLYH 535 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,962,745 Number of Sequences: 219361 Number of extensions: 1480193 Number of successful extensions: 4225 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4069 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4216 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
