ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GCP_CAEEL (Q10663) Bifunctional glyoxylate cycle protein (GEX-in... 31 0.73
2AT5G1_SHEEP (P17605) ATP synthase lipid-binding protein, mitocho... 28 6.2
3SKN1_CANAL (P87024) Beta-glucan synthesis-associated protein SKN1 28 6.2

>GCP_CAEEL (Q10663) Bifunctional glyoxylate cycle protein (GEX-interacting|
           protein 7) [Includes: Isocitrate lyase (EC 4.1.3.1)
           (Isocitrase) (Isocitratase) (ICL); Malate synthase (EC
           2.3.3.9)]
          Length = 968

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = -3

Query: 117 ALVRARVKRKEREAGNGHDGRWWNGIQWAPLSRR 16
           ALVRA    KEREA +GHDG W       PL++R
Sbjct: 783 ALVRAD---KEREATDGHDGTWVAHPGLVPLAKR 813



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>AT5G1_SHEEP (P17605) ATP synthase lipid-binding protein, mitochondrial|
           precursor (EC 3.6.3.14) (ATP synthase proteolipid P1)
           (ATPase protein 9) (ATPase subunit C)
          Length = 136

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 163 SKPEIPSSQKIYSSLPLYICPAHFLLS 243
           S+PEIPS Q  YSS PL +    F  S
Sbjct: 31  SRPEIPSVQPSYSSGPLQVARREFQTS 57



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>SKN1_CANAL (P87024) Beta-glucan synthesis-associated protein SKN1|
          Length = 737

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +1

Query: 82  SLFPLDSRPHQSLKNTAQNATS*WLRNSKPEIPSSQ----KIYSSLPLYICP 225
           SL+  ++R HQ L +   N ++  + N++  IPS Q     +YS+ P+   P
Sbjct: 75  SLYQSETRFHQPLLHNDSNNSNSSIGNNRQRIPSQQHDTSSLYSASPISTSP 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,210,347
Number of Sequences: 219361
Number of extensions: 531570
Number of successful extensions: 1107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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