>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)|
          Length = 1411

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +2

Query: 11  ASASPPRHLPRSRASPTTPANTA*QQQKVGLQRAGKRKFHSRFSLRSDLVQSSERARAPR 190
           A+++P +  PR  A+P  P  T      V   +AGKR+  S    +S   +S     AP 
Sbjct: 296 AASAPAKESPRKGAAPAPPGKTG---PAVAKAQAGKREEDS----QSSSEESDSEEEAPA 348

Query: 191 VSGCAGSVPRGRPSPSAA 244
            +  +G  P+ R + + A
Sbjct: 349 QAKPSGKAPQVRAASAPA 366

>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +1

Query: 82  AAAKSGPPAS---GQAQIPFQVFASIRLGPIERASTRAPR*RLCWIGSERTAVAVGGGST 252
           AAA S PP+S   G  + P ++ A+ R  P  +A   +P  R    G+    + V  G T
Sbjct: 377 AAAVSAPPSSRSRGGRRDP-RLPAAPRAAPAAQARACSPEPREEGRGA---GLGVAAGET 432

Query: 253 RGVSARSSAGCWDPRARRSS*GGPPPV 333
            G  A S  G  + RAR     GPP V
Sbjct: 433 AGWGAGSEEGRGERRARLLGEAGPPRV 459

>K0586_HUMAN (Q9BVV6) Protein KIAA0586|
          Length = 1533

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 320  PPHELLRARGSQHPALLLAETPRVDP---PPTATAVLS 216
            P  E+   +G   PA++L  TP V P   PP A AV +
Sbjct: 1078 PVKEICAEKGDDMPAIMLVNTPTVTPTTTPPPAAAVFT 1115

>ECR_HELVI (O18473) Ecdysone receptor (Ecdysteroid receptor)|
           (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH)
           (HvEcR)
          Length = 576

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -3

Query: 248 DPPPTATAVLSEPIQHSR*RGARVLARSIGPSLIEAKTWNGICACPLAGGPLFAAAK-LC 72
           DPPP   A + E +QH       V+ R +   L+E      +        PL A  K L 
Sbjct: 273 DPPPPEAARILECVQH------EVVPRFLNEKLMEQNRLKNV-------PPLTANQKSLI 319

Query: 71  WRVWWEKRGCEEDDEEGKRRL 9
            R+ W + G E+  EE  +R+
Sbjct: 320 ARLVWYQEGYEQPSEEDLKRV 340

>DAM1_YARLI (Q6C2T8) DASH complex subunit DAM1 (Outer kinetochore protein DAM1)|
          Length = 223

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +1

Query: 100 PPASGQAQIPFQVFASIRLGPIERA-STRAPR*RLCWIGSERTAVAVGGGSTRGVSARSS 276
           PP+S Q+Q+P ++  S R   I    S R PR R  ++      V  G GS  GV   S 
Sbjct: 152 PPSSYQSQLPSRIPQSSRASRIRPPNSLRPPRGRGLYLRGGSRGVTGGRGSYTGVGRGSG 211

Query: 277 AGCWDPRARR 306
               +   RR
Sbjct: 212 RPASEGTTRR 221

>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 350 DETRRSTGGGPPHELLRARGSQHPALLLAETPRVDPPPTA-TAVLSE 213
           +ET R  GG  PH LL A  S+     L+E   V  P T+ T V+ E
Sbjct: 148 EETPRGQGGTQPHRLLLAEDSEEEVDSLSERCVVKGPKTSLTTVIPE 194

>GIDA_METCA (Q60CS5) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 625

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 188 GARVLARSIGPSLIEAKTWNGICACPL 108
           GAR+ AR I P   +A++WN +   PL
Sbjct: 477 GARLAARRIRPDSSQAESWNALTEIPL 503

>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +2

Query: 14  SASPPRHLPRSRASPTTPANTA*QQQKVGLQRAGKRKFHSRFSLRS-DLVQSSERARAPR 190
           S S  R   RSR+  ++ + +  +      +R  K K  SR   RS D  +S   +R+P+
Sbjct: 216 SRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPK 275

Query: 191 VSGCAGSVPRGRPSPS--AADRRAES 262
               + S PRG  SPS   + RR+ S
Sbjct: 276 KVDRSPSPPRGSRSPSEKGSPRRSRS 301

>TF3B_MOUSE (Q8CFK2) Transcription factor IIIB 90 kDa subunit (TFIIIB90)|
           (hTFIIIB90) (B-related factor 1) (BRF-1)
          Length = 676

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 295 RARRSS*GGPPPVDLLVSSQPPVRASARRLGR 390
           R   S  GG PP D    SQPP RAS ++L R
Sbjct: 543 RDLNSKGGGSPPRD---DSQPPERASTKKLSR 571

>TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 542

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 122 CACPLAGGPLFAAAKLCWRVWWEKRGCEEDDEEGK 18
           C   + G   F   K+ W V  E+ G  ED+EEG+
Sbjct: 356 CEPGVLGSKGFTWGKVYWEVELEREGWSEDEEEGE 390

>TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 545

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 122 CACPLAGGPLFAAAKLCWRVWWEKRGCEEDDEEGK 18
           C   + G   F   K+ W V  E+ G  ED+EEG+
Sbjct: 359 CEPGVLGSKGFTWGKVYWEVELEREGWSEDEEEGE 393


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,349,762
Number of Sequences: 219361
Number of extensions: 1195499
Number of successful extensions: 4317
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4314
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)