ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RV167_YEAST (P39743) Reduced viability upon starvation protein 167 31 1.2
2GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis pro... 28 7.7

>RV167_YEAST (P39743) Reduced viability upon starvation protein 167|
          Length = 482

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 2/113 (1%)
 Frame = +3

Query: 48  RRKQSLATAV--PVTGXXXXXXXXXXXXXXXXLYIASTSASASPQGRGEPEHARSHASQP 221
           RRK  +ATA   PV+G                 Y  +T+ S +P G G    A S+A+QP
Sbjct: 288 RRKYGVATAEGSPVSGASSGVGYGAG-------YDPATATSPTPTGYGYGAAAPSYAAQP 340

Query: 222 AAMXXXXXXXXXXXXXXXXXXXXWWGGNAGTAEAQAPVFACDASNATLAAYGF 380
           AA                       G  AG      P +A  A +  L   GF
Sbjct: 341 AAQYGTAAAVGTAAAVGTAA-----GAAAGAVPGTYPQYAA-AQSPPLTGLGF 387



to top

>GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis protein 5-like 2|
           (EC 2.3.1.48) (Histone acetyltransferase GCN5) (mmGCN5)
          Length = 830

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 441 PASAATPGPWRAPTPSPS 388
           PASA+TP P  AP P+P+
Sbjct: 34  PASASTPAPTPAPAPAPA 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,932,312
Number of Sequences: 219361
Number of extensions: 477045
Number of successful extensions: 2450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2434
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top