ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196875.1| Oryza sativa (japonica cultivar-group) hypothet... 38 1.1
2ref|NM_196869.1| Oryza sativa (japonica cultivar-group) hypothet... 38 1.1
3ref|NM_018951.3| Homo sapiens homeobox A10 (HOXA10), transcript ... 38 1.1
4gb|AC146102.2| Pan troglodytes BAC clone RP43-21L13 from 7, comp... 38 1.1
5emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chr... 38 1.1
6emb|X58430.1|HSHOX18 Homo sapiens Hox1.8 gene for homeobox protein 38 1.1
7gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthe... 38 1.1
8gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 gen... 38 1.1
9gb|AC004080.2| Homo sapiens PAC clone RP1-170O19 from 7p15-p21, ... 38 1.1
10gb|AC161061.2| Pan troglodytes BAC clone CH251-489A6 from chromo... 38 1.1
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.1
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.1
13gb|AC104598.4| Homo sapiens BAC clone RP11-182K3 from 2, complet... 38 1.1
14gb|AC092153.4| Homo sapiens BAC clone RP11-252K7 from 2, complet... 38 1.1
15dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic D... 38 1.1
16dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic D... 38 1.1
17dbj|AP003702.2| Oryza sativa (japonica cultivar-group) genomic D... 38 1.1
18gb|BC013971.2| Homo sapiens homeobox A10, transcript variant 1, ... 38 1.1
19gb|BC007600.1| Homo sapiens homeobox A10, mRNA (cDNA clone IMAGE... 38 1.1
20gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 1.1
21gb|AF040714.1|AF040714 Homo sapiens homeobox protein A10 (HOXA10... 38 1.1
22gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 36 4.2
23ref|XM_812365.1| Trypanosoma cruzi strain CL Brener hypothetical... 36 4.2
24emb|BX511201.3|RN177J12 Rattus norvegicus chromosome 1 BAC RP32-... 36 4.2
25dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.2
26gb|AC008307.7|AC008307 Drosophila melanogaster, chromosome 3R, r... 36 4.2
27gb|AC007725.5|AC007725 Drosophila melanogaster, chromosome 3R, r... 36 4.2
28dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 36 4.2
29dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.2
30dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic D... 36 4.2
31gb|AE003693.3| Drosophila melanogaster chromosome 3R, section 31... 36 4.2
32emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 36 4.2 
>ref|NM_196875.1| Oryza sativa (japonica cultivar-group) hypothetical protein
          (OSJNBa0042E19.27), mRNA
          Length = 483

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 21 cccccgcgccaccaccacc 39
          |||||||||||||||||||
Sbjct: 72 cccccgcgccaccaccacc 90
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>ref|NM_196869.1| Oryza sativa (japonica cultivar-group) hypothetical protein
          (OSJNBa0042E19.23), mRNA
          Length = 483

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 21 cccccgcgccaccaccacc 39
          |||||||||||||||||||
Sbjct: 72 cccccgcgccaccaccacc 90
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>ref|NM_018951.3| Homo sapiens homeobox A10 (HOXA10), transcript variant 1, mRNA
          Length = 2648

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 21  cccccgcgccaccaccacc 39
           |||||||||||||||||||
Sbjct: 181 cccccgcgccaccaccacc 163
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>gb|AC146102.2| Pan troglodytes BAC clone RP43-21L13 from 7, complete sequence
          Length = 191971

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     cccccgcgccaccaccacc 39
              |||||||||||||||||||
Sbjct: 177993 cccccgcgccaccaccacc 178011
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>emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chromosome 6 Contains a novel
              gene,  the FOXP4 gene for forkhead box P4 and five CpG
              islands, complete sequence
          Length = 180547

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 16     actctcccccgcgccaccaccac 38
              |||||||||||| ||||||||||
Sbjct: 131797 actctcccccgcaccaccaccac 131819
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>emb|X58430.1|HSHOX18 Homo sapiens Hox1.8 gene for homeobox protein
          Length = 3510

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 21  cccccgcgccaccaccacc 39
           |||||||||||||||||||
Sbjct: 655 cccccgcgccaccaccacc 637
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>gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthetic gene cluster and
             flanking regions
          Length = 116831

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    cccccgcgccaccaccacc 39
             |||||||||||||||||||
Sbjct: 71176 cccccgcgccaccaccacc 71158



 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    cccccgcgccaccaccacc 39
             |||||||||||||||||||
Sbjct: 66817 cccccgcgccaccaccacc 66799



 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 22    ccccgcgccaccaccacc 39
             ||||||||||||||||||
Sbjct: 80115 ccccgcgccaccaccacc 80098



 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 22    ccccgcgccaccaccacc 39
             ||||||||||||||||||
Sbjct: 40759 ccccgcgccaccaccacc 40742
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>gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 genomic sequence, complete
             sequence
          Length = 149978

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    cccccgcgccaccaccacc 39
             |||||||||||||||||||
Sbjct: 95163 cccccgcgccaccaccacc 95145



 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    cccccgcgccaccaccacc 39
             |||||||||||||||||||
Sbjct: 75356 cccccgcgccaccaccacc 75338
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>gb|AC004080.2| Homo sapiens PAC clone RP1-170O19 from 7p15-p21, complete sequence
          Length = 129355

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    cccccgcgccaccaccacc 39
             |||||||||||||||||||
Sbjct: 47526 cccccgcgccaccaccacc 47544
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>gb|AC161061.2| Pan troglodytes BAC clone CH251-489A6 from chromosome 7, complete
              sequence
          Length = 177652

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     cccccgcgccaccaccacc 39
              |||||||||||||||||||
Sbjct: 110047 cccccgcgccaccaccacc 110065
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 21       cccccgcgccaccaccacc 39
                |||||||||||||||||||
Sbjct: 16477064 cccccgcgccaccaccacc 16477046



 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 21       cccccgcgccaccaccacc 39
                |||||||||||||||||||
Sbjct: 16457257 cccccgcgccaccaccacc 16457239
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 21      cccccgcgccaccaccacc 39
               |||||||||||||||||||
Sbjct: 1254775 cccccgcgccaccaccacc 1254757
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>gb|AC104598.4| Homo sapiens BAC clone RP11-182K3 from 2, complete sequence
          Length = 126118

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 17  ctctcccccgcgccaccaccacc 39
           ||||||||| |||||||||||||
Sbjct: 571 ctctccccctcgccaccaccacc 549
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>gb|AC092153.4| Homo sapiens BAC clone RP11-252K7 from 2, complete sequence
          Length = 150641

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 17     ctctcccccgcgccaccaccacc 39
              ||||||||| |||||||||||||
Sbjct: 149212 ctctccccctcgccaccaccacc 149190
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>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0474G09
          Length = 169511

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    cccccgcgccaccaccacc 39
             |||||||||||||||||||
Sbjct: 19610 cccccgcgccaccaccacc 19592
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>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0057M23
          Length = 168029

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     cccccgcgccaccaccacc 39
              |||||||||||||||||||
Sbjct: 156382 cccccgcgccaccaccacc 156364
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>dbj|AP003702.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1007_H09
          Length = 42137

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    cccccgcgccaccaccacc 39
             |||||||||||||||||||
Sbjct: 24352 cccccgcgccaccaccacc 24334
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>gb|BC013971.2| Homo sapiens homeobox A10, transcript variant 1, mRNA (cDNA clone
           MGC:12859 IMAGE:4107013), complete cds
          Length = 2618

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 21  cccccgcgccaccaccacc 39
           |||||||||||||||||||
Sbjct: 149 cccccgcgccaccaccacc 131
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>gb|BC007600.1| Homo sapiens homeobox A10, mRNA (cDNA clone IMAGE:3347294),
           complete cds
          Length = 1586

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 21  cccccgcgccaccaccacc 39
           |||||||||||||||||||
Sbjct: 140 cccccgcgccaccaccacc 122
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 21       cccccgcgccaccaccacc 39
                |||||||||||||||||||
Sbjct: 16485305 cccccgcgccaccaccacc 16485287



 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 21       cccccgcgccaccaccacc 39
                |||||||||||||||||||
Sbjct: 16465498 cccccgcgccaccaccacc 16465480
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>gb|AF040714.1|AF040714 Homo sapiens homeobox protein A10 (HOXA10) gene, complete cds
          Length = 2691

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 21  cccccgcgccaccaccacc 39
           |||||||||||||||||||
Sbjct: 419 cccccgcgccaccaccacc 401
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 16     actctcccccgcgccacc 33
              ||||||||||||||||||
Sbjct: 623850 actctcccccgcgccacc 623867
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>ref|XM_812365.1| Trypanosoma cruzi strain CL Brener hypothetical protein
          (Tc00.1047053506227.140) partial mRNA
          Length = 1323

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 22 ccccgcgccaccaccacc 39
          ||||||||||||||||||
Sbjct: 95 ccccgcgccaccaccacc 78
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>emb|BX511201.3|RN177J12 Rattus norvegicus chromosome 1 BAC RP32-177J12, complete sequence
          Length = 138052

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 19     ctcccccgcgccaccacc 36
              ||||||||||||||||||
Sbjct: 127243 ctcccccgcgccaccacc 127226
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                      
Query: 18       tctcccccgcgccaccaccacc 39
                |||||| |||||||||||||||
Sbjct: 12188700 tctcccgcgcgccaccaccacc 12188721
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>gb|AC008307.7|AC008307 Drosophila melanogaster, chromosome 3R, region 86F-87A, BAC clone
             BACR03D22, complete sequence
          Length = 157189

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 22    ccccgcgccaccaccacc 39
             ||||||||||||||||||
Sbjct: 91837 ccccgcgccaccaccacc 91820
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>gb|AC007725.5|AC007725 Drosophila melanogaster, chromosome 3R, region 87A-87A, BAC clone
             BACR03N24, complete sequence
          Length = 144152

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 22    ccccgcgccaccaccacc 39
             ||||||||||||||||||
Sbjct: 41556 ccccgcgccaccaccacc 41539
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 19      ctcccccgcgccaccacc 36
               ||||||||||||||||||
Sbjct: 2512193 ctcccccgcgccaccacc 2512210
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>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592B08
          Length = 131096

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 18    tctcccccgcgccaccaccacc 39
             |||||| |||||||||||||||
Sbjct: 25722 tctcccgcgcgccaccaccacc 25743
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>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0468A12
          Length = 143018

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 18     tctcccccgcgccaccaccacc 39
              |||||| |||||||||||||||
Sbjct: 131489 tctcccgcgcgccaccaccacc 131510
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>gb|AE003693.3| Drosophila melanogaster chromosome 3R, section 31 of 118 of the complete
              sequence
          Length = 226782

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 22     ccccgcgccaccaccacc 39
              ||||||||||||||||||
Sbjct: 113916 ccccgcgccaccaccacc 113899
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>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
              complete sequence
          Length = 173770

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 21     cccccgcgccaccaccac 38
              ||||||||||||||||||
Sbjct: 148523 cccccgcgccaccaccac 148540


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 473,598
Number of Sequences: 3902068
Number of extensions: 473598
Number of successful extensions: 81277
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80801
Number of HSP's gapped (non-prelim): 476
length of query: 39
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 19
effective length of database: 17,155,003,908
effective search space: 325945074252
effective search space used: 325945074252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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