ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05a07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_549989.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3562 Score = 327 bits (165), Expect = 2e-86 Identities = 383/456 (83%) Strand = Plus / Plus Query: 34 gatttgagacgcatcagggaattcaatgtgggtgattatgttgtctctgggctatggctt 93 ||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||| Sbjct: 793 gatttgagacgcatcagggaatttaacgtaggtgattatgttgtctctgggccatggctt 852 Query: 94 ggtcgggttgatgaagtatttgataatgttagtgtgttgttcgatgatggttctgtccgc 153 ||||| || || || || || |||||||||| |||||| || ||||| || || ||| | Sbjct: 853 ggtcgagtcgacgaggtgttggataatgttaatgtgttatttgatgacggctccgtctgt 912 Query: 154 aaggtttcaagggcagatcctatgcgcctaaggcttgcctcagggccaatgcacccagat 213 || || | ||||||||||||||||| ||||||| || | |||||| || | ||| || Sbjct: 913 aaagtagccagggcagatcctatgcggctaaggccagcattggggccactgaatccaaat 972 Query: 214 acagcctgtcccttttatccaggacagcgtgtgaaggcagtgtcttcgtctgtgtacaaa 273 || ||||||||||||||| ||||||||||| ||||||||| ||| ||||| |||||| Sbjct: 973 gcaagctgtcccttttatcctggacagcgtgtcaaggcagtgaattcatctgtttacaaa 1032 Query: 274 acatccagatggcttcatgggatgtggaaagctagtcgtcttgaagctactgtaacaaag 333 |||||||| ||||| |||| | |||||||| ||||||||||||| ||||| |||||| Sbjct: 1033 acatccaggtggctcaatggactatggaaagcaagtcgtcttgaaggcactgtcacaaag 1092 Query: 334 gtggaaactgctgctgtcatagtctattggattgcgtctgcacactgtggtacaaatcaa 393 |||||||| | ||| || ||||||||||||||||| |||||||||| || || |||||| Sbjct: 1093 gtggaaacagttgcagttatagtctattggattgcatctgcacactttgccacgaatcaa 1152 Query: 394 gattctgttccccctgaggagcagaacccaaaggatctgactcttctgtcttgcttttca 453 || |||||||| ||||| ||||||||||||||||||||||||||| | ||||| |||||| Sbjct: 1153 gaatctgttcctcctgaagagcagaacccaaaggatctgactcttttatcttgtttttca 1212 Query: 454 tatgcaagctggncattggctgattggtgtcatcct 489 ||||||| ||| ||| |||||||||||| |||| Sbjct: 1213 tatgcaaattggcaattaactgattggtgtcttcct 1248
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 327 bits (165), Expect = 2e-86 Identities = 383/456 (83%) Strand = Plus / Plus Query: 34 gatttgagacgcatcagggaattcaatgtgggtgattatgttgtctctgggctatggctt 93 ||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||| Sbjct: 1422875 gatttgagacgcatcagggaatttaacgtaggtgattatgttgtctctgggccatggctt 1422934 Query: 94 ggtcgggttgatgaagtatttgataatgttagtgtgttgttcgatgatggttctgtccgc 153 ||||| || || || || || |||||||||| |||||| || ||||| || || ||| | Sbjct: 1422935 ggtcgagtcgacgaggtgttggataatgttaatgtgttatttgatgacggctccgtctgt 1422994 Query: 154 aaggtttcaagggcagatcctatgcgcctaaggcttgcctcagggccaatgcacccagat 213 || || | ||||||||||||||||| ||||||| || | |||||| || | ||| || Sbjct: 1422995 aaagtagccagggcagatcctatgcggctaaggccagcattggggccactgaatccaaat 1423054 Query: 214 acagcctgtcccttttatccaggacagcgtgtgaaggcagtgtcttcgtctgtgtacaaa 273 || ||||||||||||||| ||||||||||| ||||||||| ||| ||||| |||||| Sbjct: 1423055 gcaagctgtcccttttatcctggacagcgtgtcaaggcagtgaattcatctgtttacaaa 1423114 Query: 274 acatccagatggcttcatgggatgtggaaagctagtcgtcttgaagctactgtaacaaag 333 |||||||| ||||| |||| | |||||||| ||||||||||||| ||||| |||||| Sbjct: 1423115 acatccaggtggctcaatggactatggaaagcaagtcgtcttgaaggcactgtcacaaag 1423174 Query: 334 gtggaaactgctgctgtcatagtctattggattgcgtctgcacactgtggtacaaatcaa 393 |||||||| | ||| || ||||||||||||||||| |||||||||| || || |||||| Sbjct: 1423175 gtggaaacagttgcagttatagtctattggattgcatctgcacactttgccacgaatcaa 1423234 Query: 394 gattctgttccccctgaggagcagaacccaaaggatctgactcttctgtcttgcttttca 453 || |||||||| ||||| ||||||||||||||||||||||||||| | ||||| |||||| Sbjct: 1423235 gaatctgttcctcctgaagagcagaacccaaaggatctgactcttttatcttgtttttca 1423294 Query: 454 tatgcaagctggncattggctgattggtgtcatcct 489 ||||||| ||| ||| |||||||||||| |||| Sbjct: 1423295 tatgcaaattggcaattaactgattggtgtcttcct 1423330
>dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0037C04 Length = 137879 Score = 327 bits (165), Expect = 2e-86 Identities = 383/456 (83%) Strand = Plus / Plus Query: 34 gatttgagacgcatcagggaattcaatgtgggtgattatgttgtctctgggctatggctt 93 ||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||| Sbjct: 120926 gatttgagacgcatcagggaatttaacgtaggtgattatgttgtctctgggccatggctt 120985 Query: 94 ggtcgggttgatgaagtatttgataatgttagtgtgttgttcgatgatggttctgtccgc 153 ||||| || || || || || |||||||||| |||||| || ||||| || || ||| | Sbjct: 120986 ggtcgagtcgacgaggtgttggataatgttaatgtgttatttgatgacggctccgtctgt 121045 Query: 154 aaggtttcaagggcagatcctatgcgcctaaggcttgcctcagggccaatgcacccagat 213 || || | ||||||||||||||||| ||||||| || | |||||| || | ||| || Sbjct: 121046 aaagtagccagggcagatcctatgcggctaaggccagcattggggccactgaatccaaat 121105 Query: 214 acagcctgtcccttttatccaggacagcgtgtgaaggcagtgtcttcgtctgtgtacaaa 273 || ||||||||||||||| ||||||||||| ||||||||| ||| ||||| |||||| Sbjct: 121106 gcaagctgtcccttttatcctggacagcgtgtcaaggcagtgaattcatctgtttacaaa 121165 Query: 274 acatccagatggcttcatgggatgtggaaagctagtcgtcttgaagctactgtaacaaag 333 |||||||| ||||| |||| | |||||||| ||||||||||||| ||||| |||||| Sbjct: 121166 acatccaggtggctcaatggactatggaaagcaagtcgtcttgaaggcactgtcacaaag 121225 Query: 334 gtggaaactgctgctgtcatagtctattggattgcgtctgcacactgtggtacaaatcaa 393 |||||||| | ||| || ||||||||||||||||| |||||||||| || || |||||| Sbjct: 121226 gtggaaacagttgcagttatagtctattggattgcatctgcacactttgccacgaatcaa 121285 Query: 394 gattctgttccccctgaggagcagaacccaaaggatctgactcttctgtcttgcttttca 453 || |||||||| ||||| ||||||||||||||||||||||||||| | ||||| |||||| Sbjct: 121286 gaatctgttcctcctgaagagcagaacccaaaggatctgactcttttatcttgtttttca 121345 Query: 454 tatgcaagctggncattggctgattggtgtcatcct 489 ||||||| ||| ||| |||||||||||| |||| Sbjct: 121346 tatgcaaattggcaattaactgattggtgtcttcct 121381
>dbj|AK103631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133P14, full insert sequence Length = 3560 Score = 327 bits (165), Expect = 2e-86 Identities = 383/456 (83%) Strand = Plus / Plus Query: 34 gatttgagacgcatcagggaattcaatgtgggtgattatgttgtctctgggctatggctt 93 ||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||| Sbjct: 791 gatttgagacgcatcagggaatttaacgtaggtgattatgttgtctctgggccatggctt 850 Query: 94 ggtcgggttgatgaagtatttgataatgttagtgtgttgttcgatgatggttctgtccgc 153 ||||| || || || || || |||||||||| |||||| || ||||| || || ||| | Sbjct: 851 ggtcgagtcgacgaggtgttggataatgttaatgtgttatttgatgacggctccgtctgt 910 Query: 154 aaggtttcaagggcagatcctatgcgcctaaggcttgcctcagggccaatgcacccagat 213 || || | ||||||||||||||||| ||||||| || | |||||| || | ||| || Sbjct: 911 aaagtagccagggcagatcctatgcggctaaggccagcattggggccactgaatccaaat 970 Query: 214 acagcctgtcccttttatccaggacagcgtgtgaaggcagtgtcttcgtctgtgtacaaa 273 || ||||||||||||||| ||||||||||| ||||||||| ||| ||||| |||||| Sbjct: 971 gcaagctgtcccttttatcctggacagcgtgtcaaggcagtgaattcatctgtttacaaa 1030 Query: 274 acatccagatggcttcatgggatgtggaaagctagtcgtcttgaagctactgtaacaaag 333 |||||||| ||||| |||| | |||||||| ||||||||||||| ||||| |||||| Sbjct: 1031 acatccaggtggctcaatggactatggaaagcaagtcgtcttgaaggcactgtcacaaag 1090 Query: 334 gtggaaactgctgctgtcatagtctattggattgcgtctgcacactgtggtacaaatcaa 393 |||||||| | ||| || ||||||||||||||||| |||||||||| || || |||||| Sbjct: 1091 gtggaaacagttgcagttatagtctattggattgcatctgcacactttgccacgaatcaa 1150 Query: 394 gattctgttccccctgaggagcagaacccaaaggatctgactcttctgtcttgcttttca 453 || |||||||| ||||| ||||||||||||||||||||||||||| | ||||| |||||| Sbjct: 1151 gaatctgttcctcctgaagagcagaacccaaaggatctgactcttttatcttgtttttca 1210 Query: 454 tatgcaagctggncattggctgattggtgtcatcct 489 ||||||| ||| ||| |||||||||||| |||| Sbjct: 1211 tatgcaaattggcaattaactgattggtgtcttcct 1246
>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0044F08 Length = 141528 Score = 327 bits (165), Expect = 2e-86 Identities = 383/456 (83%) Strand = Plus / Plus Query: 34 gatttgagacgcatcagggaattcaatgtgggtgattatgttgtctctgggctatggctt 93 ||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||| Sbjct: 72496 gatttgagacgcatcagggaatttaacgtaggtgattatgttgtctctgggccatggctt 72555 Query: 94 ggtcgggttgatgaagtatttgataatgttagtgtgttgttcgatgatggttctgtccgc 153 ||||| || || || || || |||||||||| |||||| || ||||| || || ||| | Sbjct: 72556 ggtcgagtcgacgaggtgttggataatgttaatgtgttatttgatgacggctccgtctgt 72615 Query: 154 aaggtttcaagggcagatcctatgcgcctaaggcttgcctcagggccaatgcacccagat 213 || || | ||||||||||||||||| ||||||| || | |||||| || | ||| || Sbjct: 72616 aaagtagccagggcagatcctatgcggctaaggccagcattggggccactgaatccaaat 72675 Query: 214 acagcctgtcccttttatccaggacagcgtgtgaaggcagtgtcttcgtctgtgtacaaa 273 || ||||||||||||||| ||||||||||| ||||||||| ||| ||||| |||||| Sbjct: 72676 gcaagctgtcccttttatcctggacagcgtgtcaaggcagtgaattcatctgtttacaaa 72735 Query: 274 acatccagatggcttcatgggatgtggaaagctagtcgtcttgaagctactgtaacaaag 333 |||||||| ||||| |||| | |||||||| ||||||||||||| ||||| |||||| Sbjct: 72736 acatccaggtggctcaatggactatggaaagcaagtcgtcttgaaggcactgtcacaaag 72795 Query: 334 gtggaaactgctgctgtcatagtctattggattgcgtctgcacactgtggtacaaatcaa 393 |||||||| | ||| || ||||||||||||||||| |||||||||| || || |||||| Sbjct: 72796 gtggaaacagttgcagttatagtctattggattgcatctgcacactttgccacgaatcaa 72855 Query: 394 gattctgttccccctgaggagcagaacccaaaggatctgactcttctgtcttgcttttca 453 || |||||||| ||||| ||||||||||||||||||||||||||| | ||||| |||||| Sbjct: 72856 gaatctgttcctcctgaagagcagaacccaaaggatctgactcttttatcttgtttttca 72915 Query: 454 tatgcaagctggncattggctgattggtgtcatcct 489 ||||||| ||| ||| |||||||||||| |||| Sbjct: 72916 tatgcaaattggcaattaactgattggtgtcttcct 72951
>gb|AC167966.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940126D9, complete sequence Length = 125236 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 94 ggtcgggttgatgaagtatttg 115 |||||||||||||||||||||| Sbjct: 86263 ggtcgggttgatgaagtatttg 86284
>gb|AC132247.3| Mus musculus BAC clone RP24-424J1 from 19, complete sequence Length = 187078 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 aggtggaaactgctgctgtca 352 ||||||||||||||||||||| Sbjct: 82321 aggtggaaactgctgctgtca 82341
>gb|AY568293.1| Crithidia fasciculata paraflagellar rod protein (PFR2) mRNA, complete cds Length = 2632 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 attggctgattggtgtcatc 487 |||||||||||||||||||| Sbjct: 2595 attggctgattggtgtcatc 2576
>gb|AC146079.2| Pan troglodytes BAC clone RP43-46C10 from 7, complete sequence Length = 186437 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 tttgataatgttagtgtgtt 131 |||||||||||||||||||| Sbjct: 127762 tttgataatgttagtgtgtt 127743
>ref|XM_656774.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4262.2), mRNA Length = 3753 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 tggattgcgtctgcacactg 380 |||||||||||||||||||| Sbjct: 1787 tggattgcgtctgcacactg 1768
>gb|AF269991.1|AF269991 Staphylococcus epidermidis strain SR1 clone step.1039b02 genomic sequence Length = 3220 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 101 ttgatgaagtatttgataatgttagtgt 128 |||||||||||||||||| |||| |||| Sbjct: 1849 ttgatgaagtatttgatattgttcgtgt 1876
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 101 ttgatgaagtatttgataatgttagtgt 128 |||||||||||||||||| |||| |||| Sbjct: 1481469 ttgatgaagtatttgatattgttcgtgt 1481442
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 101 ttgatgaagtatttgataatgttagtgt 128 |||||||||||||||||| |||| |||| Sbjct: 1618755 ttgatgaagtatttgatattgttcgtgt 1618728
>gb|AC107050.3| Homo sapiens BAC clone RP11-182A9 from 4, complete sequence Length = 167699 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tgcttttcatatgcaagctg 464 |||||||||||||||||||| Sbjct: 4321 tgcttttcatatgcaagctg 4302 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,295,548 Number of Sequences: 3902068 Number of extensions: 4295548 Number of successful extensions: 76252 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76194 Number of HSP's gapped (non-prelim): 53 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
