ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl05a05 |
|---|---|
| Clone Library Name | barley_pub |
>ATM_ARATH (Q9M3G7) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia| telangiectasia mutated homolog) (AtATM) Length = 3856 Score = 58.9 bits (141), Expect = 7e-09 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 1/108 (0%) Frame = +3 Query: 33 EKEGFRVSDLVWGKVKSHPWWPGEIFDPSNASELALKHQKKGGRLVAYFGDNSF-AWCDD 209 E + F V +LVW K WWPGE+ D K K +V G + +W Sbjct: 102 ETQEFLVGNLVWVMTKYKKWWPGEVVD--------FKADAKESFMVRSIGQSHLVSWFAS 153 Query: 210 SQLKPFVTDYSQMEKQSSADSFVGSVNYALEELSRRILSGMSCSCLPE 353 S+LKPF + Q+ Q + + F ++ A+ LS + M+CSC+ + Sbjct: 154 SKLKPFKESFEQVLNQRNDNGFFDALQKAMSLLSNSLKLDMTCSCIAD 201
>ATX3_ARATH (Q9M364) Histone-lysine N-methyltransferase ATX3 (EC 2.1.1.43)| (Trithorax-homolog protein 3) (TRX-homolog protein 3) (Protein SET DOMAIN GROUP 14) Length = 902 Score = 49.7 bits (117), Expect = 4e-06 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 9/98 (9%) Frame = +3 Query: 39 EGFRVSDLVWGKV-KSHPWWPGEIFDP-SNASELALKHQKKGGRLVAYFG------DNSF 194 E F V DLVW K K P WP + DP S A + LKH G V +FG + Sbjct: 185 EEFTVGDLVWAKCGKRFPAWPAVVIDPISQAPDGVLKHCVPGAICVMFFGYSKDGTQRDY 244 Query: 195 AWCDDSQLKPFVTDYSQMEKQSSADSFVGS-VNYALEE 305 AW + PF + + Q++ ++ S N ALEE Sbjct: 245 AWVRQGMVYPFTEFMDKFQDQTNLFNYKASEFNKALEE 282
>DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)| (Dnmt3b) (DNA methyltransferase HsaIIIB) (DNA MTase HsaIIIB) (M.HsaIIIB) Length = 853 Score = 47.8 bits (112), Expect = 2e-05 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 12/145 (8%) Frame = +3 Query: 45 FRVSDLVWGKVKSHPWWPGEIFDPSNASELALKHQKKGGRLVAYFGDNSFAWCDDSQLKP 224 F + DLVWGK+K WWP + S+ + G R V +FGD F+ +L Sbjct: 223 FGIGDLVWGKIKGFSWWPAMVVSWKATSK---RQAMSGMRWVQWFGDGKFSEVSADKLVA 279 Query: 225 --FVTDYSQMEKQSSADSFVGSVNYALEELSRRILSGMSCSCLPEELSDNGMSYMVENA- 395 + + + + S+ ++ +ALE+ R+ +G + P + ++ + M+E A Sbjct: 280 LGLFSQHFNLATFNKLVSYRKAMYHALEK--ARVRAGKTFPSSPGDSLEDQLKPMLEWAH 337 Query: 396 ---------GLKDGVTCSAVNRSEI 443 GLK T VN+S++ Sbjct: 338 GGFKPTGIEGLKPNNTQPVVNKSKV 362
>DNM3B_MOUSE (O88509) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)| (Dnmt3b) (DNA methyltransferase MmuIIIB) (DNA MTase MmuIIIB) (M.MmuIIIB) Length = 859 Score = 47.8 bits (112), Expect = 2e-05 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 12/150 (8%) Frame = +3 Query: 45 FRVSDLVWGKVKSHPWWPGEIFDPSNASELALKHQKKGGRLVAYFGDNSFAWCDDSQLKP 224 F + DLVWGK+K WWP + S+ + G R V +FGD F+ +L Sbjct: 230 FGIGDLVWGKIKGFSWWPAMVVSWKATSK---RQAMPGMRWVQWFGDGKFSEISADKLVA 286 Query: 225 --FVTDYSQMEKQSSADSFVGSVNYALEELSRRILSGMSCSCLPEELSDNGMSYMVENA- 395 + + + + S+ ++ + LE+ R+ +G + S P E ++ + M+E A Sbjct: 287 LGLFSQHFNLATFNKLVSYRKAMYHTLEK--ARVRAGKTFSSSPGESLEDQLKPMLEWAH 344 Query: 396 ---------GLKDGVTCSAVNRSEILASFS 458 GLK VN+S++ S S Sbjct: 345 GGFKPTGIEGLKPNKKQPVVNKSKVRRSDS 374
>ATX5_ARATH (Q8GZ42) Histone-lysine N-methyltransferase ATX5 (EC 2.1.1.43)| (Trithorax-homolog protein 5) (TRX-homolog protein 5) (Protein SET DOMAIN GROUP 29) Length = 1043 Score = 46.2 bits (108), Expect = 5e-05 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Frame = +3 Query: 39 EGFRVSDLVWGKV-KSHPWWPGEIFDP-SNASELALKHQKKGGRLVAYFG------DNSF 194 E F DLVWGK ++ P+WP + DP + A EL L+ V +FG + + Sbjct: 219 EDFYSGDLVWGKSGRNEPFWPAIVIDPMTQAPELVLRSCIPDAACVMFFGHSGTENERDY 278 Query: 195 AWCDDSQLKPFVTDYSQMEKQS 260 AW + PFV ++++QS Sbjct: 279 AWVRRGMIFPFVDYVERLQEQS 300
>DNM3A_MOUSE (O88508) DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37)| (Dnmt3a) (DNA methyltransferase MmuIIIA) (DNA MTase MmuIIIA) (M.MmuIIIA) Length = 908 Score = 45.4 bits (106), Expect = 8e-05 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Frame = +3 Query: 42 GFRVSDLVWGKVKSHPWWPGEIFD--PSNASELALKHQKKGGRLVAYFGDNSFAWCDDSQ 215 GF + +LVWGK++ WWPG I + S A +G R V +FGD F+ + Sbjct: 285 GFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAA-----EGTRWVMWFGDGKFSVVCVEK 339 Query: 216 LKPFVTDYSQMEKQS-SADSFVGSVNYALEELSRRILSGMSCSCLPEELSDNGMSYMVEN 392 L P + S + + + Y + +++ + +C + SD+G + V+N Sbjct: 340 LMPLSSFCSAFHQATYNKQPMYRKAIYEVLQVASSRAGKLFPACHDSDESDSGKAVEVQN 399
>ATX4_ARATH (Q9SUE7) Histone-lysine N-methyltransferase ATX4 (EC 2.1.1.43)| (Trithorax-homolog protein 4) (TRX-homolog protein 4) (Trithorax 4) (Protein SET DOMAIN GROUP 16) Length = 990 Score = 44.7 bits (104), Expect = 1e-04 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 9/98 (9%) Frame = +3 Query: 39 EGFRVSDLVWGKV-KSHPWWPGEIFDP-SNASELALKHQKKGGRLVAYFG------DNSF 194 E F DLVW K ++ P+WP + DP + A EL L+ V +FG + + Sbjct: 203 ENFYSGDLVWAKSGRNEPFWPAIVIDPMTQAPELVLRSCIPDAACVVFFGHSGNENERDY 262 Query: 195 AWCDDSQLKPFVTDYSQMEKQSSADSF-VGSVNYALEE 305 AW + PFV ++ ++Q G+ ALEE Sbjct: 263 AWVRRGMIFPFVDYVARFQEQPELQGCKPGNFQMALEE 300
>NSD1_MOUSE (O88491) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) Length = 2588 Score = 43.1 bits (100), Expect = 4e-04 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Frame = +3 Query: 57 DLVWGKVKSHPWWPGEIFDP-SNASELALKHQKKGGRLVAYFGDNSFAWCDDSQLKPFVT 233 ++VW KV + WWP EI P + S + G V +FG N + W +++ P++ Sbjct: 1656 EIVWVKVGRYRWWPAEICHPRAVPSNIDKMRHDVGEFPVLFFGSNDYLWTHQARVFPYME 1715 Query: 234 -DYSQMEKQSSADSFVGSVNYALEELSRR 317 D S +K G+ AL+E + R Sbjct: 1716 GDVSSKDKMGKGVD--GTYKKALQEAAAR 1742
>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) (Androgen r Length = 2696 Score = 43.1 bits (100), Expect = 4e-04 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Frame = +3 Query: 57 DLVWGKVKSHPWWPGEIFDP-SNASELALKHQKKGGRLVAYFGDNSFAWCDDSQLKPFVT 233 ++VW KV + WWP EI P + S + G V +FG N + W +++ P++ Sbjct: 1758 EIVWVKVGRYRWWPAEICHPRAVPSNIDKMRHDVGEFPVLFFGSNDYLWTHQARVFPYME 1817 Query: 234 -DYSQMEKQSSADSFVGSVNYALEELSRR 317 D S +K G+ AL+E + R Sbjct: 1818 GDVSSKDKMGKGVD--GTYKKALQEAAAR 1844 Score = 33.9 bits (76), Expect = 0.24 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +3 Query: 45 FRVSDLVWGKVKSHPWWPGEI 107 + V DL+W K K PWWP I Sbjct: 321 YEVGDLIWAKFKRRPWWPCRI 341
>DNM3A_HUMAN (Q9Y6K1) DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37)| (Dnmt3a) (DNA methyltransferase HsaIIIA) (DNA MTase HsaIIIA) (M.HsaIIIA) Length = 909 Score = 42.7 bits (99), Expect = 5e-04 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = +3 Query: 42 GFRVSDLVWGKVKSHPWWPGEIFD--PSNASELALKHQKKGGRLVAYFGDNSFAWCDDSQ 215 GF + +LVWGK++ WWPG I + S A +G R V +FGD F+ + Sbjct: 286 GFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAA-----EGTRWVMWFGDGKFSVVCVEK 340 Query: 216 LKP 224 L P Sbjct: 341 LMP 343
>MSH6_MOUSE (P54276) DNA mismatch repair protein MSH6 (MutS-alpha 160 kDa| subunit) (G/T mismatch-binding protein) (GTBP) (GTMBP) (p160) Length = 1358 Score = 41.6 bits (96), Expect = 0.001 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Frame = +3 Query: 9 SRYSLPPLEKEGFRVSDLVWGKVKSHPWWPGEIFDPSNASELALKHQKKGGRLVAYFGDN 188 S ++PP + F DLVW K++ +PWWP +++ K K V +F D+ Sbjct: 79 SAQAVPPSSCD-FSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIRKKGKSVRVHVQFFDDS 137 Query: 189 -SFAWCDDSQLKPFVTDYSQMEKQ-----SSADSFVGSVNYALEELSR 314 + W LKP+ S+ ++ SS + ++ A E LS+ Sbjct: 138 PTRGWVSKRMLKPYTGSKSKEAQKGGHFYSSKSEILRAMQRADEALSK 185
>ATX1_ARATH (Q9C5X4) Histone-lysine N-methyltransferase, H3 lysine-4 specific| ATX1 (EC 2.1.1.43) (H3-K4-HMTase) (Trithorax-homolog protein 1) (TRX-homolog protein 1) (Protein SET DOMAIN GROUP 27) Length = 1062 Score = 39.3 bits (90), Expect = 0.006 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +3 Query: 33 EKEGFRVSDLVWGKVKSHPWWPGEIFDPSNASE---LALKHQKKGGRLVAYFGDNSFAWC 203 E + F D+VW K+ H WP I D S E L K G LV +FG + FA Sbjct: 295 ECQDFEPGDIVWAKLAGHAMWPAVIVDESIIGERKGLNNKVSGGGSLLVQFFGTHDFARI 354 Query: 204 DDSQLKPFV 230 Q F+ Sbjct: 355 KVKQAISFI 363
>ATX2_ARATH (Q9MA43) Histone-lysine N-methyltransferase ATX2 (EC 2.1.1.43)| (Trithorax-homolog protein 2) (TRX-homolog protein 2) (Protein SET DOMAIN GROUP 30) Length = 1193 Score = 38.5 bits (88), Expect = 0.010 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Frame = +3 Query: 33 EKEGFRVSDLVWGKVKSHPWWPGEIFDPS-NASELALKHQKKGGR--LVAYFGDNSFA 197 E + F D++W K+ H WP I D S L ++ GGR LV +FG + FA Sbjct: 306 ECQDFEPRDIIWAKLTGHAMWPAIIVDESVIVKRKGLNNKISGGRSVLVQFFGTHDFA 363
>MSH6_HUMAN (P52701) DNA mismatch repair protein MSH6 (MutS-alpha 160 kDa| subunit) (G/T mismatch binding protein) (GTBP) (GTMBP) (p160) Length = 1360 Score = 37.4 bits (85), Expect = 0.022 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Frame = +3 Query: 45 FRVSDLVWGKVKSHPWWPGEIFD-PSNASELALKHQKKGGRLVAYFGDNS--FAWCDDSQ 215 F DLVW K++ +PWWP +++ P + + ++ + K R+ F D+S W Sbjct: 90 FSPGDLVWAKMEGYPWWPCLVYNHPFDGT--FIREKGKSVRVHVQFFDDSPTRGWVSKRL 147 Query: 216 LKPFVTDYSQ 245 LKP+ S+ Sbjct: 148 LKPYTGSKSK 157
>MES4_DROME (Q8MT36) Probable histone methyltransferase Mes-4 (Maternal-effect| sterile 4) Length = 1427 Score = 33.9 bits (76), Expect = 0.24 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = +3 Query: 57 DLVWGKVKSHPWWPGEIFDPSNA-SELALKHQKKGGRLVAYFGDNSFAW 200 ++VW K + WWP I P+ S + K + +V +FG + W Sbjct: 1051 EIVWAKFNNFRWWPAIILPPTEVPSNILKKAHGENDFVVRFFGTHDHGW 1099
>YH57_SCHPO (O94312) PWWP domain protein C215.07c| Length = 568 Score = 33.9 bits (76), Expect = 0.24 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Frame = +3 Query: 33 EKEGFRVSDLVWGKVKSHPWWPGEIFDPSNASELALKHQ-KKGGRL--VAYFGDNSFAWC 203 E+ ++ V K+ PWWP + S + +A K + K+ G V +F + + W Sbjct: 119 ERVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWT 178 Query: 204 DDSQLKPFVTD 236 L P ++ Sbjct: 179 GSDSLTPLTSE 189
>HDGF_RAT (Q8VHK7) Hepatoma-derived growth factor (HDGF)| Length = 237 Score = 32.7 bits (73), Expect = 0.53 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Frame = +3 Query: 45 FRVSDLVWGKVKSHPWWPGEIFDPSNAS--ELALKHQKKGGRLVAYFGDNSFAWCDDSQL 218 ++ DLV+ K+K +P WP I + A+ A K+Q V +FG + A+ L Sbjct: 10 YKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQ------VFFFGTHETAFLGPKDL 63 Query: 219 KPFVTDYSQMEKQSSADSF 275 P+ + K + F Sbjct: 64 FPYEESKEKFGKPNKRKGF 82
>HDGF_MOUSE (P51859) Hepatoma-derived growth factor (HDGF)| Length = 237 Score = 32.7 bits (73), Expect = 0.53 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Frame = +3 Query: 45 FRVSDLVWGKVKSHPWWPGEIFDPSNAS--ELALKHQKKGGRLVAYFGDNSFAWCDDSQL 218 ++ DLV+ K+K +P WP I + A+ A K+Q V +FG + A+ L Sbjct: 10 YKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQ------VFFFGTHETAFLGPKDL 63 Query: 219 KPFVTDYSQMEKQSSADSF 275 P+ + K + F Sbjct: 64 FPYEESKEKFGKPNKRKGF 82
>HDGF_HUMAN (P51858) Hepatoma-derived growth factor (HDGF) (High-mobility group| protein 1-like 2) (HMG-1L2) Length = 240 Score = 32.7 bits (73), Expect = 0.53 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Frame = +3 Query: 45 FRVSDLVWGKVKSHPWWPGEIFDPSNAS--ELALKHQKKGGRLVAYFGDNSFAWCDDSQL 218 ++ DLV+ K+K +P WP I + A+ A K+Q V +FG + A+ L Sbjct: 10 YKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQ------VFFFGTHETAFLGPKDL 63 Query: 219 KPFVTDYSQMEKQSSADSF 275 P+ + K + F Sbjct: 64 FPYEESKEKFGKPNKRKGF 82
>HDGF_BOVIN (Q9XSK7) Hepatoma-derived growth factor (HDGF)| Length = 239 Score = 32.7 bits (73), Expect = 0.53 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Frame = +3 Query: 45 FRVSDLVWGKVKSHPWWPGEIFDPSNAS--ELALKHQKKGGRLVAYFGDNSFAWCDDSQL 218 ++ DLV+ K+K +P WP I + A+ A K+Q V +FG + A+ L Sbjct: 10 YKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQ------VFFFGTHETAFLGPKDL 63 Query: 219 KPFVTDYSQMEKQSSADSF 275 P+ + K + F Sbjct: 64 FPYEESKEKFGKPNKRKGF 82
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 32.3 bits (72), Expect = 0.70 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 13/71 (18%) Frame = -1 Query: 270 NPHYSVSPSVNSLLQKASTGNRRTMQNCCHQNMQ------PNDR-------PFSGASMPT 130 NP +SP V++LLQ T N R + NCC M P D PF A + + Sbjct: 444 NPEIHLSPMVSALLQ-GLTDNPRIVANCCWAFMNLVCHFAPVDNHQTSVMTPFYEAIIGS 502 Query: 129 QMHLKDQRSHQ 97 +H+ DQ+ ++ Sbjct: 503 LLHVTDQKGNE 513
>VPP_BPP2 (P25479) Terminase, ATPase subunit (GpP)| Length = 590 Score = 32.0 bits (71), Expect = 0.91 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 17/82 (20%) Frame = +3 Query: 81 SHPWWPGEIFDPSNAS-----ELALKHQKKGGRLVAYFGDNSFAWCDDSQLKPFVT---- 233 ++P+W GE+F+ AS E+ + H G L+ C D Q + VT Sbjct: 292 AYPFWSGELFNRGRASAAERVEIDVSHNALAGGLL----------CADGQWRQIVTIEDA 341 Query: 234 --------DYSQMEKQSSADSF 275 D Q+++++SAD F Sbjct: 342 LKGGCTLFDIEQLKRENSADDF 363
>ZCPW1_HUMAN (Q9H0M4) Zinc finger CW-type PWWP domain protein 1| Length = 494 Score = 32.0 bits (71), Expect = 0.91 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 11/67 (16%) Frame = +3 Query: 60 LVWGKVKSHPWWPGEI-FDP---------SNASELALKHQKKGGRLVAYFGDN-SFAWCD 206 ++W K +PWWPG I DP S+ L K+ V +FG+ S AW Sbjct: 320 IIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYH------VTFFGETVSRAWIP 373 Query: 207 DSQLKPF 227 + LK F Sbjct: 374 VNMLKNF 380
>MBD5_HUMAN (Q9P267) Methyl-CpG-binding domain protein 5 (Methyl-CpG-binding| protein MBD5) Length = 1494 Score = 31.6 bits (70), Expect = 1.2 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +3 Query: 45 FRVSDLVWGKVKSHPWWPGEI 107 F V DLVWG++K WPG++ Sbjct: 1383 FNVGDLVWGQIKGLTSWPGKL 1403
>ZCPW1_MOUSE (Q6IR42) Zinc finger CW-type PWWP domain protein 1 homolog| Length = 630 Score = 31.2 bits (69), Expect = 1.6 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 11/67 (16%) Frame = +3 Query: 60 LVWGKVKSHPWWPGEI-FDP---------SNASELALKHQKKGGRLVAYFGDN-SFAWCD 206 ++W K +PWWPG I DP S+ L K+ V +FG+ S AW Sbjct: 311 IIWAKQYGYPWWPGMIEADPDLGEYFLFASHLDSLPSKYH------VTFFGETVSRAWIP 364 Query: 207 DSQLKPF 227 LK F Sbjct: 365 VRMLKNF 371
>RPGR1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase regulator-interacting| protein 1 (RPGR-interacting protein 1) Length = 1331 Score = 30.8 bits (68), Expect = 2.0 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Frame = -1 Query: 333 SSPTVSALKVLQVHN*QNRQRNPHYSVSPSVNSLLQKASTGNRRTMQNCCHQNMQPNDRP 154 S+ T L+ L V R+R P S SPS ++ + G + +Q C + +P Sbjct: 80 STTTQPDLRTLAVLQEPERRRRPWVSASPSPSAPPRAPVPGRKAHVQRLCPSTAVGSAQP 139 Query: 153 --FSGASMPTQMHLKDQRSHQA 94 +G +P D+RSH A Sbjct: 140 RVHAGRRLPHIAGPNDRRSHTA 161
>INGR1_HUMAN (P15260) Interferon-gamma receptor alpha chain precursor| (IFN-gamma-R1) (CD119 antigen) (CDw119) Length = 489 Score = 30.8 bits (68), Expect = 2.0 Identities = 21/59 (35%), Positives = 29/59 (49%) Frame = +3 Query: 111 DPSNASELALKHQKKGGRLVAYFGDNSFAWCDDSQLKPFVTDYSQMEKQSSADSFVGSV 287 DPSN+ + +K + G + AY FA C D ++ P D + EKQ D F SV Sbjct: 93 DPSNSLWVRVK-ARVGQKESAYAKSEEFAVCRDGKIGPPKLDIRKEEKQIMIDIFHPSV 150
>YAE1_SCHPO (Q09842) Hypothetical PWWP domain protein C23D3.01| Length = 407 Score = 30.4 bits (67), Expect = 2.7 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%) Frame = +3 Query: 36 KEGFRVSDLVWGKVKSHPWWPGEIFD----PSNASE-LALKHQKKGGRLVAYFGDNSFAW 200 ++ ++ + V K+ S PWWP + P+ E L + G V + +A Sbjct: 58 RKSYKNGEYVLAKMSSFPWWPARVASQKSIPTEVRERLKRNFRMDNGIFVQFLPSRDYAI 117 Query: 201 CDDSQLKPFVTDYSQ 245 S + P D S+ Sbjct: 118 ISSSNVLPLTVDESR 132
>RPOC1_LOTJA (Q9BBS8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 682 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -3 Query: 217 NWESSHHAKLLSPKYATKRPPFFWCFNANSDAFEGSKISPGHQGWL 80 NW++S + K+ KY K+ PFF AF KI+ WL Sbjct: 561 NWKNSKNEKIRDKKYMKKKEPFFSNSYDAIGAFRQKKINFDSPFWL 606
>TRK1_LYMST (O76997) Putative neurotrophin receptor LTRK 1 precursor (EC| 2.7.10.1) Length = 794 Score = 30.0 bits (66), Expect = 3.5 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = +3 Query: 318 ILSGMSCSCLPEELSDNGMSYMVENAGLKDGVTCSAVNRSE 440 ILSG CS L + SDN + G++DGVT V+RS+ Sbjct: 25 ILSGAGCSPLSQLPSDN-----PAHVGVQDGVTTERVDRSK 60
>HPS3_MOUSE (Q91VB4) Hermansky-Pudlak syndrome 3 protein homolog (Cocoa| protein) Length = 1002 Score = 29.6 bits (65), Expect = 4.5 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 10/140 (7%) Frame = -1 Query: 390 SQPY---MTFHCQRALLAGKNSSSPTVSALKVLQVHN*QNRQRNPHYSVSPSVNSLLQKA 220 SQ Y + F+ +L + A KV Q+ + ++ PH SPS+ ++ Sbjct: 597 SQKYERGLVFYINHSLYENLDEELSKELAAKVAQIFHMAEPKQLPHVLSSPSMKNIDPLT 656 Query: 219 STGNRRTMQNCCHQNMQPNDRPFSGASMPTQ-----MHLKDQRSHQATK--GGFLLYPRQ 61 + R + +C + P + A++ + M+ + +SH K GF+L PR Sbjct: 657 ALHYLRKLDSC---GVSPVLVTLTKAAVALKMGDLDMYRNEMKSHSEMKLVYGFILEPR- 712 Query: 60 DQKL*SLLFQEEEGSIWSTE 1 LL Q+ +G I TE Sbjct: 713 ------LLIQQWKGQIVPTE 726
>PTDSR_DROME (Q9VD28) Protein PSR| Length = 408 Score = 29.3 bits (64), Expect = 5.9 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Frame = -3 Query: 166 KRPPFFWCFNANSDAFEGSKISP-----------GHQGWLFTLPQTRSETLKPSFSRGGR 20 +RPP+ W + + G I P GH+ W QT E LK + + GG+ Sbjct: 173 RRPPYRWFVMGPARSGTGIHIDPLGTSAWNTLIRGHKRWCLFPTQTPKELLKVTSAMGGK 232 Query: 19 E 17 + Sbjct: 233 Q 233
>DYHC_ASHGO (Q9C1M7) Dynein heavy chain, cytosolic (DYHC)| Length = 4083 Score = 29.3 bits (64), Expect = 5.9 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 99 GEIFDPSNASELALKHQKKGGRLVAYFGDN 188 GE FDP + +A + +K GGRL GD+ Sbjct: 3448 GEFFDPIISHLIAKEFKKAGGRLTVQIGDH 3477
>YD57_SCHPO (Q10310) Hypothetical protein C6C3.07 in chromosome I| Length = 515 Score = 28.9 bits (63), Expect = 7.7 Identities = 21/75 (28%), Positives = 37/75 (49%) Frame = +3 Query: 237 YSQMEKQSSADSFVGSVNYALEELSRRILSGMSCSCLPEELSDNGMSYMVENAGLKDGVT 416 ++ +K S F + +YA+EE SR ++ G S + PE N Y+++N +D + Sbjct: 434 FNNEKKDESYSGFSNTNSYAIEETSRALM-GTSKTRKPE----NKSKYLIKNGWFEDSL- 487 Query: 417 CSAVNRSEILASFSP 461 SEI + +P Sbjct: 488 -----NSEIWSDANP 497
>GAP2_DROME (Q8T498) Probable Ras GTPase-activating protein| Length = 1556 Score = 28.9 bits (63), Expect = 7.7 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Frame = -1 Query: 336 SSSPTVSALKV-LQVHN*QNRQRNPHYSVSPSVNSLLQKASTGNRRTMQNCCHQNMQPND 160 SSSP S LK + HN +NP Y + P S A + + Q Q Sbjct: 1138 SSSPVESQLKAAMGSHNAPLAFKNPSYQLQPQTGSSRSSAQSNTHQQQQQQQQQQFGSRL 1197 Query: 159 RPFSG 145 +P G Sbjct: 1198 KPIGG 1202
>TAH18_ASHGO (Q75B78) Probable NADPH reductase TAH18 (EC 1.-.-.-)| Length = 620 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/68 (25%), Positives = 30/68 (44%) Frame = +3 Query: 210 SQLKPFVTDYSQMEKQSSADSFVGSVNYALEELSRRILSGMSCSCLPEELSDNGMSYMVE 389 S L P + D+ Q+ DS N+A+ +L RI+ + + L + + Sbjct: 89 SSLPPTLLDHLQVAFLGLGDSSYSKFNFAIRKLHNRIVGQLGAREIFPRLEADAIGLAGS 148 Query: 390 NAGLKDGV 413 NAG +G+ Sbjct: 149 NAGNGNGI 156
>BRPF1_HUMAN (P55201) Peregrin (Bromodomain and PHD finger-containing protein 1)| (BR140 protein) Length = 1214 Score = 28.9 bits (63), Expect = 7.7 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +3 Query: 57 DLVWGKVKSHPWWPGEIFDPSNASELALKH 146 DLVW K + +P +P I DP E H Sbjct: 1087 DLVWAKCRGYPSYPALIIDPKMPREGMFHH 1116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,278,496 Number of Sequences: 219361 Number of extensions: 1570539 Number of successful extensions: 4602 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 4393 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4596 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
